Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr27 genome chr27:147262..149755 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO27G00400.1 vs.
Match: XP_005822759.1 (hypothetical protein GUITHDRAFT_79481 [Guillardia theta CCMP2712]; EKX35779.1 hypothetical protein GUITHDRAFT_79481 [Guillardia theta CCMP2712])
HSP 1 Score: 167.5 bits (423), Expect = 8.400e-38
Identity = 85/160 (53.12%), Postives = 104/160 (65.00%), Query Frame = 0
Query: 222 TSGIRVNKCFASFASRREADRLVAAGRVKINGKVAEPGIRVNPGDTVTLDNKRVAWEAHVILPTSSTSPSSSSSSSSSSSSSPTKELIYIKYWKPRGVICTTDETIPDNIISTLDFPQRIFPVGRLDKESTGLILLTNDGRVPNAVLRSSLFHRKTYKVR 382
+ GIR+NKCF FASRRE+DR V GRV ++G+ A PG RV PG+ V LD K V WE I+ + +P + +YIKYWKPRGV+CTTD + NI+ + P+RIF VGRLDK+STGLILLT+DGRVPN VLRS H K Y VR
Sbjct: 19 SEGIRINKCFKEFASRRESDRFVQDGRVTVDGRKAFPGERVFPGNVVRLDGKLVQWEGLSII---------------DETVAPQDQFVYIKYWKPRGVVCTTDTRVRGNIVDAVGHPERIFMVGRLDKDSTGLILLTSDGRVPNLVLRSDHKHDKKYMVR 163
The following BLAST results are available for this feature:
BLAST of NO27G00400.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 Expect = 8.40e-38 / Id = 53.13 Sequence XP_005822759.1
Match Name E-value Identity Description
XP_005822759.1 8.400e-38 53.13 hypothetical protein GUITHDRAFT_79481 [Guillardia ... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO27G00400.1 ID=NO27G00400.1|Name=NO27G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp CTGGCGAAAGTGCTAAAGTTCTATTGTATTGCGTTCGGGAAAAAAGACGG ACCCGACCATGCATAACAAGCGCATCATTTCTTTTGTCTTTCACCTCTAC GCAGCGTTAATGTTGTAACTGCAATCGATCAGGCACCCACCCGCAGCTAA AGCGTGGGGCCTCAATGCCCCCACCTCGTTCCTGCATTGCTTGCTATTCA TACGCTTGGTATGAGAGCTGTGTGGTGTGCGCTTGGCGTGGGATGGGGTG CGTGAGTGTGCGTGCCTCCTGAGTCGTGCCACTTACGTGCCGCCCCGCAG GCCAAGGAGTCTGACAAAAAACGCAGGCTCGTGGCGAGCGAGACAGTAGA AAACTGCGCTCTACACGCAATAGACATGATTATGGGCGAGATGAAGGCAT GTGTGGTCAAGCTATAGTATGCGTTAGGTACCAATTGATATATTTTGGGA GAGGGAAAGAAGGGAGGGAAGAAAGGGACCGTCACTCCGGAACGAGGGAG GTCGGCCCAAGTCGATTGTGCTGTGCAAGGCAAAGCAAAGCTTCCCAGAA GGCTGTCAGTCGGGAGCAAAAATCTGGCGTATGCATATATTGCTTGCACG TCAGACATATGAGGAACTCGTGTGTTCGGAAATTGTTTTTGGCCATTGGT CTTCGGGTTTTGGCTTTCAGCCCCAGCAAGGAAGCAAGCGCTCTCCCTCT CTCCCTCATCTCAACCCACTCCCACATACATTCACAGAGCAATGCCATCG ACCACCCGAAGACAATAGCCCCAACGACAATAAGTGCACGGAACATCGAC GCACTATAATGCCAGGGGCCTGCGCAAGGGGACCCTTTCTCCTGCGACTC GTCACCGTCATCACCATGCTGCTACTTGCCGCAGCAACACGACGACCAGC AGCAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGAAGGAGGTGCAG GAGCAGCCTCCAGAACCACTGCCGCCATCACTGCTGCATTCCTTTGTATT CCAAGTGGCAGCAGCCTCGTCAACGTATTCAGAAGACCATACAGTCGACA TACTCTTTCCTCCCCTCTTCCCTCCGCTTTCCCCTCCGTTACCACCAGCC TCGCTGCCGCAGCCGCTGGACGGGGACAGCCCAGCGACCCCAAGGACGAA GATAATCGCCGTTGTCCTCCCCATCAAGGAGGAGCGGGAGCAGGAGGAGC AGCAGGAGCACCAGCAGGAGGAGCAGGACAAAGAAATACGATGACAAGCG GAATACGGGTCAATAAATGCTTTGCCTCCTTTGCGTCTCGACGTGAGGCG GACCGTCTCGTGGCCGCAGGCCGCGTCAAGATCAATGGCAAGGTGGCCGA GCCTGGAATCAGGGTTAATCCCGGAGACACCGTCACGCTCGACAACAAGC GTGTCGCCTGGGAAGCCCATGTCATCCTTCCCACTTCCTCCACCTCCCCC TCCTCGTCCTCGTCCTCGTCCTCGTCCTCGTCATCCTCTCCTACGAAAGA GTTGATCTACATCAAGTACTGGAAGCCGCGGGGCGTGATCTGCACCACCG ACGAGACCATCCCCGACAACATCATCTCCACGCTCGATTTCCCCCAACGG ATCTTCCCCGTGGGTCGCCTCGACAAGGAGAGCACAGGACTTATTCTATT GACAAACGACGGACGGGTGCCAAACGCCGTCCTCCGTTCTTCCCTCTTCC ATCGTAAGACCTACAAGGTACGCACGTCCTGCGTATCGTACCCCCCCCTT CCCTTCCTTCCCTCGCTTGCCTCCCTTCCCTTCCCTCCTTGCATGCGAGA TGCATAGACTTTCCCCCTTTATCTCTGGGCAATGAACAGCCTAGCCTTGT GGACTTGATCGGCGCCCTTCCCCCTCATTCCCTCCTTCCCCTTCCGTCGG ACTTTGGGGAGGGGCGTCCCATGAGATCAGCACCCTTCCAACCCTTCCCG CCCTCCCTCCTTCCC back to top protein sequence of NO27G00400.1
>NO27G00400.1-protein ID=NO27G00400.1-protein|Name=NO27G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp MHILLARQTYEELVCSEIVFGHWSSGFGFQPQQGSKRSPSLPHLNPLPHT FTEQCHRPPEDNSPNDNKCTEHRRTIMPGACARGPFLLRLVTVITMLLLA AATRRPAAKAAAAAAAAAGEGGAGAASRTTAAITAAFLCIPSGSSLVNVF RRPYSRHTLSSPLPSAFPSVTTSLAAAAAGRGQPSDPKDEDNRRCPPHQG GAGAGGAAGAPAGGAGQRNTMTSGIRVNKCFASFASRREADRLVAAGRVK INGKVAEPGIRVNPGDTVTLDNKRVAWEAHVILPTSSTSPSSSSSSSSSS SSSPTKELIYIKYWKPRGVICTTDETIPDNIISTLDFPQRIFPVGRLDKE STGLILLTNDGRVPNAVLRSSLFHRKTYKVRTSCVSYPPLPFLPSLASLP FPPCMRDA* back to top mRNA from alignment at chr27:147262..149755+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00400.1 ID=NO27G00400.1|Name=NO27G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2494bp|location=Sequence derived from alignment at chr27:147262..149755+ (Nannochloropsis oceanica) CTGGCGAAAGTGCTAAAGTTCTATTGTATTGCGTTCGGGAAAAAAGACGG
ACCCGACCATGCATAACAAGCGCATCATTTCTTTTGTCTTTCACCTCTAC
GCAGCGTTAATGTTGTAACTGCAATCGATCAGGCACCCACCCGCAGCTAA
AGCGTGGGGCCTCAATGCCCCCACCTCGTTCCTGCATTGCTTGCTATTCA
TACGCTTGGTATGAGAGCTGTGTGGTGTGCGCTTGGCGTGGGATGGGGTG
CGTGAGTGTGCGTGCCTCCTGAGTCGTGCCACTTACGTGCCGCCCCGCAG
GCCAAGGAGTCTGACAAAAAACGCAGGCTCGTGGCGAGCGAGACAGTAGA
AAACTGCGCTCTACACGCAATAGACATGATTATGGGCGAGATGAAGGCAT
GTGTGGTCAAGCTATAGTATGCGTTAGGTACCAATTGATATATTTTGGGA
GAGGGAAAGAAGGGAGGGAAGAAAGGGACCGTCACTCCGGAACGAGGGAG
GTCGGCCCAAGTCGATTGTGCTGTGCAAGGCAAAGCAAAGCTTCCCAGAA
GGCTGTCAGTCGGGAGCAAAAATCTGGCGTATGCATATATTGCTTGCACG
TCAGACATATGAGGAACTCGTGTGTTCGGAAATTGTTTTTGGCCATTGGT
CTTCGGGTTTTGGCTTTCAGCCCCAGCAAGGAAGCAAGCGCTCTCCCTCT
CTCCCTCATCTCAACCCACTCCCACATACATTCACAGAGCAATGCCATCG
ACCACCCGAAGACAATAGCCCCAACGACAATAAGTGCACGGAACATCGAC
GCACTATAATGCCAGGGGCCTGCGCAAGGGGACCCTTTCTCCTGCGACTC
GTCACCGTCATCACCATGCTGCTACTTGCCGCAGCAACACGACGACCAGC
AGCAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGAAGGAGGTGCAG
GAGCAGCCTCCAGAACCACTGCCGCCATCACTGCTGCATTCCTTTGTATT
CCAAGTGGCAGCAGCCTCGTCAACGTATTCAGAAGACCATACAGTCG GTA
TGTCGCAAGAGGTCGAGGGTATGTTCACTCTCCCTCCCTCCCTCCCTTCC
TCCCACCCTCCCCCCCTTCCCTCCCTCCCTCCCTCTCCCTCTCCCTTCGC
TTGTGTACACATGCTCACCTATCCGTACCGTATTCCTCCATAGACATACT
CTTTCCTCCCCTCTTCCCTCCGCTTTCCCCTCCGTTACCACCAGCCTCGC
TGCCGCAGCCGCTGGACGGGGACAGCCCAGCGACCCCAAGGACGAAGATA
ATCGCCGTTGTCCTCCCCATCAAGGAGGAGCGGGAGCAGGAGGAGCAGCA
GGAGCACCAGCAGGAGGAGCAGGACAAAGAAATACGATGACAAGCGGAAT
ACGGGTCAATAAATGCTTTGCCTCCTTTGCGTCTCGACGTGAGGCGGACC
GTCTCGTGGCCGCAGGCCGCGTCAAGATCAATGGCAAG GTACGTTTGCAT
TGCCCTCCCTCCCTCGCTCCTTCTCTCCCTTGAACCCCGCCTCCTTCCCT
CCCTCCTCCCCTACCTCTATCTGACCCCTCGCCATCCCTCTTTCGCTTCC
CTTTTCTCCACGCTCGACAGCCGATATCGAGCCATGAGGTCTCCCCCCAC
TACATCGGCACCTTTCTAACCCCCCCCTCCCGTCCTCCCTCCCACTCTCC
CTCCCCCCTCCCTCCCTCCCTTCAGGTGGCCGAGCCTGGAATCAGGGTTA
ATCCCGGAGACACCGTCACGCTCGACAACAAGCGTGTCGCCTGGGAAGCC
CATGTCATCCTTCCCACTTCCTCCACCTCCCCCTCCTCGTCCTCGTCCTC
GTCCTCGTCCTCGTCATCCTCTCCTACGAAAGAGTTGATCTACATCAAGT
ACTGGAAGCCGCG GTACGTCGTATTGGTCTCCAATCCCTCTCCTTCCCCT
CCCTCTCTCCCTCCATTCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCATC
GGCGTGCCGCCCGTCACCCACCTCCCGCCTCCTATCCCTCCCTCCCTCCC
TCCCCCCAGGGGCGTGATCTGCACCACCGACGAGACCATCCCCGACAACA
TCATCTCCACGCTCGATTTCCCCCAACGGATCTTCCCCGTGGGTCGCCTC
GACAAGGAGAGCACAGGACTTATTCTATTGACAAACGACGGACGGGTGCC
AAACGCCGTCCTCCGTTCTTCCCTCTTCCATCGTAAGACCTACAAGGTAC
GCACGTCCTGCGTATCGTACCCCCCCCTTCCCTTCCTTCCCTCGCTTGCC
TCCCTTCCCTTCCCTCCTTGCATGCGAGATGCATAG ACTTTCCCCCTTTA
TCTCTGGGCAATGAACAGCCTAGCCTTGTGGACTTGATCGGCGCCCTTCC
CCCTCATTCCCTCCTTCCCCTTCCGTCGGACTTTGGGGAGGGGCGTCCCA
TGAGATCAGCACCCTTCCAACCCTTCCCGCCCTCCCTCCTTCCC back to top Coding sequence (CDS) from alignment at chr27:147262..149755+
>NO27G00400.1 ID=NO27G00400.1|Name=NO27G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr27:147262..149755+ (Nannochloropsis oceanica) ATGCATATATTGCTTGCACGTCAGACATATGAGGAACTCGTGTGTTCGGA AATTGTTTTTGGCCATTGGTCTTCGGGTTTTGGCTTTCAGCCCCAGCAAG GAAGCAAGCGCTCTCCCTCTCTCCCTCATCTCAACCCACTCCCACATACA TTCACAGAGCAATGCCATCGACCACCCGAAGACAATAGCCCCAACGACAA TAAGTGCACGGAACATCGACGCACTATAATGCCAGGGGCCTGCGCAAGGG GACCCTTTCTCCTGCGACTCGTCACCGTCATCACCATGCTGCTACTTGCC GCAGCAACACGACGACCAGCAGCAAAAGCAGCAGCAGCAGCAGCAGCAGC AGCAGGAGAAGGAGGTGCAGGAGCAGCCTCCAGAACCACTGCCGCCATCA CTGCTGCATTCCTTTGTATTCCAAGTGGCAGCAGCCTCGTCAACGTATTC AGAAGACCATACAGTCGACATACTCTTTCCTCCCCTCTTCCCTCCGCTTT CCCCTCCGTTACCACCAGCCTCGCTGCCGCAGCCGCTGGACGGGGACAGC CCAGCGACCCCAAGGACGAAGATAATCGCCGTTGTCCTCCCCATCAAGGA GGAGCGGGAGCAGGAGGAGCAGCAGGAGCACCAGCAGGAGGAGCAGGACA AAGAAATACGATGACAAGCGGAATACGGGTCAATAAATGCTTTGCCTCCT TTGCGTCTCGACGTGAGGCGGACCGTCTCGTGGCCGCAGGCCGCGTCAAG ATCAATGGCAAGGTGGCCGAGCCTGGAATCAGGGTTAATCCCGGAGACAC CGTCACGCTCGACAACAAGCGTGTCGCCTGGGAAGCCCATGTCATCCTTC CCACTTCCTCCACCTCCCCCTCCTCGTCCTCGTCCTCGTCCTCGTCCTCG TCATCCTCTCCTACGAAAGAGTTGATCTACATCAAGTACTGGAAGCCGCG GGGCGTGATCTGCACCACCGACGAGACCATCCCCGACAACATCATCTCCA CGCTCGATTTCCCCCAACGGATCTTCCCCGTGGGTCGCCTCGACAAGGAG AGCACAGGACTTATTCTATTGACAAACGACGGACGGGTGCCAAACGCCGT CCTCCGTTCTTCCCTCTTCCATCGTAAGACCTACAAGGTACGCACGTCCT GCGTATCGTACCCCCCCCTTCCCTTCCTTCCCTCGCTTGCCTCCCTTCCC TTCCCTCCTTGCATGCGAGATGCATAG back to top