NO27G00950.1, NO27G00950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00950.1
Unique NameNO27G00950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1969
Alignment locationchr27:319976..322263 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:319976..322263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00950.1 vs.
Match: Q40302.3 (RecName: Full=Calmodulin; Short=CaM; CAA59418.1 calmodulin [Macrocystis pyrifera]; AND61384.1 calmodulin 1 [Pyropia haitanensis])

HSP 1 Score: 287.3 bits (734), Expect = 3.900e-74
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0 
Query:   73 ATELTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDQEVDEMIREADIDGDGQINYEEFVKMMMAK 221
            A +LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI+EAFKVFDKDGNGFISAAELRHIMTNLGEKLTD+EVDEMIREADIDGDGQINYEEFVKMMMAK
Sbjct:    2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIIEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMAK 149
The following BLAST results are available for this feature:
BLAST of NO27G00950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
Q40302.33.900e-7497.30RecName: Full=Calmodulin; Short=CaM; CAA59418.1 ca... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00950NO27G00950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00950.1NO27G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00950.1.cds1NO27G00950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00950.1.cds2NO27G00950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00950.1.cds3NO27G00950.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00950.1 ID=NO27G00950.1|Name=NO27G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1969bp
GAAGAAGGGAGCGCCTGTCCTTTATTTTTAAAAAACCATGGCACAAATAC
GTCTGATCCACCAGACGCACGTCCCACCTCTAGACAGGATGGAGCCGTCC
TACACTTTTTGATTGTTACGCGCAAAAGCTTGCGCGTGCTATGGTTGGAG
TTGCTTTGGCGGAGCATTTTTGGTTTTGGCGAGGGACAAGTGCCCTTGTC
CTGCGTGTCGATGATTCCTCGATACGGTCAAACTAAAAGAAACCTCTCGC
AAATCACCCACATTATCCACCATCTCCGCCACCACACATACTCACATAGG
TAGAGAAGTTATCGAGTCGCTGGAAGATGCGGATGGCAGCTGTGCGGTGG
CTACAGCAAGTCAAAAGCAAAAGAAGCGCCGCCTGGTTGTTCGCCTACGT
TCATCATTAGAGTTCTCTATGCACCTGGAGGGAGGAATGAACGACTAGCA
TGATGGACGAAGATAACACGAACATGAGCGACGGAAGATCTGCGTGAGCC
AAGCATGCTCTGCTGCATGGCTTATAACTGGCCTTAGGGTGCGCAACTCG
AAAGCGAAGCCGGCGGGAGTTCTTCATTACTGGCGCTGGGTGGGAACAAT
ACCTCGCATGGCACCCGAGCTACTCCAAACTATCATACCTGGTGGTTGTC
CACGTCTTTTTACGGTGTTGGACTTTTTACTAAGACGCACCACTCGTGGA
GTTGTCGTGCCCATGGGAGCTTGCGTGGGCCCCTGGCGCCCTTAGGTGTG
GCCCGGCCTCCCTCCTTCGCTCTCTCCCTCCCCGCCCAGGGTATTTGGGG
CCTCATGAGCAAACTTTGGACATCATGGGACGCGTCTCAACGCGCCTTGT
TGCCATTCTTATCCTTTTTTTGGGTTTCCCGCGTTGTCGTCTACGATGTG
CAACAGATAAAGAGAGATGTCGCCTCAAACGATTTGCTCACCTCTCCCCA
TGTACATCCACACGCACACGCACGCACAGGCAACCACACCACTTTCCGAC
TCACACCATGAGCAAAGACACCAAAGGCGACAAGGGGGGGGCAACCGAGC
TAACAGAGGAGCAGATCGCCGAGTTCAAGGAGGCCTTCTCCCTGTTTGAT
AAGGACGGTGACGGGACCATTACCACCAAGGAACTGGGCACGGTCATGCG
TTCGTTGGGACAGAACCCGACGGAGGCCGAGTTACAAGATATGATCAATG
AGGTGGATGCTGATGGAAATGGCACCATCGATTTCCCGGAATTTCTGACG
ATGATGGCCAGGAAGATGAAGGATACGGACTCGGAGGAGGAGATTCTGGA
GGCGTTTAAGGTCTTCGACAAGGACGGGAATGGCTTCATCTCCGCGGCTG
AGCTCCGACACATCATGACCAACCTGGGGGAGAAGCTGACAGACCAGGAA
GTTGACGAAATGATCCGTGAGGCGGACATTGACGGAGACGGTCAAATCAA
CTACGAGGAGTTCGTGAAGATGATGATGGCCAAATAGGGAGGAGAGGGAA
CGAGAGAGGAAGGCAAGGCAACTTAAAACACGGACGGAGAGCGTAAAATT
AAGGAGCGTACGGGTAAATGGGGAAGAGGGAAGAGGGAGATGTAGAAGGG
CTAAAGAGAAAGAAGTGTGCTCACGGCCCCTCTCGTTGCAGGCAGCGTTA
TGGGCGAGAATGGAGGGGTGGAAGGGAAGGGGGGAAGGGCGGTGGACCCC
TTCATTTATTTTCCGGCGATATATACACTTATTTTTATCATGTTGTTATC
CCATGTGAATGGGGAAAGAGCGGCCATGTAGCAAAGGATGGACCCCTTGT
CGTCTGTTCTTACCCTTCTCTATTCCGTTTTCGCATGAGTCAGACACACT
TATCGATCGAGTCGCTGGGAACAATTTGAATGGGGGAAGGAGTCATCCGT
TTTGTGAGAAAGAAAAGAAGAAATAAGGAAGAGAAAGAAACACGTTGATC
GTAAAATGAAATGATTTCG
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protein sequence of NO27G00950.1

>NO27G00950.1-protein ID=NO27G00950.1-protein|Name=NO27G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MGRVSTRLVAILILFLGFPRCRLRCATDKERCRLKRFAHLSPCTSTRTRT
HRQPHHFPTHTMSKDTKGDKGGATELTEEQIAEFKEAFSLFDKDGDGTIT
TKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKD
TDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDQEVDEMIREA
DIDGDGQINYEEFVKMMMAK*
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mRNA from alignment at chr27:319976..322263+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00950.1 ID=NO27G00950.1|Name=NO27G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2288bp|location=Sequence derived from alignment at chr27:319976..322263+ (Nannochloropsis oceanica)
GAAGAAGGGAGCGCCTGTCCTTTATTTTTAAAAAACCATGGCACAAATAC
GTCTGATCCACCAGACGCACGTCCCACCTCTAGACAGGATGGAGCCGTCC
TACACTTTTTGATTGTTACGCGCAAAAGCTTGCGCGTGCTATGGTTGGAG
TTGCTTTGGCGGAGCATTTTTGGTTTTGGCGAGGGACAAGTGCCCTTGTC
CTGCGTGTCGATGATTCCTCGATACGGTCAAACTAAAAGAAACCTCTCGC
AAATCACCCACATTATCCACCATCTCCGCCACCACACATACTCACATAGG
TAGAGAAGTTATCGAGTCGCTGGAAGATGCGGATGGCAGCTGTGCGGTGG
CTACAGCAAGTCAAAAGCAAAAGAAGCGCCGCCTGGTTGTTCGCCTACGT
TCATCATTAGAGTTCTCTATGCACCTGGAGGGAGGAATGAACGACTAGCA
TGATGGACGAAGATAACACGAACATGAGCGACGGAAGATCTGCGTGAGCC
AAGCATGCTCTGCTGCATGGCTTATAACTGGCCTTAGGGTGCGCAACTCG
AAAGCGAAGCCGGCGGGAGTTCTTCATTACTGGCGCTGGGTGGGAACAAT
ACCTCGCATGGCACCCGAGCTACTCCAAACTATCATACCTGGTGGTTGTC
CACGTCTTTTTACGGTGTTGGACTTTTTACTAAGACGCACCACTCGTGGA
GTTGTCGTGCCCATGGGAGCTTGCGTGGGCCCCTGGCGCCCTTAGGTGTG
GCCCGGCCTCCCTCCTTCGCTCTCTCCCTCCCCGCCCAGGGTATTTGGGG
CCTCATGAGCAAACTTTGGACATCATGGGACGCGTCTCAACGCGCCTTGT
TGCCATTCTTATCCTTTTTTTGGGTTTCCCGCGTTGTCGTCTACGATGTG
CAACAGATAAAGAGAGATGTCGCCTCAAACGATTTGCTCACCTCTCCCCA
TGTACATCCACACGCACACGCACGCACAGGCAACCACACCACTTTCCGAC
TCACACCATGAGCAAAGACACCAAAGGCGACAAGGGGGGGGCAACCGAGC
TAACAGAGGAGCAGATCGCCGGTACGTTCCTCCCTCCCTCCCTCTCTTCC
TCATACCCCCTCTTCCTTCCCCCCTCTCGCTTCTTCCCCTCAATTTAACC
CGTCGTATGCCTTCCTTTCGCATCAGAGTTCAAGGAGGCCTTCTCCCTGT
TTGATAAGGACGGTGACGGGACCATTACCACCAAGGAACTGGGCACGGTC
ATGCGTTCGTTGGGACAGAACCCGACGGAGGCCGAGTTACAAGATATGAT
CAATGAGGTGGATGCTGATGGAAATGGCACCATCGATTTCCCGGAATTTC
TGACGATGATGGCCAGGAAGATGAAGGATACGGACTCGGAGGAGGAGATT
CTGGAGGCGTTTAAGGTAGGCAGGCAGGCAGGGAGTGAGAGAGGGATGGA
GAGGAGGCCTTAGTCCGTTGTCCTACTTTTTTGTCCAATCAACTTCCTCC
AGCGTGAGAGTACGGATTTAGACAGGCGGCCGTGTATACCCCTTGCATTT
AGATCTTAACACTACTTGCTGCCGACGGTGATGTCATTGAACCCACCTCC
CCTCTCCTTCCTTTTCTCCGTTTTCCCAGGTCTTCGACAAGGACGGGAAT
GGCTTCATCTCCGCGGCTGAGCTCCGACACATCATGACCAACCTGGGGGA
GAAGCTGACAGACCAGGAAGTTGACGAAATGATCCGTGAGGCGGACATTG
ACGGAGACGGTCAAATCAACTACGAGGAGTTCGTGAAGATGATGATGGCC
AAATAGGGAGGAGAGGGAACGAGAGAGGAAGGCAAGGCAACTTAAAACAC
GGACGGAGAGCGTAAAATTAAGGAGCGTACGGGTAAATGGGGAAGAGGGA
AGAGGGAGATGTAGAAGGGCTAAAGAGAAAGAAGTGTGCTCACGGCCCCT
CTCGTTGCAGGCAGCGTTATGGGCGAGAATGGAGGGGTGGAAGGGAAGGG
GGGAAGGGCGGTGGACCCCTTCATTTATTTTCCGGCGATATATACACTTA
TTTTTATCATGTTGTTATCCCATGTGAATGGGGAAAGAGCGGCCATGTAG
CAAAGGATGGACCCCTTGTCGTCTGTTCTTACCCTTCTCTATTCCGTTTT
CGCATGAGTCAGACACACTTATCGATCGAGTCGCTGGGAACAATTTGAAT
GGGGGAAGGAGTCATCCGTTTTGTGAGAAAGAAAAGAAGAAATAAGGAAG
AGAAAGAAACACGTTGATCGTAAAATGAAATGATTTCG
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Coding sequence (CDS) from alignment at chr27:319976..322263+

>NO27G00950.1 ID=NO27G00950.1|Name=NO27G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr27:319976..322263+ (Nannochloropsis oceanica)
ATGGGACGCGTCTCAACGCGCCTTGTTGCCATTCTTATCCTTTTTTTGGG
TTTCCCGCGTTGTCGTCTACGATGTGCAACAGATAAAGAGAGATGTCGCC
TCAAACGATTTGCTCACCTCTCCCCATGTACATCCACACGCACACGCACG
CACAGGCAACCACACCACTTTCCGACTCACACCATGAGCAAAGACACCAA
AGGCGACAAGGGGGGGGCAACCGAGCTAACAGAGGAGCAGATCGCCGAGT
TCAAGGAGGCCTTCTCCCTGTTTGATAAGGACGGTGACGGGACCATTACC
ACCAAGGAACTGGGCACGGTCATGCGTTCGTTGGGACAGAACCCGACGGA
GGCCGAGTTACAAGATATGATCAATGAGGTGGATGCTGATGGAAATGGCA
CCATCGATTTCCCGGAATTTCTGACGATGATGGCCAGGAAGATGAAGGAT
ACGGACTCGGAGGAGGAGATTCTGGAGGCGTTTAAGGTCTTCGACAAGGA
CGGGAATGGCTTCATCTCCGCGGCTGAGCTCCGACACATCATGACCAACC
TGGGGGAGAAGCTGACAGACCAGGAAGTTGACGAAATGATCCGTGAGGCG
GACATTGACGGAGACGGTCAAATCAACTACGAGGAGTTCGTGAAGATGAT
GATGGCCAAATAG
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Synonyms
Publications