NO27G00400.1, NO27G00400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00400.1
Unique NameNO27G00400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1965
Alignment locationchr27:147262..149755 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:147262..149755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO27G00400.1 vs.
Match: XP_005822759.1 (hypothetical protein GUITHDRAFT_79481 [Guillardia theta CCMP2712]; EKX35779.1 hypothetical protein GUITHDRAFT_79481 [Guillardia theta CCMP2712])

HSP 1 Score: 167.5 bits (423), Expect = 8.400e-38
Identity = 85/160 (53.12%), Postives = 104/160 (65.00%), Query Frame = 0 
Query:  222 TSGIRVNKCFASFASRREADRLVAAGRVKINGKVAEPGIRVNPGDTVTLDNKRVAWEAHVILPTSSTSPSSSSSSSSSSSSSPTKELIYIKYWKPRGVICTTDETIPDNIISTLDFPQRIFPVGRLDKESTGLILLTNDGRVPNAVLRSSLFHRKTYKVR 382
            + GIR+NKCF  FASRRE+DR V  GRV ++G+ A PG RV PG+ V LD K V WE   I+                 + +P  + +YIKYWKPRGV+CTTD  +  NI+  +  P+RIF VGRLDK+STGLILLT+DGRVPN VLRS   H K Y VR
Sbjct:   19 SEGIRINKCFKEFASRRESDRFVQDGRVTVDGRKAFPGERVFPGNVVRLDGKLVQWEGLSII---------------DETVAPQDQFVYIKYWKPRGVVCTTDTRVRGNIVDAVGHPERIFMVGRLDKDSTGLILLTSDGRVPNLVLRSDHKHDKKYMVR 163
The following BLAST results are available for this feature:
BLAST of NO27G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005822759.18.400e-3853.13hypothetical protein GUITHDRAFT_79481 [Guillardia ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00400NO27G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00400.1NO27G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00400.1.cds1NO27G00400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00400.1.cds2NO27G00400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00400.1.cds3NO27G00400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00400.1.cds4NO27G00400.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00400.1 ID=NO27G00400.1|Name=NO27G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp
CTGGCGAAAGTGCTAAAGTTCTATTGTATTGCGTTCGGGAAAAAAGACGG
ACCCGACCATGCATAACAAGCGCATCATTTCTTTTGTCTTTCACCTCTAC
GCAGCGTTAATGTTGTAACTGCAATCGATCAGGCACCCACCCGCAGCTAA
AGCGTGGGGCCTCAATGCCCCCACCTCGTTCCTGCATTGCTTGCTATTCA
TACGCTTGGTATGAGAGCTGTGTGGTGTGCGCTTGGCGTGGGATGGGGTG
CGTGAGTGTGCGTGCCTCCTGAGTCGTGCCACTTACGTGCCGCCCCGCAG
GCCAAGGAGTCTGACAAAAAACGCAGGCTCGTGGCGAGCGAGACAGTAGA
AAACTGCGCTCTACACGCAATAGACATGATTATGGGCGAGATGAAGGCAT
GTGTGGTCAAGCTATAGTATGCGTTAGGTACCAATTGATATATTTTGGGA
GAGGGAAAGAAGGGAGGGAAGAAAGGGACCGTCACTCCGGAACGAGGGAG
GTCGGCCCAAGTCGATTGTGCTGTGCAAGGCAAAGCAAAGCTTCCCAGAA
GGCTGTCAGTCGGGAGCAAAAATCTGGCGTATGCATATATTGCTTGCACG
TCAGACATATGAGGAACTCGTGTGTTCGGAAATTGTTTTTGGCCATTGGT
CTTCGGGTTTTGGCTTTCAGCCCCAGCAAGGAAGCAAGCGCTCTCCCTCT
CTCCCTCATCTCAACCCACTCCCACATACATTCACAGAGCAATGCCATCG
ACCACCCGAAGACAATAGCCCCAACGACAATAAGTGCACGGAACATCGAC
GCACTATAATGCCAGGGGCCTGCGCAAGGGGACCCTTTCTCCTGCGACTC
GTCACCGTCATCACCATGCTGCTACTTGCCGCAGCAACACGACGACCAGC
AGCAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGAAGGAGGTGCAG
GAGCAGCCTCCAGAACCACTGCCGCCATCACTGCTGCATTCCTTTGTATT
CCAAGTGGCAGCAGCCTCGTCAACGTATTCAGAAGACCATACAGTCGACA
TACTCTTTCCTCCCCTCTTCCCTCCGCTTTCCCCTCCGTTACCACCAGCC
TCGCTGCCGCAGCCGCTGGACGGGGACAGCCCAGCGACCCCAAGGACGAA
GATAATCGCCGTTGTCCTCCCCATCAAGGAGGAGCGGGAGCAGGAGGAGC
AGCAGGAGCACCAGCAGGAGGAGCAGGACAAAGAAATACGATGACAAGCG
GAATACGGGTCAATAAATGCTTTGCCTCCTTTGCGTCTCGACGTGAGGCG
GACCGTCTCGTGGCCGCAGGCCGCGTCAAGATCAATGGCAAGGTGGCCGA
GCCTGGAATCAGGGTTAATCCCGGAGACACCGTCACGCTCGACAACAAGC
GTGTCGCCTGGGAAGCCCATGTCATCCTTCCCACTTCCTCCACCTCCCCC
TCCTCGTCCTCGTCCTCGTCCTCGTCCTCGTCATCCTCTCCTACGAAAGA
GTTGATCTACATCAAGTACTGGAAGCCGCGGGGCGTGATCTGCACCACCG
ACGAGACCATCCCCGACAACATCATCTCCACGCTCGATTTCCCCCAACGG
ATCTTCCCCGTGGGTCGCCTCGACAAGGAGAGCACAGGACTTATTCTATT
GACAAACGACGGACGGGTGCCAAACGCCGTCCTCCGTTCTTCCCTCTTCC
ATCGTAAGACCTACAAGGTACGCACGTCCTGCGTATCGTACCCCCCCCTT
CCCTTCCTTCCCTCGCTTGCCTCCCTTCCCTTCCCTCCTTGCATGCGAGA
TGCATAGACTTTCCCCCTTTATCTCTGGGCAATGAACAGCCTAGCCTTGT
GGACTTGATCGGCGCCCTTCCCCCTCATTCCCTCCTTCCCCTTCCGTCGG
ACTTTGGGGAGGGGCGTCCCATGAGATCAGCACCCTTCCAACCCTTCCCG
CCCTCCCTCCTTCCC
back to top

protein sequence of NO27G00400.1

>NO27G00400.1-protein ID=NO27G00400.1-protein|Name=NO27G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MHILLARQTYEELVCSEIVFGHWSSGFGFQPQQGSKRSPSLPHLNPLPHT
FTEQCHRPPEDNSPNDNKCTEHRRTIMPGACARGPFLLRLVTVITMLLLA
AATRRPAAKAAAAAAAAAGEGGAGAASRTTAAITAAFLCIPSGSSLVNVF
RRPYSRHTLSSPLPSAFPSVTTSLAAAAAGRGQPSDPKDEDNRRCPPHQG
GAGAGGAAGAPAGGAGQRNTMTSGIRVNKCFASFASRREADRLVAAGRVK
INGKVAEPGIRVNPGDTVTLDNKRVAWEAHVILPTSSTSPSSSSSSSSSS
SSSPTKELIYIKYWKPRGVICTTDETIPDNIISTLDFPQRIFPVGRLDKE
STGLILLTNDGRVPNAVLRSSLFHRKTYKVRTSCVSYPPLPFLPSLASLP
FPPCMRDA*
back to top

mRNA from alignment at chr27:147262..149755+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00400.1 ID=NO27G00400.1|Name=NO27G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2494bp|location=Sequence derived from alignment at chr27:147262..149755+ (Nannochloropsis oceanica)
CTGGCGAAAGTGCTAAAGTTCTATTGTATTGCGTTCGGGAAAAAAGACGG
ACCCGACCATGCATAACAAGCGCATCATTTCTTTTGTCTTTCACCTCTAC
GCAGCGTTAATGTTGTAACTGCAATCGATCAGGCACCCACCCGCAGCTAA
AGCGTGGGGCCTCAATGCCCCCACCTCGTTCCTGCATTGCTTGCTATTCA
TACGCTTGGTATGAGAGCTGTGTGGTGTGCGCTTGGCGTGGGATGGGGTG
CGTGAGTGTGCGTGCCTCCTGAGTCGTGCCACTTACGTGCCGCCCCGCAG
GCCAAGGAGTCTGACAAAAAACGCAGGCTCGTGGCGAGCGAGACAGTAGA
AAACTGCGCTCTACACGCAATAGACATGATTATGGGCGAGATGAAGGCAT
GTGTGGTCAAGCTATAGTATGCGTTAGGTACCAATTGATATATTTTGGGA
GAGGGAAAGAAGGGAGGGAAGAAAGGGACCGTCACTCCGGAACGAGGGAG
GTCGGCCCAAGTCGATTGTGCTGTGCAAGGCAAAGCAAAGCTTCCCAGAA
GGCTGTCAGTCGGGAGCAAAAATCTGGCGTATGCATATATTGCTTGCACG
TCAGACATATGAGGAACTCGTGTGTTCGGAAATTGTTTTTGGCCATTGGT
CTTCGGGTTTTGGCTTTCAGCCCCAGCAAGGAAGCAAGCGCTCTCCCTCT
CTCCCTCATCTCAACCCACTCCCACATACATTCACAGAGCAATGCCATCG
ACCACCCGAAGACAATAGCCCCAACGACAATAAGTGCACGGAACATCGAC
GCACTATAATGCCAGGGGCCTGCGCAAGGGGACCCTTTCTCCTGCGACTC
GTCACCGTCATCACCATGCTGCTACTTGCCGCAGCAACACGACGACCAGC
AGCAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGAAGGAGGTGCAG
GAGCAGCCTCCAGAACCACTGCCGCCATCACTGCTGCATTCCTTTGTATT
CCAAGTGGCAGCAGCCTCGTCAACGTATTCAGAAGACCATACAGTCGGTA
TGTCGCAAGAGGTCGAGGGTATGTTCACTCTCCCTCCCTCCCTCCCTTCC
TCCCACCCTCCCCCCCTTCCCTCCCTCCCTCCCTCTCCCTCTCCCTTCGC
TTGTGTACACATGCTCACCTATCCGTACCGTATTCCTCCATAGACATACT
CTTTCCTCCCCTCTTCCCTCCGCTTTCCCCTCCGTTACCACCAGCCTCGC
TGCCGCAGCCGCTGGACGGGGACAGCCCAGCGACCCCAAGGACGAAGATA
ATCGCCGTTGTCCTCCCCATCAAGGAGGAGCGGGAGCAGGAGGAGCAGCA
GGAGCACCAGCAGGAGGAGCAGGACAAAGAAATACGATGACAAGCGGAAT
ACGGGTCAATAAATGCTTTGCCTCCTTTGCGTCTCGACGTGAGGCGGACC
GTCTCGTGGCCGCAGGCCGCGTCAAGATCAATGGCAAGGTACGTTTGCAT
TGCCCTCCCTCCCTCGCTCCTTCTCTCCCTTGAACCCCGCCTCCTTCCCT
CCCTCCTCCCCTACCTCTATCTGACCCCTCGCCATCCCTCTTTCGCTTCC
CTTTTCTCCACGCTCGACAGCCGATATCGAGCCATGAGGTCTCCCCCCAC
TACATCGGCACCTTTCTAACCCCCCCCTCCCGTCCTCCCTCCCACTCTCC
CTCCCCCCTCCCTCCCTCCCTTCAGGTGGCCGAGCCTGGAATCAGGGTTA
ATCCCGGAGACACCGTCACGCTCGACAACAAGCGTGTCGCCTGGGAAGCC
CATGTCATCCTTCCCACTTCCTCCACCTCCCCCTCCTCGTCCTCGTCCTC
GTCCTCGTCCTCGTCATCCTCTCCTACGAAAGAGTTGATCTACATCAAGT
ACTGGAAGCCGCGGTACGTCGTATTGGTCTCCAATCCCTCTCCTTCCCCT
CCCTCTCTCCCTCCATTCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCATC
GGCGTGCCGCCCGTCACCCACCTCCCGCCTCCTATCCCTCCCTCCCTCCC
TCCCCCCAGGGGCGTGATCTGCACCACCGACGAGACCATCCCCGACAACA
TCATCTCCACGCTCGATTTCCCCCAACGGATCTTCCCCGTGGGTCGCCTC
GACAAGGAGAGCACAGGACTTATTCTATTGACAAACGACGGACGGGTGCC
AAACGCCGTCCTCCGTTCTTCCCTCTTCCATCGTAAGACCTACAAGGTAC
GCACGTCCTGCGTATCGTACCCCCCCCTTCCCTTCCTTCCCTCGCTTGCC
TCCCTTCCCTTCCCTCCTTGCATGCGAGATGCATAGACTTTCCCCCTTTA
TCTCTGGGCAATGAACAGCCTAGCCTTGTGGACTTGATCGGCGCCCTTCC
CCCTCATTCCCTCCTTCCCCTTCCGTCGGACTTTGGGGAGGGGCGTCCCA
TGAGATCAGCACCCTTCCAACCCTTCCCGCCCTCCCTCCTTCCC
back to top

Coding sequence (CDS) from alignment at chr27:147262..149755+

>NO27G00400.1 ID=NO27G00400.1|Name=NO27G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr27:147262..149755+ (Nannochloropsis oceanica)
ATGCATATATTGCTTGCACGTCAGACATATGAGGAACTCGTGTGTTCGGA
AATTGTTTTTGGCCATTGGTCTTCGGGTTTTGGCTTTCAGCCCCAGCAAG
GAAGCAAGCGCTCTCCCTCTCTCCCTCATCTCAACCCACTCCCACATACA
TTCACAGAGCAATGCCATCGACCACCCGAAGACAATAGCCCCAACGACAA
TAAGTGCACGGAACATCGACGCACTATAATGCCAGGGGCCTGCGCAAGGG
GACCCTTTCTCCTGCGACTCGTCACCGTCATCACCATGCTGCTACTTGCC
GCAGCAACACGACGACCAGCAGCAAAAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGGAGAAGGAGGTGCAGGAGCAGCCTCCAGAACCACTGCCGCCATCA
CTGCTGCATTCCTTTGTATTCCAAGTGGCAGCAGCCTCGTCAACGTATTC
AGAAGACCATACAGTCGACATACTCTTTCCTCCCCTCTTCCCTCCGCTTT
CCCCTCCGTTACCACCAGCCTCGCTGCCGCAGCCGCTGGACGGGGACAGC
CCAGCGACCCCAAGGACGAAGATAATCGCCGTTGTCCTCCCCATCAAGGA
GGAGCGGGAGCAGGAGGAGCAGCAGGAGCACCAGCAGGAGGAGCAGGACA
AAGAAATACGATGACAAGCGGAATACGGGTCAATAAATGCTTTGCCTCCT
TTGCGTCTCGACGTGAGGCGGACCGTCTCGTGGCCGCAGGCCGCGTCAAG
ATCAATGGCAAGGTGGCCGAGCCTGGAATCAGGGTTAATCCCGGAGACAC
CGTCACGCTCGACAACAAGCGTGTCGCCTGGGAAGCCCATGTCATCCTTC
CCACTTCCTCCACCTCCCCCTCCTCGTCCTCGTCCTCGTCCTCGTCCTCG
TCATCCTCTCCTACGAAAGAGTTGATCTACATCAAGTACTGGAAGCCGCG
GGGCGTGATCTGCACCACCGACGAGACCATCCCCGACAACATCATCTCCA
CGCTCGATTTCCCCCAACGGATCTTCCCCGTGGGTCGCCTCGACAAGGAG
AGCACAGGACTTATTCTATTGACAAACGACGGACGGGTGCCAAACGCCGT
CCTCCGTTCTTCCCTCTTCCATCGTAAGACCTACAAGGTACGCACGTCCT
GCGTATCGTACCCCCCCCTTCCCTTCCTTCCCTCGCTTGCCTCCCTTCCC
TTCCCTCCTTGCATGCGAGATGCATAG
back to top
Synonyms
Publications