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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr27 | genome | chr27:241967..244647 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO27G00650.1 vs.
Match: EWM21025.1 (Lipase, class 3 [Nannochloropsis gaditana]) HSP 1 Score: 496.9 bits (1278), Expect = 1.100e-136 Identity = 309/759 (40.71%), Postives = 410/759 (54.02%), Query Frame = 0
Query: 33 LVLLF-CLLNPVVSSSLREGRQQQQQQQQ---------------SQE-------------VEETRIRENTKQEPAEAMVEIDALGQQQQQQQQHEREEQFTAQSPPKPLQRDREGAGIARLLQRWLDEEDGATRRDLHDNEEEHKDKDIEKEENDALALADLGNSTGNLQVYKALRETAAAHNITARDFWTLQRLILTLSFNRYGNKPTIFPMCEIYKIVGPLRLHCVFIVSSYRFYTAQPPSLRKVATERSYSIYSGGEQEEKQQQEQEPPHVLQDIGVVPEFIVDKPLIEKERPVYRWCWRQIVNMYGFTYRWNDEGVEAATMEQQQHTQEGETRDKDGGAPPPPCNGKENSSSSSSTDSAPLLPPEPGYGNQSLLWVEGPMDIPFRRPIGQVFTYFPPPCSSSSGTGSRNRSSRSDGEQKYEGRGGGHVEGGGPELVVVIRGTLYSEEWTANFRLQRADEDEVEKYDFEGIMVPKGFFGLFTEVLPQVNDALVLHGNSHITRLTLTGHSLGASIALLLAAYFGQKRPDLKISLITFGGPNTVDNILFENYWNHQINVRQVFYIGSGLVPRDERDRWLEGEREERRQQQQQYEYQDREQPSDSH--LSFGIGDMVAQMPPDCTAVSPCPLLLFHATNGLTTNDDRSTSPSGFDIENNFFTRLRLARPPGSIVFYAYDLKGRGSVSTWLAYEDFLTHVWTRLDRGVISSHVCAYACWVSSLGGGKNGEETRCFFPEEGEGRGLGEICDLQLTRGERLG 761
LVLLF CL SSSLR+ R+QQ Q Q+ S E + + + PA+ + E ++L ++Q Q +S + R LQ WLD D D +++ E + ALAL L + +A + AAA+N+T + + L LT S T +PMCE++K+VGPLRLHC + S F T+ PPSLR +TE + + + PPHVL+DIG+VP++I DK L+++ERPVYRWCWRQIVN YG+T+RW+D G+E A Q+ E +DG PPP PLLP PGYGNQ LLW+ + +RPIGQ FTY+PP E K EG GG ELVVV+RGT++SEEW++NFRL A +D + Y EG ++PKGFF +F ++PQ+N AL HG + LT TGHSLG S++LLL Y+ ++ PDL++S++TFG PN D + FE +++ +IN+RQ+ YIGSGL+P DER P H SFG+GD+ AQMPPDCTAVSPCPL LF + +++ + F R++LAR PGS+V +A DL GR SV +WLAYEDF TRLD G+I++HVCAYACWVS+ G G GEETRC+FPEEGEGR GEICDL L+R E G
Sbjct: 21 LVLLFVCLSRRTTSSSLRDARRQQPQHQEPDIFRINGDKHQNLHSDEPAAIIADVGGRGGINAVQKSGQSWHSPAKGLGEGESLEPEKQSSPQENAPLSLHHESVENIYRSPR--------LQEWLDRVDSTYSAD-----------EVDVETSKALALRYLEERSDLNDYERAFHDLAAAYNLTNAHKFPEKALRLTQSMGG----ETRYPMCEVFKVVGPLRLHCPVVALSLLFVTSTPPSLRLFSTEHD-DYFPSFPWRDGDRTAVPPPHVLEDIGIVPDYIEDKALLDRERPVYRWCWRQIVNFYGYTHRWHDLGLERA--------QKVEEARRDGFPSPPPSR------------PLPLLPAHPGYGNQRLLWLPEEEN-RVQRPIGQAFTYYPP------------------SEGKAEGAGGE------AELVVVLRGTVFSEEWSSNFRLHEASQDVLRAYGMEGAIIPKGFFAMFQALVPQINAALAAHGRA-FKGLTFTGHSLGGSLSLLLGTYYARQHPDLRLSIVTFGAPNVADAVFFERHYDTRINLRQLTYIGSGLLPPDERGA---------------------SSPPSPHPAYSFGLGDIFAQMPPDCTAVSPCPLFLFPVGDSTLQ-----------ELKGDMFKRIQLARAPGSVVIHARDLAGRASVDSWLAYEDFAVQADTRLDAGLIATHVCAYACWVSTGGEGAAGEETRCYFPEEGEGRAEGEICDLLLSRSEMFG 677
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO27G00650.1 ID=NO27G00650.1|Name=NO27G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2425bp ATGCCAGGTCGCCTGATTGTTTCAGTCTGCGGCATGCCCTTGTGTCGGGC GCGCCAGCCGCCGTGGCTGCGACAGCGGGCACCAGTTGTGGTTTTGCTTG TCCTGCTTTTCTGTTTGCTCAATCCCGTCGTCTCGTCATCACTGCGGGAA GGACGGCAGCAGCAGCAGCAGCAGCAGCAGTCGCAGGAGGTGGAGGAGAC AAGAATACGTGAAAATACCAAGCAGGAGCCGGCTGAGGCCATGGTAGAGA TCGATGCACTGGGCCAGCAGCAGCAGCAGCAGCAGCAGCACGAGCGAGAG GAGCAGTTCACAGCACAATCACCACCCAAGCCCCTCCAACGCGACCGAGA AGGCGCTGGCATTGCCCGCCTCCTACAAAGATGGCTAGACGAAGAGGATG GAGCAACGAGGCGAGATCTTCATGATAATGAGGAGGAGCATAAAGACAAG GACATAGAAAAAGAGGAGAATGATGCGTTAGCCTTAGCTGACCTAGGCAA CAGCACAGGCAACTTACAGGTATACAAAGCCCTTCGGGAAACTGCTGCGG CCCATAATATTACGGCCCGCGATTTTTGGACTTTGCAACGTTTGATTTTA ACACTGTCTTTTAATAGATATGGGAACAAGCCGACCATCTTCCCGATGTG TGAAATATATAAAATAGTGGGGCCTTTGCGGTTGCATTGTGTCTTCATTG TCTCGTCGTATCGGTTTTACACGGCGCAGCCGCCGTCGTTGAGGAAGGTG GCGACTGAACGCTCGTACAGTATTTATAGCGGAGGAGAGCAGGAGGAGAA GCAGCAGCAGGAGCAGGAGCCACCACACGTTTTACAAGACATTGGTGTGG TGCCTGAATTCATCGTTGACAAACCTTTAATTGAGAAGGAACGGCCTGTC TATCGATGGTGCTGGCGGCAGATTGTAAATATGTATGGCTTTACGTATCG GTGGAATGATGAAGGAGTAGAAGCGGCGACGATGGAACAGCAGCAACACA CCCAAGAGGGAGAAACAAGGGACAAAGATGGTGGTGCTCCTCCACCTCCC TGCAATGGTAAAGAGAACAGCAGCAGCAGTAGCAGCACTGACAGCGCTCC CCTCCTTCCTCCCGAACCTGGCTATGGGAATCAGAGCCTGCTGTGGGTGG AGGGGCCAATGGACATTCCCTTTCGACGGCCCATTGGTCAAGTATTTACC TACTTCCCTCCCCCTTGCAGTAGTAGTAGTGGTACTGGTTCCAGAAATAG GAGTAGCAGGAGTGATGGTGAACAAAAGTACGAGGGGAGAGGAGGAGGAC ATGTAGAGGGAGGAGGTCCTGAGCTGGTGGTTGTGATAAGAGGGACATTA TACAGTGAGGAATGGACGGCTAATTTTAGGTTGCAGCGGGCAGATGAGGA TGAGGTGGAGAAGTATGATTTTGAGGGTATTATGGTACCGAAGGGTTTTT TTGGGTTATTTACTGAAGTACTTCCGCAGGTCAATGATGCCCTTGTCCTC CACGGCAACAGCCACATCACTCGGCTGACACTCACCGGCCATTCACTGGG CGCCAGCATTGCGCTTCTCCTCGCGGCATATTTCGGTCAAAAAAGACCCG ACTTAAAAATATCCCTCATAACATTTGGTGGGCCCAACACCGTCGATAAC ATATTGTTTGAAAACTACTGGAACCATCAAATAAATGTGCGCCAAGTGTT TTATATCGGCTCGGGGCTCGTGCCTCGGGACGAGAGAGACAGATGGTTGG AGGGAGAGAGAGAAGAGAGACGGCAGCAGCAGCAGCAGTACGAGTATCAG GATCGTGAACAACCTTCTGATTCCCACTTGAGCTTTGGGATCGGGGACAT GGTTGCACAGATGCCCCCAGACTGTACTGCTGTATCCCCCTGTCCCTTGC TCCTCTTCCACGCCACCAATGGTCTGACGACCAATGATGACCGCAGTACA AGTCCCAGTGGCTTCGATATTGAAAACAATTTCTTCACGCGTCTCAGGCT GGCGCGTCCGCCGGGGTCGATTGTTTTTTATGCTTACGACTTAAAGGGAC GTGGCTCTGTGAGCACATGGTTGGCGTACGAAGACTTTTTGACGCATGTC TGGACAAGATTAGATCGTGGTGTAATTTCAAGTCATGTTTGCGCGTACGC GTGTTGGGTATCTTCGCTGGGAGGTGGAAAGAATGGCGAAGAAACGCGAT GTTTTTTCCCGGAGGAAGGGGAGGGACGAGGCTTGGGGGAGATCTGTGAT TTACAATTGACGCGAGGTGAGCGTTTGGGAAAAACGCATCTTTAATTAGA CCGAGAAAATAGGGGAGGAGGGAGTGTGAAATGTTGGAGAGCTTGAAAAA ATAAGGGCTCTAAATATTTTCAAGCAAGTCAATGAGAGGAGTATCATAAA ATAAGTGGCATCCGGAGGTCTCGAG back to topprotein sequence of NO27G00650.1 >NO27G00650.1-protein ID=NO27G00650.1-protein|Name=NO27G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=765bp MPGRLIVSVCGMPLCRARQPPWLRQRAPVVVLLVLLFCLLNPVVSSSLRE GRQQQQQQQQSQEVEETRIRENTKQEPAEAMVEIDALGQQQQQQQQHERE EQFTAQSPPKPLQRDREGAGIARLLQRWLDEEDGATRRDLHDNEEEHKDK DIEKEENDALALADLGNSTGNLQVYKALRETAAAHNITARDFWTLQRLIL TLSFNRYGNKPTIFPMCEIYKIVGPLRLHCVFIVSSYRFYTAQPPSLRKV ATERSYSIYSGGEQEEKQQQEQEPPHVLQDIGVVPEFIVDKPLIEKERPV YRWCWRQIVNMYGFTYRWNDEGVEAATMEQQQHTQEGETRDKDGGAPPPP CNGKENSSSSSSTDSAPLLPPEPGYGNQSLLWVEGPMDIPFRRPIGQVFT YFPPPCSSSSGTGSRNRSSRSDGEQKYEGRGGGHVEGGGPELVVVIRGTL YSEEWTANFRLQRADEDEVEKYDFEGIMVPKGFFGLFTEVLPQVNDALVL HGNSHITRLTLTGHSLGASIALLLAAYFGQKRPDLKISLITFGGPNTVDN ILFENYWNHQINVRQVFYIGSGLVPRDERDRWLEGEREERRQQQQQYEYQ DREQPSDSHLSFGIGDMVAQMPPDCTAVSPCPLLLFHATNGLTTNDDRST SPSGFDIENNFFTRLRLARPPGSIVFYAYDLKGRGSVSTWLAYEDFLTHV WTRLDRGVISSHVCAYACWVSSLGGGKNGEETRCFFPEEGEGRGLGEICD LQLTRGERLGKTHL* back to topmRNA from alignment at chr27:241967..244647- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO27G00650.1 ID=NO27G00650.1|Name=NO27G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2681bp|location=Sequence derived from alignment at chr27:241967..244647- (Nannochloropsis oceanica) ATGCCAGGTCGCCTGATTGTTTCAGTCTGCGGCATGCCCTTGTGTCGGGC
GCGCCAGCCGCCGTGGCTGCGACAGCGGGCACCAGTTGTGGTTTTGCTTG
TCCTGCTTTTCTGTTTGCTCAATCCCGTCGTCTCGTCATCACTGCGGGAA
GGACGGCAGCAGCAGCAGCAGCAGCAGCAGTCGCAGGAGGTGGAGGAGAC
AAGAATACGTGAAAATACCAAGCAGGAGCCGGCTGAGGCCATGGTAGAGA
TCGATGCACTGGGCCAGCAGCAGCAGCAGCAGCAGCAGCACGAGCGAGAG
GAGCAGTTCACAGCACAATCACCACCCAAGCCCCTCCAACGCGACCGAGA
AGGCGCTGGCATTGCCCGCCTCCTACAAAGATGGCTAGACGAAGAGGATG
GAGCAACGAGGCGAGATCTTCATGATAATGAGGAGGAGCATAAAGACAAG
GACATAGAAAAAGAGGAGAATGATGCGTTAGCCTTAGCTGACCTAGGCAA
CAGCACAGGCAACTTACAGGTATACAAAGCCCTTCGGGAAACTGCTGCGG
CCCATAATATTACGGCCCGCGATTTTTGGACTTTGCAACGTTTGATTTTA
ACACTGTCTTTTAATAGATATGGGAACAAGCCGACCATCTTCCCGATGTG
TGAAATATATAAAATAGTGGGGCCTTTGCGGTTGCATTGTGTCTTCATTG
TCTCGTCGTATCGGTTTTACACGGCGCAGCCGCCGTCGTTGAGGAAGGTG
GCGACTGAACGCTCGTACAGTATTTATAGCGGAGGAGAGCAGGAGGAGAA
GCAGCAGCAGGAGCAGGAGCCACCACACGTTTTACAAGACATTGGTGTGG
TGCCTGAATTCATCGTTGACAAACCTTTAATTGAGAAGGAACGGCCTGTC
TATCGATGGTGCTGGCGGCAGGTACGATTGTCTATGAATGAGGAGGGAGA
AATGGAGAGAGAGAGGGAGGGAGGGCTGAAGTGACAGAATACGAACCATG
TAATTACCCTTTTCCTCCCTCCCTCCCTTCCTCGGCAGATTGTAAATATG
TATGGCTTTACGTATCGGTGGAATGATGAAGGAGTAGAAGCGGCGACGAT
GGAACAGCAGCAACACACCCAAGAGGGAGAAACAAGGGACAAAGATGGTG
GTGCTCCTCCACCTCCCTGCAATGGTAAAGAGAACAGCAGCAGCAGTAGC
AGCACTGACAGCGCTCCCCTCCTTCCTCCCGAACCTGGCTATGGGAATCA
GAGCCTGCTGTGGGTGGAGGGGCCAATGGACATTCCCTTTCGACGGCCCA
TTGGTCAAGTATTTACCTACTTCCCTCCCCCTTGCAGTAGTAGTAGTGGT
ACTGGTTCCAGAAATAGGAGTAGCAGGAGTGATGGTGAACAAAAGTACGA
GGGGAGAGGAGGAGGACATGTAGAGGGAGGAGGTCCTGAGCTGGTGGTTG
TGATAAGAGGGACATTATACAGTGAGGAATGGACGGCTAATTTTAGGTTG
CAGCGGGCAGATGAGGATGAGGTGGAGAAGTATGATTTTGAGGGTATTAT
GGTACCGAAGGGTTTTTTTGGGTTATTTACTGAAGTACTTCCGCAGGTAA
GGGAGGGAGGAAGAGAAAGTGAAATGGCTATTTTAAAAAATCGAAAAATC
CTTACTTTACCTAAATCTCTTCTGTCACCTTCACGATATAAATCTCACGA
CGATCTCTCTCCTTCTCTTCCTCCCCGTATTTCAGGTCAATGATGCCCTT
GTCCTCCACGGCAACAGCCACATCACTCGGCTGACACTCACCGGCCATTC
ACTGGGCGCCAGCATTGCGCTTCTCCTCGCGGCATATTTCGGTCAAAAAA
GACCCGACTTAAAAATATCCCTCATAACATTTGGTGGGCCCAACACCGTC
GATAACATATTGTTTGAAAACTACTGGAACCATCAAATAAATGTGCGCCA
AGTGTTTTATATCGGCTCGGGGCTCGTGCCTCGGGACGAGAGAGACAGAT
GGTTGGAGGGAGAGAGAGAAGAGAGACGGCAGCAGCAGCAGCAGTACGAG
TATCAGGATCGTGAACAACCTTCTGATTCCCACTTGAGCTTTGGGATCGG
GGACATGGTTGCACAGATGCCCCCAGACTGTACTGCTGTATCCCCCTGTC
CCTTGCTCCTCTTCCACGCCACCAATGGTCTGACGACCAATGATGACCGC
AGTACAAGTCCCAGTGGCTTCGATATTGAAAACAATTTCTTCACGCGTCT
CAGGCTGGCGCGTCCGCCGGGGTCGATTGTTTTTTATGCTTACGACTTAA
AGGGACGTGGCTCTGTGAGCACATGGTTGGCGTACGAAGACTTTTTGACG
CATGTCTGGACAAGATTAGATCGTGGTGTAATTTCAAGTCATGTTTGCGC
GTACGCGTGTTGGGTATCTTCGCTGGGAGGTGGAAAGAATGGCGAAGAAA
CGCGATGTTTTTTCCCGGAGGAAGGGGAGGGACGAGGCTTGGGGGAGATC
TGTGATTTACAATTGACGCGAGGTGAGCGTTTGGGAAAAACGCATCTTTA
ATTAGACCGAGAAAATAGGGGAGGAGGGAGTGTGAAATGTTGGAGAGCTT
GAAAAAATAAGGGCTCTAAATATTTTCAAGCAAGTCAATGAGAGGAGTAT
CATAAAATAAGTGGCATCCGGAGGTCTCGAG back to topCoding sequence (CDS) from alignment at chr27:241967..244647- >NO27G00650.1 ID=NO27G00650.1|Name=NO27G00650.1|organism=Nannochloropsis oceanica|type=CDS|length=2295bp|location=Sequence derived from alignment at chr27:241967..244647- (Nannochloropsis oceanica) ATGCCAGGTCGCCTGATTGTTTCAGTCTGCGGCATGCCCTTGTGTCGGGC GCGCCAGCCGCCGTGGCTGCGACAGCGGGCACCAGTTGTGGTTTTGCTTG TCCTGCTTTTCTGTTTGCTCAATCCCGTCGTCTCGTCATCACTGCGGGAA GGACGGCAGCAGCAGCAGCAGCAGCAGCAGTCGCAGGAGGTGGAGGAGAC AAGAATACGTGAAAATACCAAGCAGGAGCCGGCTGAGGCCATGGTAGAGA TCGATGCACTGGGCCAGCAGCAGCAGCAGCAGCAGCAGCACGAGCGAGAG GAGCAGTTCACAGCACAATCACCACCCAAGCCCCTCCAACGCGACCGAGA AGGCGCTGGCATTGCCCGCCTCCTACAAAGATGGCTAGACGAAGAGGATG GAGCAACGAGGCGAGATCTTCATGATAATGAGGAGGAGCATAAAGACAAG GACATAGAAAAAGAGGAGAATGATGCGTTAGCCTTAGCTGACCTAGGCAA CAGCACAGGCAACTTACAGGTATACAAAGCCCTTCGGGAAACTGCTGCGG CCCATAATATTACGGCCCGCGATTTTTGGACTTTGCAACGTTTGATTTTA ACACTGTCTTTTAATAGATATGGGAACAAGCCGACCATCTTCCCGATGTG TGAAATATATAAAATAGTGGGGCCTTTGCGGTTGCATTGTGTCTTCATTG TCTCGTCGTATCGGTTTTACACGGCGCAGCCGCCGTCGTTGAGGAAGGTG GCGACTGAACGCTCGTACAGTATTTATAGCGGAGGAGAGCAGGAGGAGAA GCAGCAGCAGGAGCAGGAGCCACCACACGTTTTACAAGACATTGGTGTGG TGCCTGAATTCATCGTTGACAAACCTTTAATTGAGAAGGAACGGCCTGTC TATCGATGGTGCTGGCGGCAGATTGTAAATATGTATGGCTTTACGTATCG GTGGAATGATGAAGGAGTAGAAGCGGCGACGATGGAACAGCAGCAACACA CCCAAGAGGGAGAAACAAGGGACAAAGATGGTGGTGCTCCTCCACCTCCC TGCAATGGTAAAGAGAACAGCAGCAGCAGTAGCAGCACTGACAGCGCTCC CCTCCTTCCTCCCGAACCTGGCTATGGGAATCAGAGCCTGCTGTGGGTGG AGGGGCCAATGGACATTCCCTTTCGACGGCCCATTGGTCAAGTATTTACC TACTTCCCTCCCCCTTGCAGTAGTAGTAGTGGTACTGGTTCCAGAAATAG GAGTAGCAGGAGTGATGGTGAACAAAAGTACGAGGGGAGAGGAGGAGGAC ATGTAGAGGGAGGAGGTCCTGAGCTGGTGGTTGTGATAAGAGGGACATTA TACAGTGAGGAATGGACGGCTAATTTTAGGTTGCAGCGGGCAGATGAGGA TGAGGTGGAGAAGTATGATTTTGAGGGTATTATGGTACCGAAGGGTTTTT TTGGGTTATTTACTGAAGTACTTCCGCAGGTCAATGATGCCCTTGTCCTC CACGGCAACAGCCACATCACTCGGCTGACACTCACCGGCCATTCACTGGG CGCCAGCATTGCGCTTCTCCTCGCGGCATATTTCGGTCAAAAAAGACCCG ACTTAAAAATATCCCTCATAACATTTGGTGGGCCCAACACCGTCGATAAC ATATTGTTTGAAAACTACTGGAACCATCAAATAAATGTGCGCCAAGTGTT TTATATCGGCTCGGGGCTCGTGCCTCGGGACGAGAGAGACAGATGGTTGG AGGGAGAGAGAGAAGAGAGACGGCAGCAGCAGCAGCAGTACGAGTATCAG GATCGTGAACAACCTTCTGATTCCCACTTGAGCTTTGGGATCGGGGACAT GGTTGCACAGATGCCCCCAGACTGTACTGCTGTATCCCCCTGTCCCTTGC TCCTCTTCCACGCCACCAATGGTCTGACGACCAATGATGACCGCAGTACA AGTCCCAGTGGCTTCGATATTGAAAACAATTTCTTCACGCGTCTCAGGCT GGCGCGTCCGCCGGGGTCGATTGTTTTTTATGCTTACGACTTAAAGGGAC GTGGCTCTGTGAGCACATGGTTGGCGTACGAAGACTTTTTGACGCATGTC TGGACAAGATTAGATCGTGGTGTAATTTCAAGTCATGTTTGCGCGTACGC GTGTTGGGTATCTTCGCTGGGAGGTGGAAAGAATGGCGAAGAAACGCGAT GTTTTTTCCCGGAGGAAGGGGAGGGACGAGGCTTGGGGGAGATCTGTGAT TTACAATTGACGCGAGGTGAGCGTTTGGGAAAAACGCATCTTTAA back to top
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