NO27G00970.1, NO27G00970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00970.1
Unique NameNO27G00970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length960
Alignment locationchr27:322379..323338 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:322379..323338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00970.1 vs.
Match: EWM20757.1 (hypothetical protein Naga_100518g2 [Nannochloropsis gaditana])

HSP 1 Score: 398.3 bits (1022), Expect = 2.300e-107
Identity = 199/327 (60.86%), Postives = 235/327 (71.87%), Query Frame = 0 
Query:    1 MNKVLRVVDWFVRTPEIPIGSAKLVSIPLSHYCEKARWCLDLSPLRDTYIEEAHAPVFHTKHVVSLTNKRSASSTPVFVLSGNSTSDPPTIIQGSAMILAHLAQTFPAELGHLYPPGEKGERVRTLEQVLDNQLGPQSRKLVYWAMWQARQEGLSTSNPLLDALVPKVEALLWNLGEGKILFKMMQAMNIDADSIVTALEDCRQVFKEASAMLAGEGEGEGKGQ---QRKYLLGGERMTAADLTLAALAYPLINPPAFASLGLSGSSASPWTMKLGDLSAEFRATPAGQHVLRLYAEERFPAV-----DGTGTLCLRTVNCNKMPWQ 320
            M+ VLR V WFVRTPE+P   AKL +I LSHYCEKARW LDLSPLRDTYIE+AHAPVFH +  V+LT  R  +  PV VL G     PPT++Q SA IL HLA  +P ELGH+YPPG+ G++VR LE+ L  QLGP +RK+VYW MWQ RQEG+ T N LL+   P  EA +W L E KIL  M++AM ID  S + ALE+ R++F+E SA+L  E  G+G G     R+YLLG  RMTAADLT AALAYPLINPPAFASLGLSG+ ASPW  +L  ++ EFRATPAGQHVLRLY EERFP       + TG LCLRT N +K PWQ
Sbjct:    1 MDHVLRTVGWFVRTPEVPKDGAKLCTIALSHYCEKARWALDLSPLRDTYIEDAHAPVFHYRPTVALTKDRKKTGLPVLVLPGVDPEGPPTVVQDSAEILQHLASLYPKELGHMYPPGDMGDKVRALERKLGEQLGPATRKIVYWEMWQGRQEGIDTCNALLERHYPTAEARMWRLLEAKILPVMLKAMKIDETSTLAALEESREIFREVSALLDSEEGGKGGGAPAGPRRYLLGANRMTAADLTFAALAYPLINPPAFASLGLSGAEASPWAKRLAVITKEFRATPAGQHVLRLYGEERFPETSMAGKEPTGQLCLRTSNRDKWPWQ 327
The following BLAST results are available for this feature:
BLAST of NO27G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20757.12.300e-10760.86hypothetical protein Naga_100518g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00970NO27G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00970.1NO27G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00970.1.cds1NO27G00970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00970.1 ID=NO27G00970.1|Name=NO27G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=960bp
ATGAATAAGGTCCTTCGCGTGGTGGACTGGTTCGTTCGGACGCCCGAGAT
ACCCATAGGTAGTGCTAAGCTTGTCTCAATCCCCTTGTCGCACTACTGTG
AAAAGGCTCGTTGGTGCCTCGACTTATCGCCGCTCCGCGACACGTACATC
GAAGAGGCGCACGCCCCTGTGTTTCACACCAAGCATGTGGTCTCCTTGAC
CAATAAACGCAGCGCTTCAAGCACCCCTGTGTTCGTCCTGTCTGGAAACA
GCACGAGCGACCCACCAACCATAATCCAGGGCTCTGCAATGATCCTCGCG
CACCTGGCCCAGACCTTCCCTGCCGAGCTTGGACACCTCTACCCTCCCGG
AGAAAAGGGAGAGCGTGTGCGCACTCTCGAACAGGTCTTGGACAACCAAT
TGGGTCCACAGTCGCGCAAGCTGGTGTATTGGGCAATGTGGCAGGCCCGG
CAAGAGGGACTGTCCACATCCAACCCCTTGTTAGACGCGCTTGTACCTAA
GGTCGAAGCCCTGCTCTGGAATCTGGGGGAGGGCAAGATCCTGTTCAAGA
TGATGCAAGCGATGAATATTGACGCCGATTCCATTGTCACTGCCCTGGAA
GACTGTCGGCAAGTCTTCAAGGAAGCCTCCGCCATGCTGGCGGGCGAGGG
CGAGGGGGAAGGCAAGGGCCAGCAGAGAAAGTACCTTCTAGGCGGAGAGC
GCATGACGGCTGCAGACCTGACATTGGCTGCCTTGGCCTATCCCCTCATT
AATCCGCCTGCATTTGCCTCACTGGGCCTCTCTGGGTCTAGCGCTTCCCC
CTGGACCATGAAGCTGGGTGATTTGAGTGCCGAGTTCCGAGCTACCCCTG
CGGGTCAGCATGTCCTCCGGCTGTATGCAGAGGAGCGATTTCCTGCTGTG
GATGGAACAGGCACGTTGTGTCTGCGGACGGTGAATTGTAACAAGATGCC
ATGGCAGTAA
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protein sequence of NO27G00970.1

>NO27G00970.1-protein ID=NO27G00970.1-protein|Name=NO27G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MNKVLRVVDWFVRTPEIPIGSAKLVSIPLSHYCEKARWCLDLSPLRDTYI
EEAHAPVFHTKHVVSLTNKRSASSTPVFVLSGNSTSDPPTIIQGSAMILA
HLAQTFPAELGHLYPPGEKGERVRTLEQVLDNQLGPQSRKLVYWAMWQAR
QEGLSTSNPLLDALVPKVEALLWNLGEGKILFKMMQAMNIDADSIVTALE
DCRQVFKEASAMLAGEGEGEGKGQQRKYLLGGERMTAADLTLAALAYPLI
NPPAFASLGLSGSSASPWTMKLGDLSAEFRATPAGQHVLRLYAEERFPAV
DGTGTLCLRTVNCNKMPWQ*
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mRNA from alignment at chr27:322379..323338-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00970.1 ID=NO27G00970.1|Name=NO27G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=960bp|location=Sequence derived from alignment at chr27:322379..323338- (Nannochloropsis oceanica)
ATGAATAAGGTCCTTCGCGTGGTGGACTGGTTCGTTCGGACGCCCGAGAT
ACCCATAGGTAGTGCTAAGCTTGTCTCAATCCCCTTGTCGCACTACTGTG
AAAAGGCTCGTTGGTGCCTCGACTTATCGCCGCTCCGCGACACGTACATC
GAAGAGGCGCACGCCCCTGTGTTTCACACCAAGCATGTGGTCTCCTTGAC
CAATAAACGCAGCGCTTCAAGCACCCCTGTGTTCGTCCTGTCTGGAAACA
GCACGAGCGACCCACCAACCATAATCCAGGGCTCTGCAATGATCCTCGCG
CACCTGGCCCAGACCTTCCCTGCCGAGCTTGGACACCTCTACCCTCCCGG
AGAAAAGGGAGAGCGTGTGCGCACTCTCGAACAGGTCTTGGACAACCAAT
TGGGTCCACAGTCGCGCAAGCTGGTGTATTGGGCAATGTGGCAGGCCCGG
CAAGAGGGACTGTCCACATCCAACCCCTTGTTAGACGCGCTTGTACCTAA
GGTCGAAGCCCTGCTCTGGAATCTGGGGGAGGGCAAGATCCTGTTCAAGA
TGATGCAAGCGATGAATATTGACGCCGATTCCATTGTCACTGCCCTGGAA
GACTGTCGGCAAGTCTTCAAGGAAGCCTCCGCCATGCTGGCGGGCGAGGG
CGAGGGGGAAGGCAAGGGCCAGCAGAGAAAGTACCTTCTAGGCGGAGAGC
GCATGACGGCTGCAGACCTGACATTGGCTGCCTTGGCCTATCCCCTCATT
AATCCGCCTGCATTTGCCTCACTGGGCCTCTCTGGGTCTAGCGCTTCCCC
CTGGACCATGAAGCTGGGTGATTTGAGTGCCGAGTTCCGAGCTACCCCTG
CGGGTCAGCATGTCCTCCGGCTGTATGCAGAGGAGCGATTTCCTGCTGTG
GATGGAACAGGCACGTTGTGTCTGCGGACGGTGAATTGTAACAAGATGCC
ATGGCAGTAA
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Coding sequence (CDS) from alignment at chr27:322379..323338-

>NO27G00970.1 ID=NO27G00970.1|Name=NO27G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at chr27:322379..323338- (Nannochloropsis oceanica)
ATGAATAAGGTCCTTCGCGTGGTGGACTGGTTCGTTCGGACGCCCGAGAT
ACCCATAGGTAGTGCTAAGCTTGTCTCAATCCCCTTGTCGCACTACTGTG
AAAAGGCTCGTTGGTGCCTCGACTTATCGCCGCTCCGCGACACGTACATC
GAAGAGGCGCACGCCCCTGTGTTTCACACCAAGCATGTGGTCTCCTTGAC
CAATAAACGCAGCGCTTCAAGCACCCCTGTGTTCGTCCTGTCTGGAAACA
GCACGAGCGACCCACCAACCATAATCCAGGGCTCTGCAATGATCCTCGCG
CACCTGGCCCAGACCTTCCCTGCCGAGCTTGGACACCTCTACCCTCCCGG
AGAAAAGGGAGAGCGTGTGCGCACTCTCGAACAGGTCTTGGACAACCAAT
TGGGTCCACAGTCGCGCAAGCTGGTGTATTGGGCAATGTGGCAGGCCCGG
CAAGAGGGACTGTCCACATCCAACCCCTTGTTAGACGCGCTTGTACCTAA
GGTCGAAGCCCTGCTCTGGAATCTGGGGGAGGGCAAGATCCTGTTCAAGA
TGATGCAAGCGATGAATATTGACGCCGATTCCATTGTCACTGCCCTGGAA
GACTGTCGGCAAGTCTTCAAGGAAGCCTCCGCCATGCTGGCGGGCGAGGG
CGAGGGGGAAGGCAAGGGCCAGCAGAGAAAGTACCTTCTAGGCGGAGAGC
GCATGACGGCTGCAGACCTGACATTGGCTGCCTTGGCCTATCCCCTCATT
AATCCGCCTGCATTTGCCTCACTGGGCCTCTCTGGGTCTAGCGCTTCCCC
CTGGACCATGAAGCTGGGTGATTTGAGTGCCGAGTTCCGAGCTACCCCTG
CGGGTCAGCATGTCCTCCGGCTGTATGCAGAGGAGCGATTTCCTGCTGTG
GATGGAACAGGCACGTTGTGTCTGCGGACGGTGAATTGTAACAAGATGCC
ATGGCAGTAA
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Synonyms
Publications