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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr27 | genome | chr27:76578..81392 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO27G00220.1 vs.
Match: XP_005852387.1 (hypothetical protein NGA_0727900 [Nannochloropsis gaditana CCMP526]; EKU23445.1 hypothetical protein NGA_0727900 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 177.9 bits (450), Expect = 9.500e-41 Identity = 85/151 (56.29%), Postives = 108/151 (71.52%), Query Frame = 0
Query: 478 MPSGRWRARHGQSRIYGCTQWHMLHYTLAYEMAMHPDVQGLLLSLKDTGIPDESFFATAALWLQSTA-AKQNRPQLPIVGGDMKYRNEGFRRDLRYEGEKDKIKRLGTQKSHLWARKAYTAHVTCDYTNYILGLSQDCSPYEGLEEISEIQ 628
MPSG+WR R G I G +QWH++H+TL YE+ + P VQ LLLSLK TGIPDESFF TA LWLQ A A++ +L I+ D++Y NE RRDL Y GE+ K+K LG K+ LWARKA TA VTC+YTN L L DC+PYEG++ I +++
Sbjct: 1 MPSGKWREREGFGHIAGGSQWHIVHWTLLYEVVVDPQVQKLLLSLKTTGIPDESFFPTAGLWLQEKAQAREKGLRLRILNLDLRYSNESHRRDLSYPGERAKLKHLGQTKNKLWARKALTAKVTCEYTNDFLRLHHDCAPYEGMQPIIDVE 151
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO27G00220.1 ID=NO27G00220.1|Name=NO27G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp ATGAAAAGAGATAGGGTTATCATATCGTCCTCCTCCTTCCACTCTACGTC CTCTTCCCGACCTTCGCCCACATCGTCATCGCCGTTGAGGCTCCTTCGGT CAACACGGAAGAAATGGGGTCTCATGCTGTCCACGGTGGCCATCCTAGGG CTTCTCACCGTGGGGGATTTAATGGCACTACCCTCCTTGACGAAGGAGGC GGTCGAAATCACTGAGGCGTCGCTCAATGTGCTTCATTCCATCCCTGACA GCCAACGGGATTTTTCGTACGCCAACTACGATGACAACCCACTGCTCAAG GGCGTCGAAATGCGCCCTGTGGCCAAGGCCTCCTCCGCTTCCCTGGCCAA CAGCAGCGTACTCCTCGCCCTCAGCCCTTCCTCTCCCCTCATTGCCATCT ACGACAACACCACCTGCATGTACGGCGGCGTCCTTACTACTCATGGCTGT GTCTGTGGGCGACGGACTGCGGGCTACCGATGTGAAGAGCTCCTGGTCTC TGAGGCAGAGATCAAGAAACAGCAAATGTGTGGAAAGACGTGCTGGGCCG GATATGTTTGGTACAACACGCTGGGATTCAAGTACACAAATATTCCTCCC GAGGAAGAAGAAATTTGGCAGAAAGTGAAGAATTTTCTGGCTTGGTCTCA CGGGGGAGTGCTGCGGCAAGTGCCGCAGCAGCTGGAAGCTGTGGCACGGC TCGATCCCGTCGTCGAAGAGTGGTTGGAGGCCCTGGGACCCTTTACGCTC GCCGACAGGAAGATGATTGACACGTGGCGCTCGTACAGGCACAAGGAGCT GGACAAGGTGGAGGCACGGCACCTGGCCCGCATCGCCCGGCCGGAAGAGC TCGCCAAAAAGGACAGAGCTCGCCTCTGCTTCGGATTGATCATCCACAAG GATGCTGCTCAGTTCGAGGCCCTGTGGCGGGTCATATATCGCCCCCACCA TCATTACGTCATCCACATTGACCGTGGCGCCGATCCGAGCCTCAGGGAGC AAATCCTGCAAACAATAGAGGCCACGCCATTCTCCACGCTCCTGGCCGAT GCAGAAACGCAGGCGCACATTCCGCCCTCCTCCTCTCCCTCCTTCTTCCT CCCCAAAAATGTGTGGGAGAACGTGGACGTGGTGCCGGAGGAGGAGTCGG TGAACGCTTTGTGGGGAGATATCACTCTGGTCTACCTTGAGGCCATCATA TGGCTACATGCCTTCCGGCACGAGCACTGGGAATGGGACTACTTCGTTAA TTTGTCTGGATCCGACATTCCTATTGTCTCGATCCCTGACATCGAGCAAT ACCTCGGTCTGCGCGCTCCCGGCTCGTTCCTTCACTTCCACGCCAATGCG CAGGAATTTAGACAGACGCATATCTTCCCAGAGCGGTCGAGGGAAGGGGA GGTTATTGTCCTGAGTCCATTCCAGGCCGAGATGCCCTCGGGTCGATGGC GGGCTCGACACGGTCAGTCGCGAATCTACGGGTGCACCCAATGGCACATG CTCCATTACACTCTGGCCTACGAGATGGCGATGCATCCCGACGTCCAAGG GTTGTTGCTGTCCCTTAAAGACACCGGCATCCCTGACGAGTCTTTCTTCG CTACCGCCGCGCTTTGGCTCCAAAGTACTGCCGCAAAACAGAATAGACCC CAGCTGCCAATCGTCGGCGGGGACATGAAGTATCGCAATGAAGGATTTCG ACGGGATCTTCGCTACGAGGGAGAGAAAGACAAAATTAAACGCCTGGGAA CACAAAAGAGCCATTTATGGGCCCGGAAGGCGTACACAGCACATGTCACG TGTGACTACACAAATTACATATTGGGGCTGAGCCAAGACTGCTCGCCGTA CGAAGGATTGGAAGAAATCTCAGAAATTCAATAA back to topprotein sequence of NO27G00220.1 >NO27G00220.1-protein ID=NO27G00220.1-protein|Name=NO27G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=628bp MKRDRVIISSSSFHSTSSSRPSPTSSSPLRLLRSTRKKWGLMLSTVAILG LLTVGDLMALPSLTKEAVEITEASLNVLHSIPDSQRDFSYANYDDNPLLK GVEMRPVAKASSASLANSSVLLALSPSSPLIAIYDNTTCMYGGVLTTHGC VCGRRTAGYRCEELLVSEAEIKKQQMCGKTCWAGYVWYNTLGFKYTNIPP EEEEIWQKVKNFLAWSHGGVLRQVPQQLEAVARLDPVVEEWLEALGPFTL ADRKMIDTWRSYRHKELDKVEARHLARIARPEELAKKDRARLCFGLIIHK DAAQFEALWRVIYRPHHHYVIHIDRGADPSLREQILQTIEATPFSTLLAD AETQAHIPPSSSPSFFLPKNVWENVDVVPEEESVNALWGDITLVYLEAII WLHAFRHEHWEWDYFVNLSGSDIPIVSIPDIEQYLGLRAPGSFLHFHANA QEFRQTHIFPERSREGEVIVLSPFQAEMPSGRWRARHGQSRIYGCTQWHM LHYTLAYEMAMHPDVQGLLLSLKDTGIPDESFFATAALWLQSTAAKQNRP QLPIVGGDMKYRNEGFRRDLRYEGEKDKIKRLGTQKSHLWARKAYTAHVT CDYTNYILGLSQDCSPYEGLEEISEIQ* back to topmRNA from alignment at chr27:76578..81392+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO27G00220.1 ID=NO27G00220.1|Name=NO27G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=4815bp|location=Sequence derived from alignment at chr27:76578..81392+ (Nannochloropsis oceanica) ATGAAAAGAGATAGGGTTATCATATCGTCCTCCTCCTTCCACTCTACGTC
CTCTTCCCGACCTTCGCCCACATCGTCATCGCCGTTGAGGCTCCTTCGGT
CAACACGGAAGAAATGGGGTCTCATGCTGTCCACGGTGGCCATCCTAGGG
CTTCTCACCGTGGGGGATTTAATGGCACTACCCTCCTTGACGAAGGAGGC
GGTCGAAATCACTGAGGCGTCGCTCAATGTGCTTCATGTACGTTAAGATG
AAAGGGAAGGACTAAAAAGATAAAGGGAGGAGGGATGCGGGGAGGGATGG
AGGAAGTGCAGGGACAAGAAGGAAGGGACATGGGGTTATACTTACACATA
TTTAACCTATGACTTCCGAGCTCACCGCACGTCATTTCTATCCTTCGTTT
CCATCGTGTTATTCAGTCCATCCCTGACAGCCAACGGGATTTTTCGTACG
CCAACTACGATGACAACCCACTGCTCAAGGGCGTCGAAATGCGGTGAGGG
GCAGGGAGGGAGGAAAGGAGAAAAGGAGGGAGTAATGAGGTCTTCCGTCC
TTGTATTTTCATATTAATTCTGTCCTTCTCAATACATTTAATTCTGCATC
TCTCCCTCCCTTCCTTCCTTCCTCCCTCCCTCCCTTTCCTCCAGCCCTGT
GGCCAAGGCCTCCTCCGCTTCCCTGGCCAACAGCAGCGTACTCCTCGCCC
TCAGCCCTTCCTCTCCCCTCATTGCCATCTACGACAACACCACCTGCATG
TACGGCGGCGTCCTTACTACTCATGGCTGTGTCTGTGGGCGACGGACTGC
GGGCTACCGATGTGAAGAGCTCCTGGTACGTCCTCCCTCCTTCTCTCCTT
CCCTCCCTCCTTCCCTCCCCCTCTCCCTTTGGAGCGCCCGCTAATTCTCT
GCTCCCGTTTGTTCTTCCCTCCCTCCCCCTTTCCCTCCCTCCCTACCGTA
GGTCTCTGAGGCAGAGATCAAGAAACAGCAAATGTGTGGAAAGACGTGCT
GGGCCGGATATGTTTGGTACAACACGCTGGGATTCAAGGTAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAAGGAGATGATGAGTGGAAGGGGTGTAGGTGGTCGAGGACTGCGTG
TTTTAAGGGCGGGGATGAGTGGGTATCATAACTATTACCTTTTTTTAAAT
TATTATTTTTTTTTTTAATTATGATTACTTTATTTAATATGTTTACGATG
GGGATTGACCGTTGGTAAAATCTGCGGGTACGCACCACCAGGGGTGCAAG
ATGTCTCACTCTTGCTCCTTCCATTCCGTCTTCCATCCCTCCCTCCCTCT
TGATTAGTACACAAATATTCCTCCCGAGGAAGAAGAAATTTGGCAGAAAG
TGAAGAATTTTCTGGCTTGGTCTCACGGGGGAGTGCTGCGGCAAGTGCCG
CAGCAGCTGGAAGCTGTGGCACGGGTAGGGAGAGAGGGAGGGAAGCAGGG
AGAGAGGGATGGAGGGAGGGAGGGAGGTATCTTTCTGGCTTAGGATCATG
GTGGACTCTTTCGCAGCAAGGGTAGGAAAGGAGGGGAGGAAGAGAAGGAG
GCGTCTTTGAAGGGGAGCTGTAAGACGGCTCTCTCACTTTCTTTCCCCCT
CCCTCCCTCCCTCCTTTCTTAGCTCGATCCCGTCGTCGAAGAGTGGTTGG
AGGCCCTGGGACCCTTTACGCTCGCCGACAGGAAGATGATTGACACGTGG
CGCTCGTACAGGCACAAGGAGCTGGACAAGGTGGAGGCACGGCACCTGGT
ACGTCTCTCCCTCTCTCCTTTCCTCCCTCCCTTCCTCAGTCCCTTCCTCC
CTCTTTCCTTTGAGGCAAGGCCTCCCGTCTTTCTGACCCCCCCCCTCCGA
AGCTTTCCCTCCATTTCTCCCGACTGCCTTTCAATCGATGTTGCCACCTC
CCTTCCCACCCCATCCCAGTCCTTCCCACCCCATCACTTTGATCGCCCCG
AGCTTGCAGAGTGTGCATTACCTGCAGGACTCATTCCCCTCTGTCCTCCC
TCCCTCCCTCCCTCCCTCCCCTCCTCTCTCTCTCCCCTCCTCCTTCCCTC
CCCTCCTCTCTCAGGCCCGCATCGCCCGGCCGGAAGAGCTCGCCAAAAAG
GACAGAGCTCGCCTCTGCTTCGGATTGATCATCCACAAGGTTGGAAAGAA
GGAAGGGAGGAAGAGAGAGAAGGAGGGTGGGAGGGAGGGAGGAAGGAAGA
GACGAGGGTGCCAGGAGTACCACGAGACTCTCCAGAGGACCGTGTGATTC
AATCGAACCTACCTACCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CTCCTAGGATGCTGCTCAGTTCGAGGCCCTGTGGCGGGTCATATATCGCC
CCCACCATCATTACGTCATCCACATTGACCGTGGCGCCGATCCGAGCCTC
AGGGAGGTAAGTCCTCCAGGTCCTCCCTTCCTCCCCTCCTCCGTCCCTCC
CTCCCTCTTTCCCGCATTCCATAGGATGTTTGATTTCCCTCATAAAGCTC
GCTGCCTTTCGCCCTCAATCCTCTCCCCTCTCAGCAAATCCTGCAAACAA
TAGAGGCCACGCCATTCTCCACGCTCCTGGCCGATGCAGAAACGCAGGCG
CACATTCCGCCCTCCTCCTCTCCCTCCTTCTTCCTCCCCAAAAATGTGTG
GGAGAACGTGGACGTGGTGCCGGAGGAGGAGTCGGTGAACGCTTTGTGGG
GAGATATCACTCTGGTCTACCTTGAGGTAAAGGGGAGGAAGGGAAGGAGG
GAGGGAGGGAGGGAGGGAGGAGTAAGTGCTCATGCATCTATGATTCTGAG
CAAGAGAGGGGTTCAAAAACGTGTGAATCGTGGTAATCCCTCCTTTCCTC
CCTCCCTCCCTCCCCCCCTCCCTCCCTCCCCCTTGAAGGCCATCATATGG
CTACATGCCTTCCGGCACGAGCACTGGGAATGGGACTACTTCGTTAATTT
GTCTGGATCCGACATTCCTATTGTCTCGATCCCTGACATCGAGGTAGGGG
GGAACATGCGTACAGCCTTCTTCTTCTTCTTCTAATTGGCGTCCAGAATT
GCAAGACTAGACTAACCCACTGCTCTCCGCCTCCTTCCCTGTCCATCACT
CCCTCTGTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCAATAC
CTCGGTCTGCGCGCTCCCGGCTCGTTCCTTCACTTCCACGCCAATGCGCA
GGAATTTAGACAGACGCATATCTTCCCAGAGCGGTCGAGGGAAGGGGAGG
TTATTGTCCTGAGTCCATTCCAGGTAAGTGGGGAGGAAGGCATAAAAAGA
GAAGGAAGGGGAGGAGGGGTGAAAGGGTGAGAGTTTGGTAGGGGACGGAA
GGCGGCTAAGAGATGATGGAGGCACAGGGAAGAGAGAGGGATAGAAGAAA
GATGTGGGAAAGGGGCACGGGGCAAAATAATTCAAGAATCCGTGGCTGAG
ACCGGCTGAGTCGTCCTTCTCAGTTCATCATGCCTTGTATTCATTTCACC
CGCGGAATCTCCTCTCATCCAATCTCGTCTATATCTGCATTCTTCCTCTC
CCTCCCTCCCTCCCTTCCTCTTTCCCTCCTTTCCTGTCGCACGCCCAGGC
CGAGATGCCCTCGGGTCGATGGCGGGCTCGACACGGTCAGTCGCGAATCT
ACGGGTGCACCCAATGGCACATGCTCCATTACACTCTGGCCTACGAGATG
GCGATGCATCCCGACGTAAGGAGAGAGAGGGAGAGGGGGGGGAGTGGAAG
GGGCAGGAGGAAAGATAACCTTAAGCTGCCTGTTTGGAGCGTGTTTATTT
TGCCTTGTACTTTAAGTCATCGTCCACGATACTCACTTCAATCTCCTTCG
TATTCATTTGCCTTTCCTTTTTTACCCAGGTCCAAGGGTTGTTGCTGTCC
CTTAAAGACACCGGCATCCCTGACGAGTCTTTCTTCGCTACCGCCGCGCT
TTGGCTCCAAAGTACTGCCGCAGTAAGTTCTACCGAAGTCTTGCACGCTG
GTTTGGTTCATCTTCTCCTAATTCGTCCATCTTACACGCCTTTGGCTCAT
CCCTTATAAATTAAGAAACAGAATAGACCCCAGCTGCCAATCGTCGGCGG
GGACATGAAGTATCGCAATGAAGGTATGCAAAAGCCGAACAGAGGGAAGG
AAAAAAAGGAGATAGGAGACTTTAAAATTCTTCGACACGAGAGAGAATGG
CGGACTCGCGTCTTTCGGCTCAATACCTTAGCGCGCTCTGATTGCACGCC
TGCCAAGGGAGCTTGTTTGAATCACATTGTCTGTGATACTTGGATGGCAC
GGATTTAAGCGCTTTGGGACTTTTCTCCGTTTAATTGTCGCTATCTTTTT
AACACCCCTTTTCCCTCTCTACCATCATACAAAGGATTTCGACGGGATCT
TCGCTACGAGGGAGAGAAAGACAAAATTAAACGCCTGGGAACACAAAAGA
GCCATTTATGGGCCCGGAAGGCGTACACAGCACATGTAAGTATCAAGAGG
AGCAAGAGGGAGGGGGATTCTCTGGAGAAGGAGGAGGAACGGTATGTTAT
ATTTATTATATATACTATTGTTCTCGATTTTTGCATCTTTACTTGATACG
GGCTGAATCTGCGCATACGCATTTGTTTCCATGTGTCACTAATTTTATAC
CAACCAATGCGCAACCATACACCAGGTCACGTGTGACTACACAAATTACA
TATTGGGGCTGAGCCAAGACTGCTCGCCGTACGAAGGATTGGAAGAAATC
TCAGAAATTCAATAA back to topCoding sequence (CDS) from alignment at chr27:76578..81392+ >NO27G00220.1 ID=NO27G00220.1|Name=NO27G00220.1|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at chr27:76578..81392+ (Nannochloropsis oceanica) ATGAAAAGAGATAGGGTTATCATATCGTCCTCCTCCTTCCACTCTACGTC CTCTTCCCGACCTTCGCCCACATCGTCATCGCCGTTGAGGCTCCTTCGGT CAACACGGAAGAAATGGGGTCTCATGCTGTCCACGGTGGCCATCCTAGGG CTTCTCACCGTGGGGGATTTAATGGCACTACCCTCCTTGACGAAGGAGGC GGTCGAAATCACTGAGGCGTCGCTCAATGTGCTTCATTCCATCCCTGACA GCCAACGGGATTTTTCGTACGCCAACTACGATGACAACCCACTGCTCAAG GGCGTCGAAATGCGCCCTGTGGCCAAGGCCTCCTCCGCTTCCCTGGCCAA CAGCAGCGTACTCCTCGCCCTCAGCCCTTCCTCTCCCCTCATTGCCATCT ACGACAACACCACCTGCATGTACGGCGGCGTCCTTACTACTCATGGCTGT GTCTGTGGGCGACGGACTGCGGGCTACCGATGTGAAGAGCTCCTGGTCTC TGAGGCAGAGATCAAGAAACAGCAAATGTGTGGAAAGACGTGCTGGGCCG GATATGTTTGGTACAACACGCTGGGATTCAAGTACACAAATATTCCTCCC GAGGAAGAAGAAATTTGGCAGAAAGTGAAGAATTTTCTGGCTTGGTCTCA CGGGGGAGTGCTGCGGCAAGTGCCGCAGCAGCTGGAAGCTGTGGCACGGC TCGATCCCGTCGTCGAAGAGTGGTTGGAGGCCCTGGGACCCTTTACGCTC GCCGACAGGAAGATGATTGACACGTGGCGCTCGTACAGGCACAAGGAGCT GGACAAGGTGGAGGCACGGCACCTGGCCCGCATCGCCCGGCCGGAAGAGC TCGCCAAAAAGGACAGAGCTCGCCTCTGCTTCGGATTGATCATCCACAAG GATGCTGCTCAGTTCGAGGCCCTGTGGCGGGTCATATATCGCCCCCACCA TCATTACGTCATCCACATTGACCGTGGCGCCGATCCGAGCCTCAGGGAGC AAATCCTGCAAACAATAGAGGCCACGCCATTCTCCACGCTCCTGGCCGAT GCAGAAACGCAGGCGCACATTCCGCCCTCCTCCTCTCCCTCCTTCTTCCT CCCCAAAAATGTGTGGGAGAACGTGGACGTGGTGCCGGAGGAGGAGTCGG TGAACGCTTTGTGGGGAGATATCACTCTGGTCTACCTTGAGGCCATCATA TGGCTACATGCCTTCCGGCACGAGCACTGGGAATGGGACTACTTCGTTAA TTTGTCTGGATCCGACATTCCTATTGTCTCGATCCCTGACATCGAGCAAT ACCTCGGTCTGCGCGCTCCCGGCTCGTTCCTTCACTTCCACGCCAATGCG CAGGAATTTAGACAGACGCATATCTTCCCAGAGCGGTCGAGGGAAGGGGA GGTTATTGTCCTGAGTCCATTCCAGGCCGAGATGCCCTCGGGTCGATGGC GGGCTCGACACGGTCAGTCGCGAATCTACGGGTGCACCCAATGGCACATG CTCCATTACACTCTGGCCTACGAGATGGCGATGCATCCCGACGTCCAAGG GTTGTTGCTGTCCCTTAAAGACACCGGCATCCCTGACGAGTCTTTCTTCG CTACCGCCGCGCTTTGGCTCCAAAGTACTGCCGCAAAACAGAATAGACCC CAGCTGCCAATCGTCGGCGGGGACATGAAGTATCGCAATGAAGGATTTCG ACGGGATCTTCGCTACGAGGGAGAGAAAGACAAAATTAAACGCCTGGGAA CACAAAAGAGCCATTTATGGGCCCGGAAGGCGTACACAGCACATGTCACG TGTGACTACACAAATTACATATTGGGGCTGAGCCAAGACTGCTCGCCGTA CGAAGGATTGGAAGAAATCTCAGAAATTCAATAA back to top
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