NO27G00770.1, NO27G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00770.1
Unique NameNO27G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2035
Alignment locationchr27:273258..276119 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:273258..276119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00770.1 vs.
Match: EJK75376.1 (hypothetical protein THAOC_02900 [Thalassiosira oceanica])

HSP 1 Score: 212.2 bits (539), Expect = 1.700e-51
Identity = 116/214 (54.21%), Postives = 153/214 (71.50%), Query Frame = 0 
Query:    1 MADAEKDPETTATEAKEGGEDAGREGEGAAEAENYESTAIFTPVVQLDEVETKTHEEDEETLYKMRSKLYVFGEAMLDKGSGKKTWLERGIGEVKLLKHKENQRIRLLMRQEKTMKVIANHMVDPRIVMQPNVGSDRSWVWTAYDYAEGDLQEEVFALKFGKPQDAEEFKTAFDEAKKAMKAFVAVDEEPEKEGDAGAAEEAAEAFSSLKVGKE 215
            M++ E   E    E +E    A  E E  AEA   ESTA F PVV+LDEVE K+ EE+EETL   RSKL+++GE +LDKG+GKKTW ERGIGE ++L+H+E+QR+R LMRQEKTMKVIANH +DPRI ++PN GSDRSWVW+ YD+AEG+L+E+V AL+F     A EFK  ++E +K M+A +A +++P+   + G A+EAAEA   L    E
Sbjct:    1 MSEEETKKEDPKAE-EEPAAAAAAEPEKPAEAPEEESTATFEPVVKLDEVEVKSGEEEEETLCTYRSKLFIYGETLLDKGTGKKTWKERGIGEARILRHREHQRLRFLMRQEKTMKVIANHALDPRIKLEPNAGSDRSWVWSCYDFAEGELEEKVLALRFANSDLANEFKEKYEECQKEMEALLAGEDKPD---EGGEADEAAEALDKLTTSGE 210
The following BLAST results are available for this feature:
BLAST of NO27G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EJK75376.11.700e-5154.21hypothetical protein THAOC_02900 [Thalassiosira oc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00770NO27G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00770.1NO27G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00770.1.cds1NO27G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00770.1.cds2NO27G00770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00770.1.cds3NO27G00770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00770.1.cds4NO27G00770.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00770.1.cds5NO27G00770.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00770.1 ID=NO27G00770.1|Name=NO27G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2035bp
CTTGCGTATGTCCTGTGCGTTTCTATTACAGAGGGAGAGGCATGAGACCA
AAATGTGGGCGTGTGGATGGGGTAGTAAGCACAGAATGCGGCGTATCTCT
CGCCAAATGCTCCTGATGATGAGAGCACCGATGGGCTTCACGCTTGTCTT
GCGTACCTTTGTCCCTTGGACTCCACGAGACATCAGAGCATCCATGCAAC
AATTGCTGGTGTACTTGTTTACCCCCTGGAACATCTCTCTCCTTCCACTG
CACCTGGCAGGCAGAGACTGGTCCGCGTGGACACTGTCGGGCGGGTTCTT
GCTTCTTCGCCGACGTTCTTATGTGGCTGAGGGAGCCGCCTTCTTTCGTT
GTGAGATGATGCCTTTTGCACTTGAGGCGAGGATGGACAAGTACCAGACA
GAAGTCCATTGTACTCATAAGCGCAAGGACAAGAGCGCGAATAAGTGTTT
CCGATTGGGTGGTGTCAAGCCCCAAACGGACGGCTACCCTACCCTTGGCA
TTCCTCCATCTGCTTGTGCGGGAATGATGATGGCGGCACGCCACGCGGCA
GCAAGCGAAGCAGCATTTGCTTTCCACGCACCCCACCTGCATACCATTCT
CTAGCAAAGCGACCGCCAGCCTTCGCCTCTGATCGCCCAGGACTCCAGCG
TGTGACCACTCTCCCAGCGCGCCCCAACAAACATCCTTTTTGCCCTCCCC
CATCTTATTCCCCTTCTTCCCTTCCATCACCTCCCCTCTCAGACGTACCT
ACCTTATCATCATGGCCGATGCCGAGAAGGATCCCGAGACCACCGCCACA
GAGGCGAAGGAGGGGGGAGAGGATGCTGGGAGAGAGGGAGAGGGGGCGGC
AGAGGCGGAGAATTATGAGAGCACAGCGATTTTTACGCCCGTGGTGCAGC
TGGACGAGGTAGAAACGAAGACGCATGAGGAGGACGAGGAGACATTATAC
AAGATGCGGTCGAAGCTTTACGTGTTCGGCGAAGCCATGCTAGACAAGGG
ATCAGGAAAGAAGACCTGGCTGGAAAGAGGCATTGGGGAGGTGAAGCTGC
TCAAACACAAGGAGAATCAACGCATCCGCCTGCTCATGCGGCAAGAGAAG
ACGATGAAGGTGATTGCCAATCATATGGTGGACCCCCGCATTGTAATGCA
GCCCAACGTGGGCTCAGATAGGTCTTGGGTGTGGACGGCCTATGACTACG
CTGAGGGAGATTTGCAGGAGGAGGTGTTTGCGCTCAAGTTTGGCAAACCA
CAAGATGCGGAAGAGTTCAAGACGGCTTTTGATGAGGCTAAGAAGGCGAT
GAAGGCCTTCGTCGCGGTGGACGAGGAACCGGAAAAGGAGGGCGATGCCG
GCGCCGCCGAAGAAGCAGCAGAAGCATTCTCGAGTCTGAAAGTTGGTAAG
GAGGGAGAGAAGGCGAAGGCATCTTCACCTGTCAAGCCGGCAGCAGAAAA
ATAGAGGGCGAGGAGATCAAGGAGGATGGAGAAGGAAATGCGCGTCAGAG
GGATGCATGTTTCTGTGCTTTTTACCCCTTTTTCTGTCCTTCTTGGCGTT
TTCCTGTGGAGCGTAGTAGAGAGAGTAAGAGAGGAAGGGAAGGGAGGGAA
GGGAAGGGAGAAAGGAGTGAGCATTTAATGTAATGGAGCCTTGTTGACGA
TGAGCGAAGGAATATGGAGTGGAAGACGAGGAGGCGTGAGATGTGACAGG
CTGGGTAGCAATAGAGAGATCGGGCGCGACCCCTACCTTCCTTGCAGGCA
CTAGGAGAAGGACTGGGAAGGTGTGGACTTGTAGGGAAGGACCCTTGTTT
TGTTCTAGGAATAGAGTAGACGAGAGGCTTGCCGGTCTTGTTCGGGCGGT
AGGGAGAGGGGGACGTTTTTGGTATAAGAGGGAAACCCGCGGTTACCAAA
AAGGAAAGAAAGGAAAAGAGTAAAACAGAAAGCCACAGAATATACAGTGC
CCATGCGCGTTCTCCGTGTAAAAATGCCCACTTGTTGCTAGTGTATCAGT
TCGAACCTTGAGCGCATTATACCGTTTACGCGATA
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protein sequence of NO27G00770.1

>NO27G00770.1-protein ID=NO27G00770.1-protein|Name=NO27G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MADAEKDPETTATEAKEGGEDAGREGEGAAEAENYESTAIFTPVVQLDEV
ETKTHEEDEETLYKMRSKLYVFGEAMLDKGSGKKTWLERGIGEVKLLKHK
ENQRIRLLMRQEKTMKVIANHMVDPRIVMQPNVGSDRSWVWTAYDYAEGD
LQEEVFALKFGKPQDAEEFKTAFDEAKKAMKAFVAVDEEPEKEGDAGAAE
EAAEAFSSLKVGKEGEKAKASSPVKPAAEK*
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mRNA from alignment at chr27:273258..276119+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00770.1 ID=NO27G00770.1|Name=NO27G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2862bp|location=Sequence derived from alignment at chr27:273258..276119+ (Nannochloropsis oceanica)
CTTGCGTATGTCCTGTGCGTTTCTATTACAGAGGGAGAGGCATGAGACCA
AAATGTGGGCGTGTGGATGGGGTAGTAAGCACAGAATGCGGCGTATCTCT
CGCCAAATGCTCCTGATGATGAGAGCACCGATGGGCTTCACGCTTGTCTT
GCGTACCTTTGTCCCTTGGACTCCACGAGACATCAGAGCATCCATGCAAC
AATTGCTGGTGTACTTGTTTACCCCCTGGAACATCTCTCTCCTTCCACTG
CACCTGGCAGGCAGAGACTGGTCCGCGTGGACACTGTCGGGCGGGTTCTT
GCTTCTTCGCCGACGTTCTTATGTGGCTGAGGGAGCCGCCTTCTTTCGTT
GTGAGATGATGCCTTTTGCACTTGAGGCGAGGATGGACAAGTACCAGACA
GAAGTCCATTGTACTCATAAGCGCAAGGACAAGAGCGCGAATAAGTGTTT
CCGATTGGGTGGTGTCAAGCCCCAAACGGACGGCTACCCTACCCTTGGCA
TTCCTCCATCTGCTTGTGCGGGAATGATGATGGCGGCACGCCACGCGGCA
GCAAGCGAAGCAGCATTTGCTTTCCACGCACCCCACCTGCATACCATTCT
CTAGCAAAGCGACCGCCAGCCTTCGCCTCTGATCGCCCAGGACTCCAGCG
TGTGACCACTCTCCCAGCGCGCCCCAACAAACATCCTTTTTGCCCTCCCC
CATCTTATTCCCCTTCTTCCCTTCCATCACCTCCCCTCTCAGACGTACCT
ACCTTATCATCATGGCCGATGCCGAGAAGGATCCCGAGACCACCGCCACA
GAGGCGAAGGAGGGGGGAGAGGATGCTGGGAGAGAGGGAGAGGGGGCGGC
AGAGGCGGAGAATTATGAGAGCACAGCGATTTTTACGCCCGTGGTGCAGC
TGGACGAGGTAGAAACGAAGACGCATGAGGAGGACGAGGAGACATTATAC
AAGATGTGAGTGATTAGAAAGGGTGTGTAGGGCCAGGAGGAAGGGATGGT
GTGATGAGTGTATGCATGTGTGTCACACCGATGGACACTTTTCTCATGTC
CCCCTCCCTCATTTCCTCCGTTCCTCCTACCCTTTGCTCCTCTCCTGCAC
CTTCCCGTCCACCTCATCCTTACTCACTTCTCCGGACTTCTCTAATTTAA
AAAATATTAAAAACCAATCAAAAAGGCGGTCGAAGCTTTACGTGTTCGGC
GAAGCCATGCTAGACAAGGGATCAGGAAAGAAGACCTGGCTGGAAAGAGG
CATTGGGGAGGTGAAGCTGCTCAAGTAAGAAGGGAACGAGGAAAAAAATT
GTAGAAATCATATAGGCCCGATAAATGTTTATTTTTACTACCCCCTTTCC
TATCATGTTTGTCTGACCCTCTACACAGACACAAGGAGAATCAACGCATC
CGCCTGCTCATGCGGCAAGAGAAGACGATGAAGGTATGTCGTGCCGTCCC
TCCGTCCCTCTGTCCCTCTGTCCCTCCGTCCCTCCGTCCCTCCGTCCCTC
CGTTCCTTCGTCCCTCCGTCCCTCTCTTTACCTAGTTTACCTTTGCCAAG
CACATGCCTGTCACATTTCCCCATCTGAACTGCCTTCGATTTAAACTATC
ATATATACAAATATATATATTCTTATTTTATTTTTATTTTTATTGTCATA
CAAAGGTTATTAAAAGATATATTGATTCATATTTGTCTTTGTGCATTCAC
ATATATCTTCATTCATGTTATAGATAAATTGATTGATTCAAAATTATTAA
ATTAAACAAAAAAAACAGGTGATTGCCAATCATATGGTGGACCCCCGCAT
TGTAATGCAGCCCAACGTGGGCTCAGATAGGTCTTGGGTGTGGACGGCCT
ATGACTACGCTGAGGGAGATTTGCAGGAGGAGGTGTTTGCGCTCAAGTTT
GGCAAACCACAAGATGCGGAAGAGTTCAAGACGGCTTTTGATGAGGCTAA
GAAGGCGATGAAGGCCTTCGTCGCGGGTAAGAGCTATTTTTATTTCCTTC
CTTCTATCTTCTTTCCCCCCCTTTTTAACTGTTGTTTTAGAAAAAAATTA
ATTTGCTTTGTTCTCATTGTCATTTTCTAAATGTTATCATCATCTCATCT
TATTGCATCACCTTTGCTCTTCCATGCCTCAAAAATTACCACAGTGGACG
AGGAACCGGAAAAGGAGGGCGATGCCGGCGCCGCCGAAGAAGCAGCAGAA
GCATTCTCGAGTCTGAAAGTTGGTAAGGAGGGAGAGAAGGCGAAGGCATC
TTCACCTGTCAAGCCGGCAGCAGAAAAATAGAGGGCGAGGAGATCAAGGA
GGATGGAGAAGGAAATGCGCGTCAGAGGGATGCATGTTTCTGTGCTTTTT
ACCCCTTTTTCTGTCCTTCTTGGCGTTTTCCTGTGGAGCGTAGTAGAGAG
AGTAAGAGAGGAAGGGAAGGGAGGGAAGGGAAGGGAGAAAGGAGTGAGCA
TTTAATGTAATGGAGCCTTGTTGACGATGAGCGAAGGAATATGGAGTGGA
AGACGAGGAGGCGTGAGATGTGACAGGCTGGGTAGCAATAGAGAGATCGG
GCGCGACCCCTACCTTCCTTGCAGGCACTAGGAGAAGGACTGGGAAGGTG
TGGACTTGTAGGGAAGGACCCTTGTTTTGTTCTAGGAATAGAGTAGACGA
GAGGCTTGCCGGTCTTGTTCGGGCGGTAGGGAGAGGGGGACGTTTTTGGT
ATAAGAGGGAAACCCGCGGTTACCAAAAAGGAAAGAAAGGAAAAGAGTAA
AACAGAAAGCCACAGAATATACAGTGCCCATGCGCGTTCTCCGTGTAAAA
ATGCCCACTTGTTGCTAGTGTATCAGTTCGAACCTTGAGCGCATTATACC
GTTTACGCGATA
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Coding sequence (CDS) from alignment at chr27:273258..276119+

>NO27G00770.1 ID=NO27G00770.1|Name=NO27G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr27:273258..276119+ (Nannochloropsis oceanica)
ATGGCCGATGCCGAGAAGGATCCCGAGACCACCGCCACAGAGGCGAAGGA
GGGGGGAGAGGATGCTGGGAGAGAGGGAGAGGGGGCGGCAGAGGCGGAGA
ATTATGAGAGCACAGCGATTTTTACGCCCGTGGTGCAGCTGGACGAGGTA
GAAACGAAGACGCATGAGGAGGACGAGGAGACATTATACAAGATGCGGTC
GAAGCTTTACGTGTTCGGCGAAGCCATGCTAGACAAGGGATCAGGAAAGA
AGACCTGGCTGGAAAGAGGCATTGGGGAGGTGAAGCTGCTCAAACACAAG
GAGAATCAACGCATCCGCCTGCTCATGCGGCAAGAGAAGACGATGAAGGT
GATTGCCAATCATATGGTGGACCCCCGCATTGTAATGCAGCCCAACGTGG
GCTCAGATAGGTCTTGGGTGTGGACGGCCTATGACTACGCTGAGGGAGAT
TTGCAGGAGGAGGTGTTTGCGCTCAAGTTTGGCAAACCACAAGATGCGGA
AGAGTTCAAGACGGCTTTTGATGAGGCTAAGAAGGCGATGAAGGCCTTCG
TCGCGGTGGACGAGGAACCGGAAAAGGAGGGCGATGCCGGCGCCGCCGAA
GAAGCAGCAGAAGCATTCTCGAGTCTGAAAGTTGGTAAGGAGGGAGAGAA
GGCGAAGGCATCTTCACCTGTCAAGCCGGCAGCAGAAAAATAG
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Synonyms
Publications