NO27G00540.1, NO27G00540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00540.1
Unique NameNO27G00540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length444
Alignment locationchr27:198341..198784 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:198341..198784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G00540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00540NO27G00540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00540.1NO27G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00540.1.cds1NO27G00540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00540.1 ID=NO27G00540.1|Name=NO27G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=444bp
ATGGGGAGAGAAGAACGAGCGCAGGGCAAGGGAGGGAAGGAGCGAGGGAG
GGAGGACGAGGGAGGGAAGGAGGGGGGCGATCTCGGTCGCGGTCGAGGGG
AAGAGAGAGGGACAGGGAGAGGGAAAAAGGAAGTGGGGGAGGAGGACGAG
AAAGGGAAGGGGGAAGGGAAGGAGAGAGGGGCGACAAACGGCAGCGGCGT
AACAGCCGCAGTCGAAGTCGGAGCCGAGAGCGAGGGACTGATAGGGGAGG
AGGAGGAAGGGAGGGAGGGAGGGATACTGGTAACCATGGGAGCCACCAAC
GCAGTAGTGGTGGAGGGGGAGGAGGAGGGAGGGATGGAGGGCGGTCCCGG
TCGAGGGAGAGGGACAGAGGGCATACAAATAATTGGGATGATCGACATCG
ACGGTGAGGAAGAAGAGGGAGGAAATGGGGAATGGAGAGGATGA
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protein sequence of NO27G00540.1

>NO27G00540.1-protein ID=NO27G00540.1-protein|Name=NO27G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MGREERAQGKGGKERGREDEGGKEGGDLGRGRGEERGTGRGKKEVGEEDE
KGKGEGKERGATNGSGVTAAVEVGAESEGLIGEEEEGREGGILVTMGATN
AVVVEGEEEGGMEGGPGRGRGTEGIQIIGMIDIDGEEEEGGNGEWRG*
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mRNA from alignment at chr27:198341..198784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00540.1 ID=NO27G00540.1|Name=NO27G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=444bp|location=Sequence derived from alignment at chr27:198341..198784- (Nannochloropsis oceanica)
ATGGGGAGAGAAGAACGAGCGCAGGGCAAGGGAGGGAAGGAGCGAGGGAG
GGAGGACGAGGGAGGGAAGGAGGGGGGCGATCTCGGTCGCGGTCGAGGGG
AAGAGAGAGGGACAGGGAGAGGGAAAAAGGAAGTGGGGGAGGAGGACGAG
AAAGGGAAGGGGGAAGGGAAGGAGAGAGGGGCGACAAACGGCAGCGGCGT
AACAGCCGCAGTCGAAGTCGGAGCCGAGAGCGAGGGACTGATAGGGGAGG
AGGAGGAAGGGAGGGAGGGAGGGATACTGGTAACCATGGGAGCCACCAAC
GCAGTAGTGGTGGAGGGGGAGGAGGAGGGAGGGATGGAGGGCGGTCCCGG
TCGAGGGAGAGGGACAGAGGGCATACAAATAATTGGGATGATCGACATCG
ACGGTGAGGAAGAAGAGGGAGGAAATGGGGAATGGAGAGGATGA
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Coding sequence (CDS) from alignment at chr27:198341..198784-

>NO27G00540.1 ID=NO27G00540.1|Name=NO27G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=444bp|location=Sequence derived from alignment at chr27:198341..198784- (Nannochloropsis oceanica)
ATGGGGAGAGAAGAACGAGCGCAGGGCAAGGGAGGGAAGGAGCGAGGGAG
GGAGGACGAGGGAGGGAAGGAGGGGGGCGATCTCGGTCGCGGTCGAGGGG
AAGAGAGAGGGACAGGGAGAGGGAAAAAGGAAGTGGGGGAGGAGGACGAG
AAAGGGAAGGGGGAAGGGAAGGAGAGAGGGGCGACAAACGGCAGCGGCGT
AACAGCCGCAGTCGAAGTCGGAGCCGAGAGCGAGGGACTGATAGGGGAGG
AGGAGGAAGGGAGGGAGGGAGGGATACTGGTAACCATGGGAGCCACCAAC
GCAGTAGTGGTGGAGGGGGAGGAGGAGGGAGGGATGGAGGGCGGTCCCGG
TCGAGGGAGAGGGACAGAGGGCATACAAATAATTGGGATGATCGACATCG
ACGGTGAGGAAGAAGAGGGAGGAAATGGGGAATGGAGAGGATGA
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Synonyms
Publications