NO27G00300.1, NO27G00300.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G00300.1
Unique Name	NO27G00300.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1454
Alignment location	chr27:107508..110404 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:107508..110404 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO27G00300.1 vs.
Match: EWM21069.1 (alpha beta hydrolase fold protein [Nannochloropsis gaditana])

HSP 1 Score: 498.8 bits (1283), Expect = 1.600e-137
Identity = 250/358 (69.83%), Postives = 285/358 (79.61%), Query Frame = 0

Query:    1 MRQLQQQPPSKAWKG---LLFLIIMASTIITHAFLL--PHSTTPSTHRSAPLL--VPGLVESPPPLSFCLLSAPFPSPRVLPPRHASTLEAPPSSSPPPTRRPPKRNFEAWTWKGHRINYRVEGDETDPPILLIHGFGASVSHFRNQFKDLPPLGYRVFAVDLLGFGGSDKVKEGVEYELELWRDLLVDFMEEMERRGSASSSLGWTVGGNSIGGLLTMMVAIAQGKEKVKGCVLFNAAGGLTSFRDEELPWVLRPLWVFVRVVLFGDIFGPGLFKRFATEENVRSVLSQVYGNKTAVDDELVDILLTPGGDDGAEEVFLKVLRAPAGPSPKQLLPRIQVPIIGIWGEDDPWTPINTG 352
            MR        + W G   L FL ++    ++ AF    P S  PS+   A  +   P  +E  P  ++C    PF       P  A T+EAPPS  P P+RRPP+R FEAWTW+GHRINYRVEGD   PPILLIHGFGASV HFRNQF+DLPPLGYRVFAVDLLGFGGSDKVK GV+YELELWRDLLVDFM+EME RG+AS++ GWTVGGNSIGGLLT+MVA+A+G E VKGCVLFN AGGLTSFR+EELPW+LRPLW+FVRVVLFGDIFGPGLF+RF TEENVRSVL+QVYGN+TAVDDELVD+LLTPG DDGAEEVFLKVLRAPAGPSP++LLP+IQVP+IGIWGE DPWTP+ TG
Sbjct:    1 MRSTADGIRKRRWPGEHRLFFLTLVNILTMSRAFYFARPQSWCPSSTGPASNIQRAPFFLELRPSSAWCDPFLPFARGG---PSRAGTVEAPPSPPPQPSRRPPRRTFEAWTWRGHRINYRVEGDAEAPPILLIHGFGASVGHFRNQFRDLPPLGYRVFAVDLLGFGGSDKVKAGVDYELELWRDLLVDFMQEMEARGTASTTHGWTVGGNSIGGLLTLMVAVARGAETVKGCVLFNCAGGLTSFREEELPWILRPLWIFVRVVLFGDIFGPGLFQRFRTEENVRSVLAQVYGNETAVDDELVDVLLTPGLDDGAEEVFLKVLRAPAGPSPEELLPQIQVPVIGIWGEKDPWTPLATG 355

The following BLAST results are available for this feature:

BLAST of NO27G00300.1 vs.

BLAST of NO27G00300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21069.1	1.600e-137	69.83	alpha beta hydrolase fold protein [Nannochloropsis...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G00300	NO27G00300	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00300.1	NO27G00300.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00300.1.cds1	NO27G00300.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00300.1.cds2	NO27G00300.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00300.1.cds3	NO27G00300.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00300.1.cds4	NO27G00300.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00300.1.cds5	NO27G00300.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00300.1.cds6	NO27G00300.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00300.1.cds7	NO27G00300.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00300.1.cds8	NO27G00300.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:107508..110404+
coding sequence from alignment at chr27:107508..110404+

mRNA sequence

>NO27G00300.1 ID=NO27G00300.1|Name=NO27G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp
ACACGACAGACACTAGGCATCTCTTAGAAAATGCGGCAGCTGCAGCAGCA
GCCGCCGTCAAAGGCATGGAAAGGCCTTCTATTCCTCATCATCATGGCCA
GCACAATTATTACGCATGCCTTCCTCCTCCCACACTCCACGACGCCTTCC
ACGCATCGATCGGCTCCTCTATTGGTCCCTGGCTTGGTTGAATCCCCTCC
TCCTCTTTCTTTCTGTCTCCTAAGTGCCCCTTTCCCAAGCCCTCGTGTCC
TTCCTCCTCGACATGCCAGCACGCTTGAAGCACCCCCATCTTCTTCCCCT
CCTCCAACACGTCGGCCTCCCAAACGCAATTTTGAGGCATGGACGTGGAA
AGGGCACCGTATCAACTATCGGGTGGAAGGCGATGAGACGGACCCGCCCA
TCCTCCTCATTCACGGTTTTGGCGCGAGCGTCAGCCATTTCCGAAATCAG
TTTAAAGACCTCCCACCTCTAGGATATCGCGTGTTTGCCGTCGATCTCCT
CGGTTTTGGAGGAAGCGATAAAGTGAAGGAAGGCGTAGAGTACGAGCTGG
AGCTCTGGAGGGACTTACTTGTGGATTTCATGGAGGAAATGGAACGGCGC
GGCTCGGCCTCATCTTCGCTTGGATGGACCGTAGGCGGTAACAGCATCGG
TGGCCTGCTTACAATGATGGTGGCTATTGCCCAAGGCAAAGAAAAGGTAA
AGGGTTGTGTACTCTTTAACGCTGCCGGAGGATTGACCAGTTTTAGAGAC
GAGGAGCTGCCGTGGGTATTAAGGCCGCTGTGGGTATTTGTGCGGGTGGT
CCTATTTGGCGATATTTTTGGACCTGGCTTGTTCAAGCGCTTCGCAACGG
AAGAGAATGTACGCTCGGTGCTGAGTCAGGTCTATGGCAACAAAACTGCA
GTCGACGACGAGCTTGTGGACATCCTGCTTACTCCCGGGGGAGATGATGG
CGCGGAAGAAGTTTTTCTCAAGGTGCTGAGGGCGCCGGCAGGTCCCTCTC
CTAAGCAGCTCTTGCCACGGATTCAGGTCCCAATTATTGGAATCTGGGGG
GAGGATGACCCTTGGACACCCATAAACACAGGCATGCACCCCGGCATCAA
GTTCTCGCAATATCAACCCGCTTTCCGCCTCTTCCCGCTGCCCAAGACTG
GCCACTGTCCACATGACGAGCGACCGGCTGAATGCCTCGCGATAATGAAA
CCTTTTCTAGAAGAAGTTTACTCTGTGGACCAAGAAAGAAAGTAGACAAG
AAGGTGTTGGGAAAATGAGGGTGGGTTATTAAATGTACAGATAGGTAATT
GACAAAATTAATGATATCCATTGAGACATAGGCGTAAACAAGCAACGTCT
ATGCGAGGCTTGATCATGAGAAGAAAAGAGAAAGAAAGGAGAAGAAAGGA
AGACTCAACAAATAAACAAACGAACGAAGAACGAAAACTTCGAGGAACAG
AAGA

protein sequence of NO27G00300.1

>NO27G00300.1-protein ID=NO27G00300.1-protein|Name=NO27G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MRQLQQQPPSKAWKGLLFLIIMASTIITHAFLLPHSTTPSTHRSAPLLVP
GLVESPPPLSFCLLSAPFPSPRVLPPRHASTLEAPPSSSPPPTRRPPKRN
FEAWTWKGHRINYRVEGDETDPPILLIHGFGASVSHFRNQFKDLPPLGYR
VFAVDLLGFGGSDKVKEGVEYELELWRDLLVDFMEEMERRGSASSSLGWT
VGGNSIGGLLTMMVAIAQGKEKVKGCVLFNAAGGLTSFRDEELPWVLRPL
WVFVRVVLFGDIFGPGLFKRFATEENVRSVLSQVYGNKTAVDDELVDILL
TPGGDDGAEEVFLKVLRAPAGPSPKQLLPRIQVPIIGIWGEDDPWTPINT
GMHPGIKFSQYQPAFRLFPLPKTGHCPHDERPAECLAIMKPFLEEVYSVD
QERK*

mRNA from alignment at chr27:107508..110404+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G00300.1 ID=NO27G00300.1|Name=NO27G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2897bp|location=Sequence derived from alignment at chr27:107508..110404+ (Nannochloropsis oceanica)
ACACGACAGACACTAGGCATCTCTTAGAAAATGCGGCAGCTGCAGCAGCA
GCCGCCGTCAAAGGCATGGAAAGGCCTTCTATTCCTCATCATCATGGCCA
GCACAATTATTACGCATGCCTTCCTCCTCCCACACTCCACGACGCCTTCC
ACGCATCGATCGGCTCCTCTATTGGTCCCTGGCTTGGTTGAATCCCCTCC
TCCTCTTTCTTTCTGTCTCCTAAGTGCCCCTTTCCCAAGCCCTCGTGTCC
TTCCTCCTCGACATGCCAGCACGCTTGAAGCACCCCCATCTTCTTCCCCT
CCTCCAACACGTCGGCCTCCCAAACGCAATTTTGAGGCATGGACGTGGAA
AGGGCACCGTATCAACTATCGGGTGGAAGGCGATGAGACGGTAGGGGTGT
GGAAGGGATGAAGATCGGGGCTTGGTGGAGGGAACTTCCGGGGAAAGGGA
GGAGAAGAAGATGGAGAGCATTGTCCGTGATTTTGCTTTTGGCGTCGCCG
CCAACAGCCTAATCAAGGATTACCTTTTCAACGAATTTTTGTTTCCCCTT
TAAACCTCATCGCCGTGTTCCTTCATCCTTTTCCTTTCCTTCCTTTCACA
GGACCCGCCCATCCTCCTCATTCACGGTAAGTCGCAAGGACGAAAGAAAG
CCGAGAAATGAAGGCTTAAAAAATGAGTGATGGGAAAGGGAAACTTACTA
CAGCTAACGATACTGATTGTGCAATGCTCACATCATTATCCTCTTCACTC
CATATTGTTATCAGGTTTTGGCGCGAGCGTCAGCCATTTCCGAAATCAGT
TTAAAGACCTCCCACCTCTAGGCAAGTTCCCAGAGTCTTGGAAACAAATC
ATGGAAGTGATGATAAATTAGAAGCTTGTAAACAGATATCTGTCTGTTTG
GGATATCCAAAGCGTCAAGAAATCGGACATTGCTGCACCTCTTTGTTTTT
TCGTTAATTGATAAATGCGCGATACTTCTCTCCCCTCTTGCATACGTCCA
TCCCTTCCCTTTTAGGATATCGCGTGTTTGCCGTCGATCTCCTCGGTTTT
GGAGGAAGCGATAAAGTGAAGGAAGGCGTAGAGTACGAGCTGGAGCTCTG
GAGGGACTTACTTGTGGATTTCATGGAGGTACGCATAGGCGTGATAAACA
TAATTAAACGAAATTTGCTGTACAGGTGAGTCATGCTCGACTCATTCTTA
CATGCTTCCTCACGCCCTCCTCGTCTGCTTTCCATTTGTCATAGGAAATG
GAACGGCGCGGCTCGGCCTCATCTTCGCTTGGATGGACCGTAGGCGGTAA
CAGCATCGGTGGCCTGCTTACAATGATGGTGGCTATTGCCCAAGGCAAAG
AAAAGGTAAAGGGTTGTGTACTCTTTAACGCTGCCGGAGGATTGACCAGT
TTTAGAGACGAGGAGCTGCCGTGGGTATTAAGGCCGCTGTGGGTATTTGT
GCGGGTGGTCCTATTTGGCGATATTTTTGGACCTGGCTTGTTCAAGCGCT
TCGCAACGGAAGAGAATGTACGCTCGGTGCTGAGTCAGGTAACAATCAAA
GAACGGAAAAGGGGTAAAAAGGGAATGGGATTGTAGGAGAAGGTAAAGGA
TAAAAGAGATGCAGCATGCGCATGCGCGCATTCTTTGGTCGCATGGTGAT
TGAGTACCTTGTGTCAGAATCTTGGATGATCCATTAGGCATAGTGTGTGA
GCAAATGTACACCAGAAAACAAAGCCTTTTTCTTCTCCTTTTCACCCTCT
ATTTCGCGCATTTTTCCAACCCTATCTCAGGTCTATGGCAACAAAACTGC
AGTCGACGACGAGCTTGTGGACATCCTGCTTACTCCCGGGGGAGATGATG
GCGCGGAAGAAGTTTTTCTCAAGGTGCTGAGGGCGCCGGCAGGTCCCTCT
CCTAAGCAGCTCTTGCCACGGATTCAGGTCCCAATTATTGGAATCTGGGG
GGTAAGTAGGTGTCGAGGGAGGGCGAGGAGAAAGGTTGGTGGGAAGAAAG
GAGGATGAGAGAGATGGGAAGAGCAAGCTCACAAGATGATGCTGAACGTG
GTTGACCTGACGGAGAGGAACAATATCACAGACCTGACTTAGGAGAGCCA
TCGCATTGACTTGATGTAGGATGTGTAGACAATTTCCTAACGGATGGAGG
AACATCTGGTCACTTTTTTTTAAGGGATCATTTTGAGCATGGTCGCCAAG
CACTTTGCAGGGGTGGATGCATGCAATCATCTCATTCACCGCAATATCCT
CCGTTAGGTCGATAACGACCGTGTCGTCAGTCAAGTCTATGAGCTGCATT
GTGGGCGACCATGCTACATGTTGTCCATTTCTAATATTACGACTCCTAAC
ACACTCTTAATATTTCCTTGACAGGAGGATGACCCTTGGACACCCATAAA
CACAGGTAAGTCGCACAAGCGCGCCTCCATCTTTCATCACCTCCGTGCCT
GGTTCCTTTAAAATACCTTCTCCTCTGCCCTTCCACCCTCCTCCTTTCGT
TTTCCCCTTCCCTTCCTCCATCAGGCATGCACCCCGGCATCAAGTTCTCG
CAATATCAACCCGCTTTCCGCCTCTTCCCGCTGCCCAAGACTGGCCACTG
TCCACATGACGAGCGACCGGCTGAATGCCTCGCGATAATGAAACCTTTTC
TAGAAGAAGTTTACTCTGTGGACCAAGAAAGAAAGTAGACAAGAAGGTGT
TGGGAAAATGAGGGTGGGTTATTAAATGTACAGATAGGTAATTGACAAAA
TTAATGATATCCATTGAGACATAGGCGTAAACAAGCAACGTCTATGCGAG
GCTTGATCATGAGAAGAAAAGAGAAAGAAAGGAGAAGAAAGGAAGACTCA
ACAAATAAACAAACGAACGAAGAACGAAAACTTCGAGGAACAGAAGA

Coding sequence (CDS) from alignment at chr27:107508..110404+

>NO27G00300.1 ID=NO27G00300.1|Name=NO27G00300.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr27:107508..110404+ (Nannochloropsis oceanica)
ATGCGGCAGCTGCAGCAGCAGCCGCCGTCAAAGGCATGGAAAGGCCTTCT
ATTCCTCATCATCATGGCCAGCACAATTATTACGCATGCCTTCCTCCTCC
CACACTCCACGACGCCTTCCACGCATCGATCGGCTCCTCTATTGGTCCCT
GGCTTGGTTGAATCCCCTCCTCCTCTTTCTTTCTGTCTCCTAAGTGCCCC
TTTCCCAAGCCCTCGTGTCCTTCCTCCTCGACATGCCAGCACGCTTGAAG
CACCCCCATCTTCTTCCCCTCCTCCAACACGTCGGCCTCCCAAACGCAAT
TTTGAGGCATGGACGTGGAAAGGGCACCGTATCAACTATCGGGTGGAAGG
CGATGAGACGGACCCGCCCATCCTCCTCATTCACGGTTTTGGCGCGAGCG
TCAGCCATTTCCGAAATCAGTTTAAAGACCTCCCACCTCTAGGATATCGC
GTGTTTGCCGTCGATCTCCTCGGTTTTGGAGGAAGCGATAAAGTGAAGGA
AGGCGTAGAGTACGAGCTGGAGCTCTGGAGGGACTTACTTGTGGATTTCA
TGGAGGAAATGGAACGGCGCGGCTCGGCCTCATCTTCGCTTGGATGGACC
GTAGGCGGTAACAGCATCGGTGGCCTGCTTACAATGATGGTGGCTATTGC
CCAAGGCAAAGAAAAGGTAAAGGGTTGTGTACTCTTTAACGCTGCCGGAG
GATTGACCAGTTTTAGAGACGAGGAGCTGCCGTGGGTATTAAGGCCGCTG
TGGGTATTTGTGCGGGTGGTCCTATTTGGCGATATTTTTGGACCTGGCTT
GTTCAAGCGCTTCGCAACGGAAGAGAATGTACGCTCGGTGCTGAGTCAGG
TCTATGGCAACAAAACTGCAGTCGACGACGAGCTTGTGGACATCCTGCTT
ACTCCCGGGGGAGATGATGGCGCGGAAGAAGTTTTTCTCAAGGTGCTGAG
GGCGCCGGCAGGTCCCTCTCCTAAGCAGCTCTTGCCACGGATTCAGGTCC
CAATTATTGGAATCTGGGGGGAGGATGACCCTTGGACACCCATAAACACA
GGCATGCACCCCGGCATCAAGTTCTCGCAATATCAACCCGCTTTCCGCCT
CTTCCCGCTGCCCAAGACTGGCCACTGTCCACATGACGAGCGACCGGCTG
AATGCCTCGCGATAATGAAACCTTTTCTAGAAGAAGTTTACTCTGTGGAC
CAAGAAAGAAAGTAG

Synonyms

Publications