NO27G00790.1, NO27G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00790.1
Unique NameNO27G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1372
Alignment locationchr27:278145..279692 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:278145..279692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00790.1 vs.
Match: XP_005853806.1 (hypothetical protein NGA_0440500 [Nannochloropsis gaditana CCMP526]; EKU22554.1 hypothetical protein NGA_0440500 [Nannochloropsis gaditana CCMP526]; EWM21009.1 conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 516.2 bits (1328), Expect = 7.700e-143
Identity = 257/337 (76.26%), Postives = 288/337 (85.46%), Query Frame = 0 
Query:    1 MAGRE---FLAADAPRWRPELAVRQNPYRYLEHQKGTIGVLKIRLIDGRDLDRALLDNSTASGGGGGGRGASISPQVVIRVADEEAKSTVAPRNAHPSWRERFTMSLKKGVLQEGAPVLVIFQVIDASSWRS-----KGKDLGTGSLDILPLLNGSRGSHVMDEWIDLSPGGGALHVVVEYEPIGMEPEVDDVVCFEAFARSPRSLVFPPNEPMVVRAVSGAYLLLGFRTPGTRQAHSPEGAPECRVKVHRQTVFVIERHTFMDAAWHSLMDVGELFQTIPPVHWAKKQLQPYAKYVQVLAQPALTSLSLAYAAARLAMRSGMAAVGGATSTVFGDD 330
            MA RE   F AADAP WRPE+AVRQNPYRYL+HQKGTIG+L IRLIDGRDLD        ++G G  GR AS+SPQVVIRV  EEA+S+V PRNAHPSW+ERFTM+LKKGVLQEGAPVLV+FQ +DA+SWRS     KG+DLG+GSLDILPLLNGSRGSHVMDEW+ LSPG G LHVVVEYEP+GM PE+DDVV FEAFARSPRSLV P NEPMVVRAVSGAYLL+GFRTP  RQA  PE APECR++VHRQTVFVIERHT +DAAWHS++D  ++ Q +PPV WAKKQLQPYAKY QVLA+PALTSL + +AAARLAMRSGMAA+GGATSTVFGDD
Sbjct:    1 MAARETSPFQAADAPIWRPEMAVRQNPYRYLDHQKGTIGILDIRLIDGRDLD--------STGRGESGRSASVSPQVVIRVPAEEARSSVVPRNAHPSWQERFTMNLKKGVLQEGAPVLVVFQALDAASWRSPLGGSKGRDLGSGSLDILPLLNGSRGSHVMDEWVSLSPGPGRLHVVVEYEPVGMVPEMDDVVFFEAFARSPRSLVLPTNEPMVVRAVSGAYLLVGFRTPTARQARGPEAAPECRLRVHRQTVFVIERHTLLDAAWHSVIDAADMVQAVPPVRWAKKQLQPYAKYAQVLARPALTSLHVTFAAARLAMRSGMAALGGATSTVFGDD 329
The following BLAST results are available for this feature:
BLAST of NO27G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853806.17.700e-14376.26hypothetical protein NGA_0440500 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00790NO27G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00790.1NO27G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00790.1.cds1NO27G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00790.1.cds2NO27G00790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00790.1 ID=NO27G00790.1|Name=NO27G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1372bp
CAGGTTAAAAGTCTGACGACGCACCTCTTGCTTCCGCCGCTCTGCAAGAA
GCAGCAGCAACAAGTGCCTAGGAGCAACGCACCCCAGCACACCAGCAAGC
GTCCCTGCTTCTTTCCTACACACAGCAACGATGGCCGGCCGGGAGTTCCT
TGCCGCAGACGCCCCCCGGTGGCGGCCTGAGTTGGCGGTGCGCCAGAACC
CCTATCGTTATCTTGAACACCAAAAAGGCACCATTGGCGTCCTCAAAATC
CGCCTTATCGATGGCCGGGATCTCGATCGCGCCCTACTAGACAACAGCAC
AGCGAGTGGCGGCGGAGGAGGAGGACGAGGTGCCAGTATCTCACCGCAAG
TCGTTATACGAGTGGCGGACGAAGAAGCCAAGTCGACAGTAGCCCCACGG
AACGCTCACCCGTCGTGGCGGGAGAGGTTCACTATGAGTCTAAAGAAAGG
CGTGTTGCAAGAAGGAGCGCCGGTCTTGGTTATATTTCAAGTGATTGACG
CGAGCTCGTGGCGGAGCAAGGGCAAGGATTTGGGGACGGGTAGTCTGGAT
ATTTTGCCGTTATTGAATGGGTCGAGGGGGAGTCATGTGATGGACGAGTG
GATTGATCTGAGTCCAGGCGGGGGGGCATTGCATGTTGTGGTCGAATACG
AACCAATTGGGATGGAGCCGGAGGTGGATGATGTGGTATGTTTTGAGGCA
TTTGCACGGAGTCCGCGGTCGTTGGTCTTTCCCCCGAATGAGCCAATGGT
GGTGCGGGCCGTCTCAGGGGCTTATTTGTTGCTGGGTTTTCGGACGCCTG
GCACCCGCCAAGCCCACTCCCCTGAGGGAGCGCCGGAGTGTCGAGTCAAG
GTACACCGACAAACAGTCTTCGTCATCGAGCGGCACACGTTCATGGACGC
GGCCTGGCATTCCCTTATGGACGTTGGCGAGCTTTTTCAAACCATCCCTC
CCGTGCACTGGGCAAAGAAACAGCTCCAGCCGTACGCCAAGTACGTGCAG
GTACTCGCCCAGCCGGCCTTGACCTCGTTATCGCTAGCCTACGCTGCGGC
GAGACTGGCGATGAGAAGCGGTATGGCGGCAGTTGGTGGTGCGACCAGTA
CGGTATTTGGGGACGATTAAAGGGGAAGGTTTTTGTCGTTGAGTGAGCTG
GGCCCTTGTCTTGTTTGGGAAGCGAGGGAGGGAGCGCGGGGATATTGTAC
AGAAATTAGCAGCGGGAGATGACTCATTGGGGGGGAGTATATCTCGCTCA
CAGGAAACGTTATCGGGGATCCGAATAGGGAAAGAACGAAGAACAACAAG
AAGATGAAAAGAAGGACAGCAATGAGACTTACAGGTCTCAGTAATCAAAA
CTAACAAATACCAAACTAGGGT
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protein sequence of NO27G00790.1

>NO27G00790.1-protein ID=NO27G00790.1-protein|Name=NO27G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MAGREFLAADAPRWRPELAVRQNPYRYLEHQKGTIGVLKIRLIDGRDLDR
ALLDNSTASGGGGGGRGASISPQVVIRVADEEAKSTVAPRNAHPSWRERF
TMSLKKGVLQEGAPVLVIFQVIDASSWRSKGKDLGTGSLDILPLLNGSRG
SHVMDEWIDLSPGGGALHVVVEYEPIGMEPEVDDVVCFEAFARSPRSLVF
PPNEPMVVRAVSGAYLLLGFRTPGTRQAHSPEGAPECRVKVHRQTVFVIE
RHTFMDAAWHSLMDVGELFQTIPPVHWAKKQLQPYAKYVQVLAQPALTSL
SLAYAAARLAMRSGMAAVGGATSTVFGDD*
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mRNA from alignment at chr27:278145..279692-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00790.1 ID=NO27G00790.1|Name=NO27G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp|location=Sequence derived from alignment at chr27:278145..279692- (Nannochloropsis oceanica)
CAGGTTAAAAGTCTGACGACGCACCTCTTGCTTCCGCCGCTCTGCAAGAA
GCAGCAGCAACAAGTGCCTAGGAGCAACGCACCCCAGCACACCAGCAAGC
GTCCCTGCTTCTTTCCTACACACAGCAACGATGGCCGGCCGGGAGTTCCT
TGCCGCAGACGCCCCCCGGTGGCGGCCTGAGTTGGCGGTGCGCCAGAACC
CCTATCGTTATCTTGAACACCAAAAAGGCACCATTGGCGTCCTCAAAATC
CGCCTTATCGATGGCCGGGATCTCGATCGCGCCCTACTAGACAACAGCAC
AGCGAGTGGCGGCGGAGGAGGAGGACGAGGTGCCAGTATCTCACCGCAAG
TCGTTATACGAGTGGCGGACGAAGAAGCCAAGTCGACAGTAGCCCCACGG
AACGCTCACCCGTCGTGGCGGGAGAGGTTCACTATGAGTCTAAAGAAAGG
CGTGTTGCAAGAAGGAGCGCCGGTCTTGGTTATATTTCAAGTGATTGACG
CGAGCTCGTGGCGGAGCAAGGGCAAGGATTTGGGGACGGGTAGTCTGGAT
ATTTTGCCGTTATTGAATGGGTCGAGGGGGAGTCATGTGATGGACGAGTG
GATTGATCTGAGTCCAGGCGGGGGGGCATTGCATGTTGTGGTCGAATACG
AACCAATTGGGATGGAGCCGGAGGTGGATGATGTGGTATGTTTTGAGGCA
TTTGCACGGAGTCCGCGGTCGTTGGTCTTTCCCCCGAATGAGCCAATGGT
GGTGCGGGTACGTCTAGGCGTGGAAAGGAGGAAGGGAGGGAGGGAGAGAG
AGAGAGATGTGTTCGTGCATATCCATTGATTGATCCTTTTTAATTTTATT
ATCTATCCCTCTGCGTATATTCATTGATTAATACTTTATTATTCAATGTT
TCATCCTTCTACTTTCCTCTCCGCTTTTCTCAGGCCGTCTCAGGGGCTTA
TTTGTTGCTGGGTTTTCGGACGCCTGGCACCCGCCAAGCCCACTCCCCTG
AGGGAGCGCCGGAGTGTCGAGTCAAGGTACACCGACAAACAGTCTTCGTC
ATCGAGCGGCACACGTTCATGGACGCGGCCTGGCATTCCCTTATGGACGT
TGGCGAGCTTTTTCAAACCATCCCTCCCGTGCACTGGGCAAAGAAACAGC
TCCAGCCGTACGCCAAGTACGTGCAGGTACTCGCCCAGCCGGCCTTGACC
TCGTTATCGCTAGCCTACGCTGCGGCGAGACTGGCGATGAGAAGCGGTAT
GGCGGCAGTTGGTGGTGCGACCAGTACGGTATTTGGGGACGATTAAAGGG
GAAGGTTTTTGTCGTTGAGTGAGCTGGGCCCTTGTCTTGTTTGGGAAGCG
AGGGAGGGAGCGCGGGGATATTGTACAGAAATTAGCAGCGGGAGATGACT
CATTGGGGGGGAGTATATCTCGCTCACAGGAAACGTTATCGGGGATCCGA
ATAGGGAAAGAACGAAGAACAACAAGAAGATGAAAAGAAGGACAGCAATG
AGACTTACAGGTCTCAGTAATCAAAACTAACAAATACCAAACTAGGGT
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Coding sequence (CDS) from alignment at chr27:278145..279692-

>NO27G00790.1 ID=NO27G00790.1|Name=NO27G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at chr27:278145..279692- (Nannochloropsis oceanica)
ATGGCCGGCCGGGAGTTCCTTGCCGCAGACGCCCCCCGGTGGCGGCCTGA
GTTGGCGGTGCGCCAGAACCCCTATCGTTATCTTGAACACCAAAAAGGCA
CCATTGGCGTCCTCAAAATCCGCCTTATCGATGGCCGGGATCTCGATCGC
GCCCTACTAGACAACAGCACAGCGAGTGGCGGCGGAGGAGGAGGACGAGG
TGCCAGTATCTCACCGCAAGTCGTTATACGAGTGGCGGACGAAGAAGCCA
AGTCGACAGTAGCCCCACGGAACGCTCACCCGTCGTGGCGGGAGAGGTTC
ACTATGAGTCTAAAGAAAGGCGTGTTGCAAGAAGGAGCGCCGGTCTTGGT
TATATTTCAAGTGATTGACGCGAGCTCGTGGCGGAGCAAGGGCAAGGATT
TGGGGACGGGTAGTCTGGATATTTTGCCGTTATTGAATGGGTCGAGGGGG
AGTCATGTGATGGACGAGTGGATTGATCTGAGTCCAGGCGGGGGGGCATT
GCATGTTGTGGTCGAATACGAACCAATTGGGATGGAGCCGGAGGTGGATG
ATGTGGTATGTTTTGAGGCATTTGCACGGAGTCCGCGGTCGTTGGTCTTT
CCCCCGAATGAGCCAATGGTGGTGCGGGCCGTCTCAGGGGCTTATTTGTT
GCTGGGTTTTCGGACGCCTGGCACCCGCCAAGCCCACTCCCCTGAGGGAG
CGCCGGAGTGTCGAGTCAAGGTACACCGACAAACAGTCTTCGTCATCGAG
CGGCACACGTTCATGGACGCGGCCTGGCATTCCCTTATGGACGTTGGCGA
GCTTTTTCAAACCATCCCTCCCGTGCACTGGGCAAAGAAACAGCTCCAGC
CGTACGCCAAGTACGTGCAGGTACTCGCCCAGCCGGCCTTGACCTCGTTA
TCGCTAGCCTACGCTGCGGCGAGACTGGCGATGAGAAGCGGTATGGCGGC
AGTTGGTGGTGCGACCAGTACGGTATTTGGGGACGATTAA
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Synonyms
Publications