NO27G01020.1, NO27G01020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01020.1
Unique NameNO27G01020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length375
Alignment locationchr27:334662..335359 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:334662..335359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01020NO27G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01020.1NO27G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01020.1.cds1NO27G01020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01020.1.cds2NO27G01020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01020.1.cds3NO27G01020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01020.1.cds4NO27G01020.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01020.1 ID=NO27G01020.1|Name=NO27G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=375bp
ATGTTGTATTCTCCTTTATCCAGGTCTTTTTACCTCGACGCGAGCTTGAA
GCCAGCTCGGGCAGTCATGCTTATTTTTGCGTGTTGTGTGTGTCGGTGGG
CTGCTGGCATGTCGGTGCAACAGGCATTTAGTTGGGTCATAACCGATACT
CTGCCCCTTGCATGGCAGCGCGTGATAGCCGGATCTGAGAAGAGCCGACA
AGCCACCAGCAGTCTCCCTCATCCTCTCTCTCAAGCTGCTGACGAGTCAT
GCGCCCCCACGATGACACCAATTGACGATAAGCAAGAAGCCGCCCACCAG
TCAGCTTCTAGCTCCCCCTTTGTACCTTGTCATCTGGGCGCGGGCCAGAA
GACGACGACGACAAACAAGAAGTAA
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protein sequence of NO27G01020.1

>NO27G01020.1-protein ID=NO27G01020.1-protein|Name=NO27G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MLYSPLSRSFYLDASLKPARAVMLIFACCVCRWAAGMSVQQAFSWVITDT
LPLAWQRVIAGSEKSRQATSSLPHPLSQAADESCAPTMTPIDDKQEAAHQ
SASSSPFVPCHLGAGQKTTTTNKK*
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mRNA from alignment at chr27:334662..335359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01020.1 ID=NO27G01020.1|Name=NO27G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=698bp|location=Sequence derived from alignment at chr27:334662..335359+ (Nannochloropsis oceanica)
ATGTTGTATTCTCCTTTATCCAGGTCTTTTTACCTCGACGCGAGCTTGAA
GCCAGCTCGGGCAGTCATGCTTATTTTTGCGTGTTGTGTGTGTCGGTGGG
CTGCTGGCATGTCGGTGCAACAGGCATTTAGTTGGGTCATAACCGATACT
CTGCCCCTTGCATGGCAGCGCGTGAGTGAGTGAGATAATTGTTGTGTGAA
TGAGTGTGTGAGTGAGTGAGAATGACAGAAATAGACAATACAGAAGTCAA
ATTTCGAAAACAGATAGAGAAAAAAAAATCCCCTTCCTTCCTCCCTCCCT
CTCTCCCCTTCTTTCCTACCCGCAGTAGCCGGATCTGAGAAGAGCCGACA
AGCCACCAGCAGTCTCCCTCATCCTCTCTCTCAAGCTGCTGACGAGGTCC
GTTATCTTGTGTGTGATGGCGCGGTCCTGCTTCCTTTTCCTCCTCCCCTT
CCCCCAACACCCCTACAGTCATGCGCCCCCACGATGACACCAATTGACGA
TAAGCAAGAAGCCGCCCACCAGTCAGCTTCTAGCTCCCCCTTTGTACCTT
GTCATCTGGGCGCGGTACGTGTCGCCCCGAGCACCTCTGTTGGGCTGTGT
GATTGTTTTGGATTCCCCGCGCATTGGTGTTGTCCCGCCCTCCATTCCTC
CCCCCCCCGCCCTAGGGCCAGAAGACGACGACGACAAACAAGAAGTAA
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Coding sequence (CDS) from alignment at chr27:334662..335359+

>NO27G01020.1 ID=NO27G01020.1|Name=NO27G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=375bp|location=Sequence derived from alignment at chr27:334662..335359+ (Nannochloropsis oceanica)
ATGTTGTATTCTCCTTTATCCAGGTCTTTTTACCTCGACGCGAGCTTGAA
GCCAGCTCGGGCAGTCATGCTTATTTTTGCGTGTTGTGTGTGTCGGTGGG
CTGCTGGCATGTCGGTGCAACAGGCATTTAGTTGGGTCATAACCGATACT
CTGCCCCTTGCATGGCAGCGCGTGATAGCCGGATCTGAGAAGAGCCGACA
AGCCACCAGCAGTCTCCCTCATCCTCTCTCTCAAGCTGCTGACGAGTCAT
GCGCCCCCACGATGACACCAATTGACGATAAGCAAGAAGCCGCCCACCAG
TCAGCTTCTAGCTCCCCCTTTGTACCTTGTCATCTGGGCGCGGGCCAGAA
GACGACGACGACAAACAAGAAGTAA
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Synonyms
Publications