NO27G00300.4, NO27G00300.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00300.4
Unique NameNO27G00300.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2238
Alignment locationchr27:107508..110404 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:107508..110404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO27G00300.4 vs.
Match: EWM21069.1 (alpha beta hydrolase fold protein [Nannochloropsis gaditana])

HSP 1 Score: 377.1 bits (967), Expect = 5.100e-101
Identity = 193/291 (66.32%), Postives = 221/291 (75.95%), Query Frame = 0 
Query:    1 MRQLQQQPPSKAWKG---LLFLIIMASTIITHAFLL--PHSTTPSTHRSAPLL--VPGLVESPPPLSFCLLSAPFPSPRVLPPRHASTLEAPPSSSPPPTRRPPKRNFEAWTWKGHRINYRVEGDETDPPILLIHGFGASVSHFRNQFKDLPPLGYRVFAVDLLGFGGSDKVKEGVEYELELWRDLLVDFMEEMERRGSASSSLGWTVGGNSIGGLLTMMVAIAQGKEKVKGCVLFNAAGGLTSFRDEELPWVLRPLWVFVRVVLFGDIFGPGLFKRFATEENVRSVLSQV 285
            MR        + W G   L FL ++    ++ AF    P S  PS+   A  +   P  +E  P  ++C    PF       P  A T+EAPPS  P P+RRPP+R FEAWTW+GHRINYRVEGD   PPILLIHGFGASV HFRNQF+DLPPLGYRVFAVDLLGFGGSDKVK GV+YELELWRDLLVDFM+EME RG+AS++ GWTVGGNSIGGLLT+MVA+A+G E VKGCVLFN AGGLTSFR+EELPW+LRPLW+FVRVVLFGDIFGPGLF+RF TEENVRSVL+QV
Sbjct:    1 MRSTADGIRKRRWPGEHRLFFLTLVNILTMSRAFYFARPQSWCPSSTGPASNIQRAPFFLELRPSSAWCDPFLPFARGG---PSRAGTVEAPPSPPPQPSRRPPRRTFEAWTWRGHRINYRVEGDAEAPPILLIHGFGASVGHFRNQFRDLPPLGYRVFAVDLLGFGGSDKVKAGVDYELELWRDLLVDFMQEMEARGTASTTHGWTVGGNSIGGLLTLMVAVARGAETVKGCVLFNCAGGLTSFREEELPWILRPLWIFVRVVLFGDIFGPGLFQRFRTEENVRSVLAQV 288
The following BLAST results are available for this feature:
BLAST of NO27G00300.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21069.15.100e-10166.32alpha beta hydrolase fold protein [Nannochloropsis... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00300NO27G00300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00300.4NO27G00300.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00300.4.cds1NO27G00300.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00300.4.cds2NO27G00300.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00300.4.cds3NO27G00300.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00300.4.cds4NO27G00300.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00300.4.cds5NO27G00300.4.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00300.4 ID=NO27G00300.4|Name=NO27G00300.4|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp
ACACGACAGACACTAGGCATCTCTTAGAAAATGCGGCAGCTGCAGCAGCA
GCCGCCGTCAAAGGCATGGAAAGGCCTTCTATTCCTCATCATCATGGCCA
GCACAATTATTACGCATGCCTTCCTCCTCCCACACTCCACGACGCCTTCC
ACGCATCGATCGGCTCCTCTATTGGTCCCTGGCTTGGTTGAATCCCCTCC
TCCTCTTTCTTTCTGTCTCCTAAGTGCCCCTTTCCCAAGCCCTCGTGTCC
TTCCTCCTCGACATGCCAGCACGCTTGAAGCACCCCCATCTTCTTCCCCT
CCTCCAACACGTCGGCCTCCCAAACGCAATTTTGAGGCATGGACGTGGAA
AGGGCACCGTATCAACTATCGGGTGGAAGGCGATGAGACGGACCCGCCCA
TCCTCCTCATTCACGGTTTTGGCGCGAGCGTCAGCCATTTCCGAAATCAG
TTTAAAGACCTCCCACCTCTAGGATATCGCGTGTTTGCCGTCGATCTCCT
CGGTTTTGGAGGAAGCGATAAAGTGAAGGAAGGCGTAGAGTACGAGCTGG
AGCTCTGGAGGGACTTACTTGTGGATTTCATGGAGGAAATGGAACGGCGC
GGCTCGGCCTCATCTTCGCTTGGATGGACCGTAGGCGGTAACAGCATCGG
TGGCCTGCTTACAATGATGGTGGCTATTGCCCAAGGCAAAGAAAAGGTAA
AGGGTTGTGTACTCTTTAACGCTGCCGGAGGATTGACCAGTTTTAGAGAC
GAGGAGCTGCCGTGGGTATTAAGGCCGCTGTGGGTATTTGTGCGGGTGGT
CCTATTTGGCGATATTTTTGGACCTGGCTTGTTCAAGCGCTTCGCAACGG
AAGAGAATGTACGCTCGGTGCTGAGTCAGGTAACAATCAAAGAACGGAAA
AGGGGTAAAAAGGGAATGGGATTGTAGGAGAAGGTAAAGGATAAAAGAGA
TGCAGCATGCGCATGCGCGCATTCTTTGGTCGCATGGTGATTGAGTACCT
TGTGTCAGAATCTTGGATGATCCATTAGGCATAGTGTGTGAGCAAATGTA
CACCAGAAAACAAAGCCTTTTTCTTCTCCTTTTCACCCTCTATTTCGCGC
ATTTTTCCAACCCTATCTCAGGTCTATGGCAACAAAACTGCAGTCGACGA
CGAGCTTGTGGACATCCTGCTTACTCCCGGGGGAGATGATGGCGCGGAAG
AAGTTTTTCTCAAGGTGCTGAGGGCGCCGGCAGGTCCCTCTCCTAAGCAG
CTCTTGCCACGGATTCAGGTCCCAATTATTGGAATCTGGGGGGTAAGTAG
GTGTCGAGGGAGGGCGAGGAGAAAGGTTGGTGGGAAGAAAGGAGGATGAG
AGAGATGGGAAGAGCAAGCTCACAAGATGATGCTGAACGTGGTTGACCTG
ACGGAGAGGAACAATATCACAGACCTGACTTAGGAGAGCCATCGCATTGA
CTTGATGTAGGATGTGTAGACAATTTCCTAACGGATGGAGGAACATCTGG
TCACTTTTTTTTAAGGGATCATTTTGAGCATGGTCGCCAAGCACTTTGCA
GGGGTGGATGCATGCAATCATCTCATTCACCGCAATATCCTCCGTTAGGT
CGATAACGACCGTGTCGTCAGTCAAGTCTATGAGCTGCATTGTGGGCGAC
CATGCTACATGTTGTCCATTTCTAATATTACGACTCCTAACACACTCTTA
ATATTTCCTTGACAGGAGGATGACCCTTGGACACCCATAAACACAGGTAA
GTCGCACAAGCGCGCCTCCATCTTTCATCACCTCCGTGCCTGGTTCCTTT
AAAATACCTTCTCCTCTGCCCTTCCACCCTCCTCCTTTCGTTTTCCCCTT
CCCTTCCTCCATCAGGCATGCACCCCGGCATCAAGTTCTCGCAATATCAA
CCCGCTTTCCGCCTCTTCCCGCTGCCCAAGACTGGCCACTGTCCACATGA
CGAGCGACCGGCTGAATGCCTCGCGATAATGAAACCTTTTCTAGAAGAAG
TTTACTCTGTGGACCAAGAAAGAAAGTAGACAAGAAGGTGTTGGGAAAAT
GAGGGTGGGTTATTAAATGTACAGATAGGTAATTGACAAAATTAATGATA
TCCATTGAGACATAGGCGTAAACAAGCAACGTCTATGCGAGGCTTGATCA
TGAGAAGAAAAGAGAAAGAAAGGAGAAGAAAGGAAGACTCAACAAATAAA
CAAACGAACGAAGAACGAAAACTTCGAGGAACAGAAGA
back to top

protein sequence of NO27G00300.4

>NO27G00300.4-protein ID=NO27G00300.4-protein|Name=NO27G00300.4|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MRQLQQQPPSKAWKGLLFLIIMASTIITHAFLLPHSTTPSTHRSAPLLVP
GLVESPPPLSFCLLSAPFPSPRVLPPRHASTLEAPPSSSPPPTRRPPKRN
FEAWTWKGHRINYRVEGDETDPPILLIHGFGASVSHFRNQFKDLPPLGYR
VFAVDLLGFGGSDKVKEGVEYELELWRDLLVDFMEEMERRGSASSSLGWT
VGGNSIGGLLTMMVAIAQGKEKVKGCVLFNAAGGLTSFRDEELPWVLRPL
WVFVRVVLFGDIFGPGLFKRFATEENVRSVLSQVTIKERKRGKKGMGL*
back to top

mRNA from alignment at chr27:107508..110404+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00300.4 ID=NO27G00300.4|Name=NO27G00300.4|organism=Nannochloropsis oceanica|type=mRNA|length=2897bp|location=Sequence derived from alignment at chr27:107508..110404+ (Nannochloropsis oceanica)
ACACGACAGACACTAGGCATCTCTTAGAAAATGCGGCAGCTGCAGCAGCA
GCCGCCGTCAAAGGCATGGAAAGGCCTTCTATTCCTCATCATCATGGCCA
GCACAATTATTACGCATGCCTTCCTCCTCCCACACTCCACGACGCCTTCC
ACGCATCGATCGGCTCCTCTATTGGTCCCTGGCTTGGTTGAATCCCCTCC
TCCTCTTTCTTTCTGTCTCCTAAGTGCCCCTTTCCCAAGCCCTCGTGTCC
TTCCTCCTCGACATGCCAGCACGCTTGAAGCACCCCCATCTTCTTCCCCT
CCTCCAACACGTCGGCCTCCCAAACGCAATTTTGAGGCATGGACGTGGAA
AGGGCACCGTATCAACTATCGGGTGGAAGGCGATGAGACGGTAGGGGTGT
GGAAGGGATGAAGATCGGGGCTTGGTGGAGGGAACTTCCGGGGAAAGGGA
GGAGAAGAAGATGGAGAGCATTGTCCGTGATTTTGCTTTTGGCGTCGCCG
CCAACAGCCTAATCAAGGATTACCTTTTCAACGAATTTTTGTTTCCCCTT
TAAACCTCATCGCCGTGTTCCTTCATCCTTTTCCTTTCCTTCCTTTCACA
GGACCCGCCCATCCTCCTCATTCACGGTAAGTCGCAAGGACGAAAGAAAG
CCGAGAAATGAAGGCTTAAAAAATGAGTGATGGGAAAGGGAAACTTACTA
CAGCTAACGATACTGATTGTGCAATGCTCACATCATTATCCTCTTCACTC
CATATTGTTATCAGGTTTTGGCGCGAGCGTCAGCCATTTCCGAAATCAGT
TTAAAGACCTCCCACCTCTAGGCAAGTTCCCAGAGTCTTGGAAACAAATC
ATGGAAGTGATGATAAATTAGAAGCTTGTAAACAGATATCTGTCTGTTTG
GGATATCCAAAGCGTCAAGAAATCGGACATTGCTGCACCTCTTTGTTTTT
TCGTTAATTGATAAATGCGCGATACTTCTCTCCCCTCTTGCATACGTCCA
TCCCTTCCCTTTTAGGATATCGCGTGTTTGCCGTCGATCTCCTCGGTTTT
GGAGGAAGCGATAAAGTGAAGGAAGGCGTAGAGTACGAGCTGGAGCTCTG
GAGGGACTTACTTGTGGATTTCATGGAGGTACGCATAGGCGTGATAAACA
TAATTAAACGAAATTTGCTGTACAGGTGAGTCATGCTCGACTCATTCTTA
CATGCTTCCTCACGCCCTCCTCGTCTGCTTTCCATTTGTCATAGGAAATG
GAACGGCGCGGCTCGGCCTCATCTTCGCTTGGATGGACCGTAGGCGGTAA
CAGCATCGGTGGCCTGCTTACAATGATGGTGGCTATTGCCCAAGGCAAAG
AAAAGGTAAAGGGTTGTGTACTCTTTAACGCTGCCGGAGGATTGACCAGT
TTTAGAGACGAGGAGCTGCCGTGGGTATTAAGGCCGCTGTGGGTATTTGT
GCGGGTGGTCCTATTTGGCGATATTTTTGGACCTGGCTTGTTCAAGCGCT
TCGCAACGGAAGAGAATGTACGCTCGGTGCTGAGTCAGGTAACAATCAAA
GAACGGAAAAGGGGTAAAAAGGGAATGGGATTGTAGGAGAAGGTAAAGGA
TAAAAGAGATGCAGCATGCGCATGCGCGCATTCTTTGGTCGCATGGTGAT
TGAGTACCTTGTGTCAGAATCTTGGATGATCCATTAGGCATAGTGTGTGA
GCAAATGTACACCAGAAAACAAAGCCTTTTTCTTCTCCTTTTCACCCTCT
ATTTCGCGCATTTTTCCAACCCTATCTCAGGTCTATGGCAACAAAACTGC
AGTCGACGACGAGCTTGTGGACATCCTGCTTACTCCCGGGGGAGATGATG
GCGCGGAAGAAGTTTTTCTCAAGGTGCTGAGGGCGCCGGCAGGTCCCTCT
CCTAAGCAGCTCTTGCCACGGATTCAGGTCCCAATTATTGGAATCTGGGG
GGTAAGTAGGTGTCGAGGGAGGGCGAGGAGAAAGGTTGGTGGGAAGAAAG
GAGGATGAGAGAGATGGGAAGAGCAAGCTCACAAGATGATGCTGAACGTG
GTTGACCTGACGGAGAGGAACAATATCACAGACCTGACTTAGGAGAGCCA
TCGCATTGACTTGATGTAGGATGTGTAGACAATTTCCTAACGGATGGAGG
AACATCTGGTCACTTTTTTTTAAGGGATCATTTTGAGCATGGTCGCCAAG
CACTTTGCAGGGGTGGATGCATGCAATCATCTCATTCACCGCAATATCCT
CCGTTAGGTCGATAACGACCGTGTCGTCAGTCAAGTCTATGAGCTGCATT
GTGGGCGACCATGCTACATGTTGTCCATTTCTAATATTACGACTCCTAAC
ACACTCTTAATATTTCCTTGACAGGAGGATGACCCTTGGACACCCATAAA
CACAGGTAAGTCGCACAAGCGCGCCTCCATCTTTCATCACCTCCGTGCCT
GGTTCCTTTAAAATACCTTCTCCTCTGCCCTTCCACCCTCCTCCTTTCGT
TTTCCCCTTCCCTTCCTCCATCAGGCATGCACCCCGGCATCAAGTTCTCG
CAATATCAACCCGCTTTCCGCCTCTTCCCGCTGCCCAAGACTGGCCACTG
TCCACATGACGAGCGACCGGCTGAATGCCTCGCGATAATGAAACCTTTTC
TAGAAGAAGTTTACTCTGTGGACCAAGAAAGAAAGTAGACAAGAAGGTGT
TGGGAAAATGAGGGTGGGTTATTAAATGTACAGATAGGTAATTGACAAAA
TTAATGATATCCATTGAGACATAGGCGTAAACAAGCAACGTCTATGCGAG
GCTTGATCATGAGAAGAAAAGAGAAAGAAAGGAGAAGAAAGGAAGACTCA
ACAAATAAACAAACGAACGAAGAACGAAAACTTCGAGGAACAGAAGA
back to top

Coding sequence (CDS) from alignment at chr27:107508..110404+

>NO27G00300.4 ID=NO27G00300.4|Name=NO27G00300.4|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr27:107508..110404+ (Nannochloropsis oceanica)
ATGCGGCAGCTGCAGCAGCAGCCGCCGTCAAAGGCATGGAAAGGCCTTCT
ATTCCTCATCATCATGGCCAGCACAATTATTACGCATGCCTTCCTCCTCC
CACACTCCACGACGCCTTCCACGCATCGATCGGCTCCTCTATTGGTCCCT
GGCTTGGTTGAATCCCCTCCTCCTCTTTCTTTCTGTCTCCTAAGTGCCCC
TTTCCCAAGCCCTCGTGTCCTTCCTCCTCGACATGCCAGCACGCTTGAAG
CACCCCCATCTTCTTCCCCTCCTCCAACACGTCGGCCTCCCAAACGCAAT
TTTGAGGCATGGACGTGGAAAGGGCACCGTATCAACTATCGGGTGGAAGG
CGATGAGACGGACCCGCCCATCCTCCTCATTCACGGTTTTGGCGCGAGCG
TCAGCCATTTCCGAAATCAGTTTAAAGACCTCCCACCTCTAGGATATCGC
GTGTTTGCCGTCGATCTCCTCGGTTTTGGAGGAAGCGATAAAGTGAAGGA
AGGCGTAGAGTACGAGCTGGAGCTCTGGAGGGACTTACTTGTGGATTTCA
TGGAGGAAATGGAACGGCGCGGCTCGGCCTCATCTTCGCTTGGATGGACC
GTAGGCGGTAACAGCATCGGTGGCCTGCTTACAATGATGGTGGCTATTGC
CCAAGGCAAAGAAAAGGTAAAGGGTTGTGTACTCTTTAACGCTGCCGGAG
GATTGACCAGTTTTAGAGACGAGGAGCTGCCGTGGGTATTAAGGCCGCTG
TGGGTATTTGTGCGGGTGGTCCTATTTGGCGATATTTTTGGACCTGGCTT
GTTCAAGCGCTTCGCAACGGAAGAGAATGTACGCTCGGTGCTGAGTCAGG
TAACAATCAAAGAACGGAAAAGGGGTAAAAAGGGAATGGGATTGTAG
back to top
Synonyms
Publications