NO27G00700.1, NO27G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00700.1
Unique NameNO27G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr27:258345..259259 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:258345..259259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO27G00700.1 vs.
Match: XP_004351510.1 (silent information regulator protein Sir2, putative [Acanthamoeba castellanii str. Neff]; ELR22733.1 silent information regulator protein Sir2, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 172.9 bits (437), Expect = 1.500e-39
Identity = 117/299 (39.13%), Postives = 156/299 (52.17%), Query Frame = 0 
Query:    1 MSADSGISTFRKDKNSFWGGIGGGMALAYFGTQVGWTLTPGLAWAKYVDMFLTPIAVARPHEGHYALVALVEERKENTEGGRDVGRGREGEVKVITMNVDDLHERAGGTGWEEEGKSETEKNWRRVVHLHGSVGRNICAKHGLLSGLPYFPRKEERCEGQNRGSSVGETRGKSASDSEVKQVLNEYKRFRCPSCHRAPRPDIVLFGESLPQDEFSLATRAIDRLNPATNDALLVIGTTGGVYPAASLPERAL-MRGVRIIEVNMHPSPISEAADVFLQGRAKEVLPALLERVREKREKE 299
            +SA+SGI+TFR  +   W    G   LA+FGT VGW  TPGLAW  Y+  F  PIA ARP+ GHYA+  L +   +    G+DV R       ++T NVD LH+RA        G  ET      V  LHG+V R+IC+KH      PY        E  +              D        +  R +   C    RPD VLF ESLP   ++ A  A+     ++ D +LV+GT+G VYPAASLPE AL  RGV +IE+N  PS IS    +FL+G + ++LP L++ VRE+ + E
Sbjct:   40 ISAESGIATFRDPEMGLWTSKIG---LAWFGTPVGWRWTPGLAWRMYLSRFRDPIARARPNPGHYAIARLEQLIDQGQALGKDVPR----HFDILTQNVDGLHQRA--------GNKETS-----VAELHGTVNRHICSKH--RHPHPYVIDPSTLAEDYD-----------PEKDEFFTHDSKKVPRCQVEGCGSYLRPDAVLFMESLPSHAWNAADHAV-----SSGDVMLVVGTSGVVYPAASLPEEALEKRGVHVIEINPVPSAISSRVSMFLKGPSGQILPPLVDMVRERWQLE 300
The following BLAST results are available for this feature:
BLAST of NO27G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_004351510.11.500e-3939.13silent information regulator protein Sir2, putativ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00700NO27G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00700.1NO27G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00700.1.cds1NO27G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00700.1 ID=NO27G00700.1|Name=NO27G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ATGAGCGCGGATAGTGGCATTTCAACTTTTCGAAAAGACAAGAACAGCTT
CTGGGGTGGGATAGGTGGAGGGATGGCGTTAGCTTATTTTGGAACCCAGG
TGGGGTGGACCTTGACTCCTGGGTTGGCATGGGCGAAATATGTGGACATG
TTTTTGACGCCCATTGCGGTTGCTCGCCCCCACGAGGGGCACTATGCATT
GGTGGCGTTGGTGGAGGAGAGGAAGGAAAATACGGAGGGAGGGAGGGACG
TAGGGAGAGGGAGGGAGGGAGAAGTGAAAGTGATTACGATGAATGTGGAT
GACTTGCACGAGCGGGCGGGGGGAACGGGGTGGGAGGAGGAGGGAAAGAG
TGAGACCGAGAAGAATTGGAGGAGGGTTGTTCATTTGCACGGAAGCGTGG
GACGGAATATTTGTGCGAAGCATGGGCTCTTGTCAGGACTGCCGTATTTT
CCACGTAAGGAAGAAAGATGCGAAGGACAAAACAGGGGCAGCAGCGTTGG
TGAGACACGAGGGAAGTCAGCTAGTGATTCCGAGGTAAAACAAGTGCTTA
ATGAATACAAACGATTCCGATGCCCTTCCTGCCACCGCGCGCCTCGTCCT
GACATCGTCCTCTTCGGCGAGAGTCTTCCCCAAGACGAATTTTCGCTTGC
CACCCGCGCCATCGACAGACTTAACCCAGCCACCAATGATGCGCTGCTCG
TCATAGGAACGACAGGAGGAGTATATCCGGCAGCAAGCCTACCGGAAAGA
GCCTTAATGAGAGGAGTGAGAATTATAGAGGTCAACATGCACCCCTCGCC
AATCTCGGAAGCAGCAGATGTCTTTTTGCAGGGAAGGGCGAAGGAAGTAC
TACCAGCGTTACTAGAGAGAGTACGAGAGAAGAGGGAGAAGGAAAAAAAG
GGGGAAGAACGATGA
back to top

protein sequence of NO27G00700.1

>NO27G00700.1-protein ID=NO27G00700.1-protein|Name=NO27G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MSADSGISTFRKDKNSFWGGIGGGMALAYFGTQVGWTLTPGLAWAKYVDM
FLTPIAVARPHEGHYALVALVEERKENTEGGRDVGRGREGEVKVITMNVD
DLHERAGGTGWEEEGKSETEKNWRRVVHLHGSVGRNICAKHGLLSGLPYF
PRKEERCEGQNRGSSVGETRGKSASDSEVKQVLNEYKRFRCPSCHRAPRP
DIVLFGESLPQDEFSLATRAIDRLNPATNDALLVIGTTGGVYPAASLPER
ALMRGVRIIEVNMHPSPISEAADVFLQGRAKEVLPALLERVREKREKEKK
GEER*
back to top

mRNA from alignment at chr27:258345..259259+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00700.1 ID=NO27G00700.1|Name=NO27G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp|location=Sequence derived from alignment at chr27:258345..259259+ (Nannochloropsis oceanica)
ATGAGCGCGGATAGTGGCATTTCAACTTTTCGAAAAGACAAGAACAGCTT
CTGGGGTGGGATAGGTGGAGGGATGGCGTTAGCTTATTTTGGAACCCAGG
TGGGGTGGACCTTGACTCCTGGGTTGGCATGGGCGAAATATGTGGACATG
TTTTTGACGCCCATTGCGGTTGCTCGCCCCCACGAGGGGCACTATGCATT
GGTGGCGTTGGTGGAGGAGAGGAAGGAAAATACGGAGGGAGGGAGGGACG
TAGGGAGAGGGAGGGAGGGAGAAGTGAAAGTGATTACGATGAATGTGGAT
GACTTGCACGAGCGGGCGGGGGGAACGGGGTGGGAGGAGGAGGGAAAGAG
TGAGACCGAGAAGAATTGGAGGAGGGTTGTTCATTTGCACGGAAGCGTGG
GACGGAATATTTGTGCGAAGCATGGGCTCTTGTCAGGACTGCCGTATTTT
CCACGTAAGGAAGAAAGATGCGAAGGACAAAACAGGGGCAGCAGCGTTGG
TGAGACACGAGGGAAGTCAGCTAGTGATTCCGAGGTAAAACAAGTGCTTA
ATGAATACAAACGATTCCGATGCCCTTCCTGCCACCGCGCGCCTCGTCCT
GACATCGTCCTCTTCGGCGAGAGTCTTCCCCAAGACGAATTTTCGCTTGC
CACCCGCGCCATCGACAGACTTAACCCAGCCACCAATGATGCGCTGCTCG
TCATAGGAACGACAGGAGGAGTATATCCGGCAGCAAGCCTACCGGAAAGA
GCCTTAATGAGAGGAGTGAGAATTATAGAGGTCAACATGCACCCCTCGCC
AATCTCGGAAGCAGCAGATGTCTTTTTGCAGGGAAGGGCGAAGGAAGTAC
TACCAGCGTTACTAGAGAGAGTACGAGAGAAGAGGGAGAAGGAAAAAAAG
GGGGAAGAACGATGA
back to top

Coding sequence (CDS) from alignment at chr27:258345..259259+

>NO27G00700.1 ID=NO27G00700.1|Name=NO27G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr27:258345..259259+ (Nannochloropsis oceanica)
ATGAGCGCGGATAGTGGCATTTCAACTTTTCGAAAAGACAAGAACAGCTT
CTGGGGTGGGATAGGTGGAGGGATGGCGTTAGCTTATTTTGGAACCCAGG
TGGGGTGGACCTTGACTCCTGGGTTGGCATGGGCGAAATATGTGGACATG
TTTTTGACGCCCATTGCGGTTGCTCGCCCCCACGAGGGGCACTATGCATT
GGTGGCGTTGGTGGAGGAGAGGAAGGAAAATACGGAGGGAGGGAGGGACG
TAGGGAGAGGGAGGGAGGGAGAAGTGAAAGTGATTACGATGAATGTGGAT
GACTTGCACGAGCGGGCGGGGGGAACGGGGTGGGAGGAGGAGGGAAAGAG
TGAGACCGAGAAGAATTGGAGGAGGGTTGTTCATTTGCACGGAAGCGTGG
GACGGAATATTTGTGCGAAGCATGGGCTCTTGTCAGGACTGCCGTATTTT
CCACGTAAGGAAGAAAGATGCGAAGGACAAAACAGGGGCAGCAGCGTTGG
TGAGACACGAGGGAAGTCAGCTAGTGATTCCGAGGTAAAACAAGTGCTTA
ATGAATACAAACGATTCCGATGCCCTTCCTGCCACCGCGCGCCTCGTCCT
GACATCGTCCTCTTCGGCGAGAGTCTTCCCCAAGACGAATTTTCGCTTGC
CACCCGCGCCATCGACAGACTTAACCCAGCCACCAATGATGCGCTGCTCG
TCATAGGAACGACAGGAGGAGTATATCCGGCAGCAAGCCTACCGGAAAGA
GCCTTAATGAGAGGAGTGAGAATTATAGAGGTCAACATGCACCCCTCGCC
AATCTCGGAAGCAGCAGATGTCTTTTTGCAGGGAAGGGCGAAGGAAGTAC
TACCAGCGTTACTAGAGAGAGTACGAGAGAAGAGGGAGAAGGAAAAAAAG
GGGGAAGAACGATGA
back to top
Synonyms
Publications