NO27G00680.1, NO27G00680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00680.1
Unique NameNO27G00680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length831
Alignment locationchr27:256499..257471 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:256499..257471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00680.1 vs.
Match: EWM21023.1 (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 351.3 bits (900), Expect = 2.800e-93
Identity = 189/235 (80.43%), Postives = 208/235 (88.51%), Query Frame = 0 
Query:   42 MSTPEMELQNASLQAAGRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILAALNRISFLRFDYGGASISLIAIIILFALLGLLFSANDSLNARASENQALFFAEKKELRCKRWRAERNFWLSVLGCVLWLVLLRIQTLLMDVGPLEERLKGVEEERDSLVQEKKEKEGVLERLRAAVEEGGREGKEKEGVILALKAKVGEMDTLKKKLATVEAENEDLKRGAKKTS 277
            M+  E E  NA +Q+ GRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGIL ALNRISFLRFDYGGASISLIAIIIL ALLGL+FSANDSLNAR +ENQA FFAEKKELRCKRWRAERNFWLSVLGCVLW+VLLRIQTLLMDVGPLEERLK  EEERD+  +E KEKEGVL RLR AVE+G REGKEKEGVIL L+ K+GE++ LKK++  +E E E L++G+KKTS
Sbjct:   27 MAIYEGEQPNAYMQSTGRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGILNALNRISFLRFDYGGASISLIAIIILIALLGLIFSANDSLNARRAENQAHFFAEKKELRCKRWRAERNFWLSVLGCVLWVVLLRIQTLLMDVGPLEERLKRAEEERDAAAKESKEKEGVLRRLREAVEQGVREGKEKEGVILTLREKMGEVEGLKKRVVILEEEKEALRKGSKKTS 261
The following BLAST results are available for this feature:
BLAST of NO27G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21023.12.800e-9380.43expressed unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00680NO27G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00680.1NO27G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00680.1.cds1NO27G00680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00680.1.cds2NO27G00680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00680.1 ID=NO27G00680.1|Name=NO27G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=831bp
ATGAAGCATTGTAGTACTTTTCACCAGAAGGAGCGACCAATTCCGACAAC
CTCTTTTCCAACCTCCACAATCACAGACATTATTCAGGCAGCAGGAGCGC
TGTTCCAAGCGCCTGATTCAGCGATGTCCACCCCCGAAATGGAGCTACAA
AACGCCTCGCTTCAAGCGGCGGGCCGCTCCGGGTCAAATCCCTGGCAGCT
TTTCCTCTATTTCATCTTTCCCATTCCTCTGGTCTTTCTAGTCCTCATCT
CGTTGCCCTTTCCGGCGCGGTATCGGGCCAAGATTCGCGTGGGTATTTTG
GCGGCCTTGAACAGGATTTCTTTCCTTCGCTTCGACTACGGTGGGGCCAG
CATTTCGCTCATCGCCATCATCATCCTTTTTGCCTTGCTGGGCCTTTTAT
TTTCAGCCAATGACTCTCTGAATGCCCGTGCCAGTGAAAACCAAGCATTA
TTCTTCGCAGAAAAGAAAGAATTGCGCTGTAAGCGTTGGCGGGCGGAGCG
AAATTTCTGGTTGTCCGTTTTGGGCTGTGTCTTGTGGTTGGTCTTGTTGA
GAATTCAGACTTTGCTCATGGACGTCGGGCCGTTGGAAGAGAGGCTGAAG
GGCGTGGAGGAGGAGAGGGACAGCTTGGTGCAGGAAAAGAAAGAGAAGGA
AGGGGTGCTCGAGCGCTTGCGGGCGGCAGTGGAGGAGGGAGGGAGGGAAG
GCAAGGAGAAGGAAGGGGTGATTTTGGCGTTGAAAGCAAAGGTCGGGGAG
ATGGACACGTTGAAGAAGAAATTGGCTACAGTGGAGGCTGAGAACGAAGA
TCTGAAGAGGGGGGCAAAGAAGACTAGCTGA
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protein sequence of NO27G00680.1

>NO27G00680.1-protein ID=NO27G00680.1-protein|Name=NO27G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MKHCSTFHQKERPIPTTSFPTSTITDIIQAAGALFQAPDSAMSTPEMELQ
NASLQAAGRSGSNPWQLFLYFIFPIPLVFLVLISLPFPARYRAKIRVGIL
AALNRISFLRFDYGGASISLIAIIILFALLGLLFSANDSLNARASENQAL
FFAEKKELRCKRWRAERNFWLSVLGCVLWLVLLRIQTLLMDVGPLEERLK
GVEEERDSLVQEKKEKEGVLERLRAAVEEGGREGKEKEGVILALKAKVGE
MDTLKKKLATVEAENEDLKRGAKKTS*
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mRNA from alignment at chr27:256499..257471+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00680.1 ID=NO27G00680.1|Name=NO27G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=973bp|location=Sequence derived from alignment at chr27:256499..257471+ (Nannochloropsis oceanica)
ATGAAGCATTGTAGTACTTTTCACCAGAAGGAGCGACCAATTCCGACAAC
CTCTTTTCCAACCTCCACAATCACAGACATTATTCAGGCAGCAGGAGCGC
TGTTCCAAGCGCCTGATTCAGCGATGTCCACCCCCGAAATGGAGCTACAA
AACGCCTCGCTTCAAGCGGCGGGCCGCTCCGGGTCAAATCCCTGGCAGCT
TTTCCTCTATTTCATCTTTCCCATTCCTCTGGTCTTTCTAGTCCTCATCT
CGTTGCCCTTTCCGGCGCGGTATCGGGCCAAGATTCGCGTGGGTATTTTG
GTACGTCTTATGGGTCCTTATGATTGTCTGTAGGTGTAAAAATATGTGTG
TATGATGAAAGGAGGAGGCTCGACGTCAGGCATCAACATGCATGGCTCAA
CTGGCCTCCCTCCGCTCCCTCCTTCTTCTCCTTCCTTCCTAGGCGGCCTT
GAACAGGATTTCTTTCCTTCGCTTCGACTACGGTGGGGCCAGCATTTCGC
TCATCGCCATCATCATCCTTTTTGCCTTGCTGGGCCTTTTATTTTCAGCC
AATGACTCTCTGAATGCCCGTGCCAGTGAAAACCAAGCATTATTCTTCGC
AGAAAAGAAAGAATTGCGCTGTAAGCGTTGGCGGGCGGAGCGAAATTTCT
GGTTGTCCGTTTTGGGCTGTGTCTTGTGGTTGGTCTTGTTGAGAATTCAG
ACTTTGCTCATGGACGTCGGGCCGTTGGAAGAGAGGCTGAAGGGCGTGGA
GGAGGAGAGGGACAGCTTGGTGCAGGAAAAGAAAGAGAAGGAAGGGGTGC
TCGAGCGCTTGCGGGCGGCAGTGGAGGAGGGAGGGAGGGAAGGCAAGGAG
AAGGAAGGGGTGATTTTGGCGTTGAAAGCAAAGGTCGGGGAGATGGACAC
GTTGAAGAAGAAATTGGCTACAGTGGAGGCTGAGAACGAAGATCTGAAGA
GGGGGGCAAAGAAGACTAGCTGA
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Coding sequence (CDS) from alignment at chr27:256499..257471+

>NO27G00680.1 ID=NO27G00680.1|Name=NO27G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=831bp|location=Sequence derived from alignment at chr27:256499..257471+ (Nannochloropsis oceanica)
ATGAAGCATTGTAGTACTTTTCACCAGAAGGAGCGACCAATTCCGACAAC
CTCTTTTCCAACCTCCACAATCACAGACATTATTCAGGCAGCAGGAGCGC
TGTTCCAAGCGCCTGATTCAGCGATGTCCACCCCCGAAATGGAGCTACAA
AACGCCTCGCTTCAAGCGGCGGGCCGCTCCGGGTCAAATCCCTGGCAGCT
TTTCCTCTATTTCATCTTTCCCATTCCTCTGGTCTTTCTAGTCCTCATCT
CGTTGCCCTTTCCGGCGCGGTATCGGGCCAAGATTCGCGTGGGTATTTTG
GCGGCCTTGAACAGGATTTCTTTCCTTCGCTTCGACTACGGTGGGGCCAG
CATTTCGCTCATCGCCATCATCATCCTTTTTGCCTTGCTGGGCCTTTTAT
TTTCAGCCAATGACTCTCTGAATGCCCGTGCCAGTGAAAACCAAGCATTA
TTCTTCGCAGAAAAGAAAGAATTGCGCTGTAAGCGTTGGCGGGCGGAGCG
AAATTTCTGGTTGTCCGTTTTGGGCTGTGTCTTGTGGTTGGTCTTGTTGA
GAATTCAGACTTTGCTCATGGACGTCGGGCCGTTGGAAGAGAGGCTGAAG
GGCGTGGAGGAGGAGAGGGACAGCTTGGTGCAGGAAAAGAAAGAGAAGGA
AGGGGTGCTCGAGCGCTTGCGGGCGGCAGTGGAGGAGGGAGGGAGGGAAG
GCAAGGAGAAGGAAGGGGTGATTTTGGCGTTGAAAGCAAAGGTCGGGGAG
ATGGACACGTTGAAGAAGAAATTGGCTACAGTGGAGGCTGAGAACGAAGA
TCTGAAGAGGGGGGCAAAGAAGACTAGCTGA
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Synonyms
Publications