NO27G00160.1, NO27G00160.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G00160.1
Unique Name	NO27G00160.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2412
Alignment location	chr27:46479..54317 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:46479..54317 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO27G00160.1 vs.
Match: CBJ27958.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 561.2 bits (1445), Expect = 5.100e-156
Identity = 332/800 (41.50%), Postives = 462/800 (57.75%), Query Frame = 0

Query:    1 MDSSMPFELAAELRGHDGSVRTM-CVLGGEEGGHQQLISGGDDGTIKRWL----RAETGSHVAFECIETITEAEHWLLALLPLPPGMITEAPQGGFIAASQDKMIRVYDVEGKRLRLLVGHQHGVISLSWTAGGQLVSGSWDGTAKVWDVETGQVLLTLGEHENGVCVLGLPNGDIATGSTGREEGGKIVDVQIRLWRE-GKVFKTAREHTGPVRSLALWPDVGFLSTSNDGSVRLYSFDGEPLSSVQAPPGPDGSPPFVYRAAPFSGPCGVMEVAAAGEDGAVNVWRGETLIQRIQHPRGLWTVLSSGSPTGDTELVTGCHDGVIRVFSRDPTKQGPEELRAAFVQAGKEALEKQAKGGAGGPTAEEVASLPPWEDRQSQHGKKDGSIQLFRKGGTAIAASWSAEILTWVEIGEVTGSSNAGSVNGVAYDHVFPIELEQPGGAGVQNLQIGYNNNQNPFQAAQTFIDAHMLPQRYLSEIADYISQRAGQAAPILGGGAAVASASVSSAATASTFIGQPP----SLPSPPS-----------AARYFPRVGYVVFDAGQLDKISAKIMEFSKDPALASLP-------FDEAALSSLVATLQATSRYHANQVKESEMKALLSLLHGWPADKIFPLLDLLRMTVLHPSLK---------GDGLPPTQLAHIISLCEKNPTSAPIAMLTLRLLANLCRHSGTRRLLVAAPPSPSSCLLPALSLAAQHAASTNKSVRGAAAALLLNLSVLLTSEIDFPSSSFPPPPSAVTALVNPGVSSLLSGEGGKEEDVALKAAVALGTLLS 764
            M    PF L+AE+ GH+G VR +  +L G      +L S   D T + W     ++E G  V ++  ET+ +  HW+++L  LPPG++ E PQGG +    DK++RVYD +GK+ R+L GH+ GVIS SWTA GQL+SGSWDGTAKVWDV  G  + TLG HENGVCVLGLP+G +ATGSTGR++ G++VD QIR+W E G+  KT R+H+GPVRSL L P +GFLSTSNDGS RL+S DG PL+++  P   +G P FV +    +G  G  E  +  E G   VWRG    Q I HP GLW V +   P GD    TGC D V+RV++R P +  P E+  AF Q+  +   K  +    GP+A E+A+LP WE++ +  GK +G +Q+F++ G AIAA WSA   TW+E+GEV G+S AG V+G  +D V+PIE+E  GGA V+ LQIGYNN QNPF AAQ FID + LPQ YL+EIAD++++RAG++AP +G  A  A A   +AA   + +G P     + P PP               +FP   Y  F+ G L K+  KI E +     A LP        + A+L SL ATL A+SRYH +++   E+  L  L+ GWP DK FP +DL R+  LHP            G G     +  +     +     P+ +  LR  +NL RH  ++++++      +S +L A S  A      NK+V+ A A L LNL+V   S  +  ++        + AL +  +    +  G   +D   ++   LGTL++
Sbjct:    1 MSDFQPFALSAEMLGHEGPVRAVQALLDG------RLASASQDHTARLWTPKDGKSEGGGGVYYDIGETLADHNHWVVSLAALPPGIVPECPQGGLVTGCLDKLVRVYDHQGKQQRMLQGHEGGVISFSWTAAGQLISGSWDGTAKVWDVAGGVCVFTLGGHENGVCVLGLPDGKVATGSTGRQDSGQVVDFQIRIWSETGQQIKTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGG--ESVSVDESGGCIVWRGSERGQSIPHPSGLWCVCA--LPNGD--FATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKTKQ----GPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGA-VRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGESAPTIGMDAGAAGA---AAAAGFSGVGDPTGFANAAPPPPGLRGGAGAASGVGGGHFPVTTYATFETGVLSKVEGKIRELN-----AGLPEGVKMSESESASLGSLSATLAASSRYHISKIAPQELALLARLVSGWPVDKCFPCIDLCRLAALHPHFAEVLALAETGGSGGGGGLIKAVADKLGEGKGLMPVVLCGLRFFSNLFRHRSSKKVVL----GHASTILDAASDQADGGGVDNKTVKLALATLFLNLAV--ASHQEALTAGLGDAYQQLVALYSEVLGGATAAFG---DDALYRSLAGLGTLVT 766

The following BLAST results are available for this feature:

BLAST of NO27G00160.1 vs.

BLAST of NO27G00160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ27958.1	5.100e-156	41.50	conserved unknown protein [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO27G00160	NO27G00160	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00160.1	NO27G00160.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO27G00160.1.cds1	NO27G00160.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds2	NO27G00160.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds3	NO27G00160.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds4	NO27G00160.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds5	NO27G00160.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds6	NO27G00160.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds7	NO27G00160.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds8	NO27G00160.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds9	NO27G00160.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds10	NO27G00160.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds11	NO27G00160.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds12	NO27G00160.1.cds12	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds13	NO27G00160.1.cds13	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds14	NO27G00160.1.cds14	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds15	NO27G00160.1.cds15	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds16	NO27G00160.1.cds16	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds17	NO27G00160.1.cds17	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds18	NO27G00160.1.cds18	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds19	NO27G00160.1.cds19	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds20	NO27G00160.1.cds20	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds21	NO27G00160.1.cds21	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds22	NO27G00160.1.cds22	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds23	NO27G00160.1.cds23	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds24	NO27G00160.1.cds24	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds25	NO27G00160.1.cds25	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds26	NO27G00160.1.cds26	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds27	NO27G00160.1.cds27	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO27G00160.1.cds28	NO27G00160.1.cds28	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr27:46479..54317-
coding sequence from alignment at chr27:46479..54317-

mRNA sequence

>NO27G00160.1 ID=NO27G00160.1|Name=NO27G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2412bp
ATGGATTCTAGCATGCCCTTTGAGCTGGCGGCGGAGCTGCGGGGCCACGA
CGGAAGTGTGCGCACGATGTGCGTGCTGGGGGGAGAGGAAGGAGGGCATC
AGCAGCTCATCTCGGGAGGGGATGACGGGACTATAAAGCGATGGCTGCGT
GCAGAGACTGGGTCACACGTCGCCTTTGAGTGTATCGAAACAATCACTGA
AGCCGAGCACTGGCTGCTGGCCCTCTTGCCCTTGCCTCCGGGAATGATAA
CGGAGGCGCCCCAAGGAGGGTTCATCGCGGCCTCGCAGGACAAGATGATC
CGCGTATACGATGTGGAGGGCAAGCGCCTCCGCCTCCTTGTGGGGCACCA
ACACGGCGTCATCTCCCTCTCGTGGACGGCGGGGGGGCAGCTCGTGAGTG
GGAGCTGGGATGGCACGGCCAAGGTGTGGGACGTGGAGACCGGCCAAGTC
CTTCTCACTCTCGGGGAGCACGAGAACGGAGTCTGCGTCCTGGGCTTGCC
CAATGGGGATATCGCCACGGGCAGTACCGGCAGGGAGGAAGGAGGCAAGA
TCGTGGATGTCCAGATTCGGCTCTGGCGGGAGGGGAAGGTCTTCAAGACA
GCGAGGGAGCACACAGGCCCTGTCCGGTCCTTGGCCCTGTGGCCGGACGT
GGGCTTCCTCTCCACCAGCAACGACGGCTCGGTCCGTCTGTACTCCTTCG
ACGGCGAGCCTCTTTCGTCCGTCCAAGCTCCTCCTGGACCCGACGGGTCC
CCTCCCTTTGTCTACAGGGCAGCCCCCTTCTCAGGTCCCTGTGGAGTGAT
GGAAGTGGCCGCCGCGGGGGAAGACGGCGCAGTCAATGTCTGGAGGGGCG
AGACGCTGATCCAGCGCATCCAACACCCTCGGGGCTTGTGGACCGTCCTC
TCCTCCGGGTCGCCTACGGGAGACACAGAGCTAGTGACAGGTTGTCATGA
TGGAGTCATCCGCGTCTTTTCCCGGGACCCGACCAAGCAGGGGCCGGAGG
AGCTGCGGGCTGCTTTCGTCCAGGCAGGGAAAGAAGCGCTCGAGAAGCAA
GCCAAAGGAGGGGCTGGTGGGCCCACTGCCGAGGAGGTGGCTTCCCTCCC
TCCATGGGAAGATCGACAGTCGCAGCACGGGAAGAAGGATGGCTCCATCC
AGCTCTTCCGCAAAGGGGGCACAGCCATCGCCGCTTCTTGGTCCGCCGAA
ATTCTTACATGGGTCGAGATCGGGGAAGTGACGGGGAGCAGCAACGCCGG
TAGTGTCAATGGAGTGGCGTACGATCACGTTTTCCCCATCGAGCTCGAGC
AGCCGGGAGGCGCGGGGGTCCAGAACCTGCAGATAGGGTACAACAACAAC
CAAAACCCTTTTCAAGCCGCGCAGACCTTCATCGACGCCCACATGCTCCC
TCAACGCTACCTGTCTGAGATTGCCGACTACATTTCCCAAAGAGCGGGAC
AAGCCGCGCCCATCCTCGGCGGCGGTGCGGCCGTTGCGTCAGCCTCTGTT
TCTTCTGCTGCTACTGCCTCCACCTTCATCGGACAGCCCCCCTCCCTCCC
TTCCCCTCCTTCGGCCGCCCGTTACTTTCCCCGGGTTGGATATGTCGTTT
TCGACGCCGGCCAGCTCGACAAGATCTCGGCGAAGATCATGGAGTTCTCA
AAGGACCCGGCCCTCGCTTCCCTCCCCTTCGACGAAGCCGCACTGTCCTC
CCTCGTTGCCACGCTGCAGGCCACGAGCCGATACCACGCCAACCAGGTGA
AAGAGAGTGAAATGAAAGCTCTTCTCTCTCTTCTTCACGGCTGGCCAGCC
GACAAGATCTTTCCACTGCTAGACCTGCTGCGGATGACGGTCCTCCACCC
CTCCCTCAAGGGCGACGGCCTCCCGCCCACGCAACTCGCGCACATCATCT
CCCTCTGTGAGAAGAATCCGACCTCGGCTCCCATTGCTATGCTCACGCTG
CGGCTGCTGGCCAACCTCTGTCGCCACAGTGGCACTCGCAGGCTTCTCGT
CGCCGCCCCTCCCTCCCCCTCGTCCTGCCTCCTCCCAGCCCTGTCTCTGG
CCGCCCAGCACGCGGCCTCCACCAACAAGAGCGTGAGGGGTGCGGCGGCC
GCCCTACTCCTCAACCTCTCCGTCCTCCTCACGAGCGAGATCGACTTTCC
CTCTTCCTCCTTCCCTCCCCCTCCATCGGCAGTCACTGCCCTGGTCAACC
CGGGCGTTTCGTCCCTGCTGTCCGGGGAGGGAGGGAAGGAGGAAGACGTC
GCCCTCAAGGCGGCTGTGGCGCTAGGTACACTTTTGAGCACCTCTAGCAC
AAAGTCAGCCGCCAGAGCCGCGGTGTTGCCGATCAAGGCCCAAGTGGAAG
GGCTGGGAGCATTGGGAGGGAAAGTGAGAGAGTGTCTCGAGGATTTGATC
AAAGTTTTCTAG

protein sequence of NO27G00160.1

>NO27G00160.1-protein ID=NO27G00160.1-protein|Name=NO27G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=804bp
MDSSMPFELAAELRGHDGSVRTMCVLGGEEGGHQQLISGGDDGTIKRWLR
AETGSHVAFECIETITEAEHWLLALLPLPPGMITEAPQGGFIAASQDKMI
RVYDVEGKRLRLLVGHQHGVISLSWTAGGQLVSGSWDGTAKVWDVETGQV
LLTLGEHENGVCVLGLPNGDIATGSTGREEGGKIVDVQIRLWREGKVFKT
AREHTGPVRSLALWPDVGFLSTSNDGSVRLYSFDGEPLSSVQAPPGPDGS
PPFVYRAAPFSGPCGVMEVAAAGEDGAVNVWRGETLIQRIQHPRGLWTVL
SSGSPTGDTELVTGCHDGVIRVFSRDPTKQGPEELRAAFVQAGKEALEKQ
AKGGAGGPTAEEVASLPPWEDRQSQHGKKDGSIQLFRKGGTAIAASWSAE
ILTWVEIGEVTGSSNAGSVNGVAYDHVFPIELEQPGGAGVQNLQIGYNNN
QNPFQAAQTFIDAHMLPQRYLSEIADYISQRAGQAAPILGGGAAVASASV
SSAATASTFIGQPPSLPSPPSAARYFPRVGYVVFDAGQLDKISAKIMEFS
KDPALASLPFDEAALSSLVATLQATSRYHANQVKESEMKALLSLLHGWPA
DKIFPLLDLLRMTVLHPSLKGDGLPPTQLAHIISLCEKNPTSAPIAMLTL
RLLANLCRHSGTRRLLVAAPPSPSSCLLPALSLAAQHAASTNKSVRGAAA
ALLLNLSVLLTSEIDFPSSSFPPPPSAVTALVNPGVSSLLSGEGGKEEDV
ALKAAVALGTLLSTSSTKSAARAAVLPIKAQVEGLGALGGKVRECLEDLI
KVF*

mRNA from alignment at chr27:46479..54317-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO27G00160.1 ID=NO27G00160.1|Name=NO27G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=7839bp|location=Sequence derived from alignment at chr27:46479..54317- (Nannochloropsis oceanica)
ATGGATTCTAGCATGCCCTTTGAGCTGGCGGCGGAGCTGCGGGGCCACGA
CGGAAGTGTGCGCACGATGTGCGTGCTGGGGGGAGAGGAAGGAGGGCATC
AGCAGCTCATCTCGGGAGGGGATGACGGGACTATAAAGCGGTAAAGAAAT
AAAAAAAGGGACGGGAAGAAGGCAGAGAGCGGTGAGAGACGTATAGGGGC
AAAGGAATGAATATGCCTGGCATTTTGTGTGTCTTGCGTCCGCTGCTTTT
CAAACGCCAATCGGCAAAGGCGGAAATCACGGTCACTTTCATTCCCCTCT
CACATATTCATGCTTCTTCTTCCCACTTCCTTGCCTCCTCCCTCTCCCTC
TCTTTTTAATCTCCCTCCTCCTTAACTGTAATAGATGGCTGCGTGCAGAG
ACTGGGTCACACGTCGCCTTTGAGTGTATCGGTGCGTCTCGGAGGGAGGG
AGAGGGGGAGAGATGGAGGGAAGGTTTGATTCGTCCACTGTCGTTCGATC
GTACGGCATGGATAGGCAATGGATGCAAAGGGATCAGTGATAGAAGAATA
GAAAGATGGGGCGGGAAGCGGTGAAGGTGGGTGACTTGGGACGTAGGCTC
GGCCCCTAATTCTTCCCCTGTCTGTACTTACATGCCCTCCCTCCCTCCCT
CCCTCTTTCATCCCCTGCTTGTTCTATTATTCAATGTAGAAACAATCACT
GAAGCCGAGCACTGGCTGCTGGCCCTCTTGCCCTTGCCTCCGGGAATGAT
AACGGTGAGGGTTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTAGGTCGG
TCGGTCCAAGGGCGGTCCGCCAGCCATTTTTTCTGTGGCTGCTCATACCC
TCCCTTCCTCCCTCCCTTCCTTCCTTCTCTCCCTTCCTTCCTTCCTATCC
TCCCTCCCTCCCTCAGGAGGCGCCCCAAGGAGGGTTCATCGCGGCCTCGC
AGGACAAGATGATCCGCGTATACGATGTGGAGGTGAGGGAGGGAGGGAGG
GATGGAGGGAGGGAGGGTCTGGACACCTGTCAGGGATAAGCGGGAGTACA
TCCATCGCCTCCACCCTCCCCCTCCCTCCCTCCCTCCCCCCCTCCCGTCT
ACCTCAGGGCAAGCGCCTCCGCCTCCTTGTGGGGCACCAACACGGCGTCA
TCTCCCTCTCGTGGACGGCGGGGGGGCAGCTCGTGAGTGGGAGCTGGGAT
GGCACGGCCAAGGTAGGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCTCTCCCTCCCTCCCTTGGGATCAAAATGCAGAAAAAAGCGAAATC
GATGTCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTGAGGTGTGGGA
CGTGGAGACCGGCCAAGTCCTTCTCACTCTCGGGGAGCACGAGAACGGAG
TCTGCGTCCTGGGCTTGCCCAATGGGGATATCGCCACGGGCAGTACCGGC
AGGGAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGCGTTGA
TAAGTGCACGTCATTCCTTCCTATACCCCAGCTATCTCGTACCCTTACAT
CTTTTCCCCATCCCTCCCTCCCTCCCTCCCTCCCTCTCCGCCTACTTAGG
AAGGAGGCAAGATCGTGGATGTCCAGATTCGGCTCTGGCGGGAGGGGAAG
GTCTTCAAGACAGCGAGGGAGCACACAGGTAGGTTGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGGAAGGTGGACAAGGCTGCGAGG
GAGCAAAGATGTAGAGAGGGAGGGAGGGAGGGAGGGAGGTTGGTAGGGAG
GGAGGGGAAGGTCTTCAAGACAGCGAGGGAGCACACAGGTAGGTTGGGAG
GGAGGGAGGGAGGGAGGGGAAGGTGGACAAGGCTGCGAGGGAGCAAAGAT
GTAGAGAGGGAGGGGGGAGGGGGGAAGAAGAGGGAGAGAGGGAGAGGGAA
GACCGACAAGCGACTGTATTTTCTCTGTATATCCAACCCTCTCTCCCCCC
TCCCTCCCTCCCTCCCTCCCCCAGGCCCTGTCCGGTCCTTGGCCCTGTGG
CCGGACGTGGGCTTCCTCTCCACCAGCAACGACGGCTCGGTAAGGAGGGA
GGGAGGGAGGGGGGGAGGGGGGATGGGGCGTTACAGCATTTTATGGCTGA
GTTTCGCTATCGTCTCTTGTATACGCGTACTGATCCTCTCCTCCCTCCCT
CCCTCCCTCCCTGCCTAGGTCCGTCTGTACTCCTTCGACGGCGAGCCTCT
TTCGTCCGTCCAAGCTCCTCCTGGACCCGACGGGTCCCCTCCCTTTGTCT
ACAGGGCAGGTACCTCCCTCCCTCCCTCCCTCCCTCACTCCCTTCCTTCC
TTCTTTCCCTTCCTTCCCTCCCTCCCTTTTGCACTCTCCTAACTTCCTGC
CTCCCTCCCTGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGTCTCTTC
CTTGCTATCTACCCCATTCCTTTTCGCTGTTTGTCGTCCCTCCTTCATTT
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGCCCCCTTCTCAGGT
CCCTGTGGAGTGATGGAAGTGGCCGCCGCGGGGGAAGACGGCGCAGTCAA
TGTCTGGAGGGGCGAGGTGAGGGAGGGAGGGAGGGGGGGAGGGAGGGAGG
GAGGGAGGGACGGGAGGAGGGCAGATATGATACATTACGACACTGCCTTC
CTGACCGTCTTGTCCTCGCCCTCCTTCCCTCCCTCCCTCCCTCCCTCAGA
CGCTGATCCAGCGCATCCAACACCCTCGGGGCTTGTGGACCGTCCTCTCC
TCCGGGTCGCCTACGGGAGGTGAGGGAGGGAGAGAAGGCACGCCTCTTTT
CGATGGCCCCGGCATGGAAGAAGTCTCCTTTTTCTCGCCTATACCCTCCC
TCCCTCCCTCCCTCCCTCCGGCCCTCCCTCCTTCCCTAGACACAGAGCTA
GTGACAGGTTGTCATGATGGAGTCATCCGCGTCTTTTCCCGGGACCCGAC
CAAGCAGGGGCCGGAGGAGGTGAGGGAGGGAGGGAGGGAGGGAGGAAGGG
AGGGAGGGGTGGGAAGGAAAGGAAGTAAGAAAGGGATGAGTAGGACCTGA
GGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGGTGGGAAGGAAAGGA
AGTAAGAAAGGGATGAGTAGGACCTGAGGGAGGAGGGAGGGAGGGAGGAA
GGGAGGGAGGGGTGGGAAGGAAAGGAAGAGAGAAAGGGATGAGTAGGACC
TGAGGGAGGAGGGAGGGGGAAGGGAGGGAAGAAGGGGAAAGAAGTTGTCG
TGAAACAAATCCGGAATCTCTGGATTCATGTATGCCCTCCCTCCCTCCCT
CCCTCCCTTCCGCCCTCCAGCTGCGGGCTGCTTTCGTCCAGGCAGGGAAA
GAAGCGCTCGAGAAGCAAGCCAAAGGAGGGGCTGGTGGGCCCACTGCCGA
GGAGGTGGCTTCCCTCCCTCCATGGGAAGATCGACAGTCGCAGCACGGGA
AGAAGGATGGTAGGTGAATTATCATGTCTCATGTCTTCTTCCTCCCCTCC
CTCTCCCTCTCCTTCCCTCTTTCCCTTTGCCCTCTTTGATAAATTTCTCC
TCCAAGGAAGAAGCCTAGACGATCCCAACTTGAGCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCAGGCTCCATCCAGCTCTTCCGCAAAGGGGGCACAGCC
ATCGCCGCTTCTTGGTCCGCCGAAATTCTTACATGGGTCGAGATCGGGGA
AGTGACGGGGAGCAGCAACGCCGGTAGTGTCAATGGTACGAGCCTGCCTG
CCCTCCCTCCCTCCCTCCAGGCGTGGCGTACGATGACGATGCCCTTCTTG
AGCACTTTCATGATGGGGGTACACCTCCCTTCTCTCCTTTCCCTCCCTCC
TTCCCTCCCTCCCTCTTTCCCTCCCTCCCTCCCTCTCTGACCCTCCCTCT
CTGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGAGTGGCGTAC
GATCACGTTTTCCCCATCGAGCTCGAGCAGCCGGGAGGCGCGGGGGTCCA
GAACCTGCAGGTATGGCAGGAAGGGAGGAAAGGAGGGAGGGAGGGAGGGA
GGGAGGGAGCGAAGGAGGGAAGGGCGGTGAATGAGCCACTTGAGAGACAC
TCTGTCAACGGCAGTCGGCCGCTTATTCCGTGTCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCGCCCACAGATAGGGTACAACAA
CAACCAAAACCCTTTTCAAGCCGCGCAGACCTTCATCGTAAGCGCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCACCCATTCCTTCTCCTTCCCTCCCTCCCTCCCTCAGGACGCCCA
CATGCTCCCTCAACGCTACCTGTCTGAGATTGCCGACTACATTTCCCAAA
GAGCGGGACAAGCCGCGCCCATCCTCGGTATCTTTTTCCTTCCCTCCCTC
CCTCCCTTTCTCCCTCCCTCCCTCCCTCCCTCCTTCGCTCGCCAGCAGAC
CGAGCACGCTGCCCTCCCCCCCCGTCGTTGACGCGTCCTCCCCTCCTTCC
TCCCTCCCTGCCTCCTTCAGGCGGCGGTGCGGCCGTTGCGTCAGCCTCTG
TTTCTTCTGCTGCTACTGCCTCCACCTTCATCGGACAGCCCCCCTCCCTC
CCTTCCCCTCCTTCGGCCGCCCGTTACTTTCCCCGGGTGCGCCGACCCTC
CCTCCCTCCCTCCCTCCCTCCTTTCTCCCCTTCCTTCCTTACTCTCTGCC
TCTTGGTCCTCCCTCCCTCTTTGTTCTCCATGCTCTTGTACTCTAAGAAC
GTACCTAAAGCCTACCACTTAACATGCACACAGGTTGGATATGTCGTTTT
CGACGCCGGCCAGCTCGACAAGATCTCGGCGAAGGTACGTCTACCCCTCC
CTCCCCCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTTCCCTCCCTCTCTCGATCTTCTTCCATC
CCTTGCTCACCGCCTGCTCCCCCTTTCTCTCTTTCCTGCGTGGGCTGTGT
TTCTCGTACCTCCTCCCACCCAAGAGGACGAACCCTAAGCCTTCTTGCTG
CCCTCTCTCTCTCCGTTTCTCGTGCACAGACGCGACGTTTTTCCAGTTAC
AAAAAGGGCTTACGTCTCCCAAGTCCTCGCACCCACCCCTCTCTTCCTCC
CGCCGTGCCCTCTCCCTCATCACCCATCCCTCCCTCCCTCCCTCCCTCCA
GATCATGGAGTTCTCAAAGGACCCGGCCCTCGCTTCCCTCCCCTTCGACG
AAGCCGCACTGTCCTCCCTCGTTGCCACGCTGCAGGCCACGAGCCGATAC
CACGCCAACCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGATTG
ACCTTCCCCTGCCTTTGTTTCTTCCTTTCAATGAAGGCGGCAGCGCGCCC
GGAGGAAGGCGGACAGGCAGGGAGGGAGGGAGGGAGAGAGGGAGGGAAGG
AAAGTAAAGATCGGATCGAAAACATATCCTCGTCGCTTGAATACACATCT
CTCCATCCCCCTTCCCTCCCTCTTTTCGTTCTCTCTAGGTGAAAGAGAGT
GAAATGAAAGCTCTTCTCTCTCTTCTTCACGGCTGGCCAGCCGACAAGGT
AAGGGAAGGAAGGGAGGGAGGAAGCGAGGGAGGGAGGGAGGGAAGGCGAG
GTGATTTCAGGCGAATCAAATCGACCTTGATCCCAAACCGTTTATAAGCG
TATTTCCTGCTTCCTCCCTACCCCTCCCTACTAACCCTAACCCTAACCCT
ATCGCTCTCTTCCCTCTCTCTACCCACACGGCAGATCTTTCCACTGCTAG
ACCTGCTGCGGATGACGGTCCTCCACCCCTCCCTCAAGGGCGACGGCCTC
CCGCCCACGCAACTCGCGCAGTAGGGCGGAAGGGAGTGCGGGAGGGAGGG
CGGGAAGGAGGGGGGAGGGAGGGGGGGTTGAAGCACATGTGCTGCTTGAT
CCGAAATAGACAATCGTCACTCCTCGAATGCTTCATCGCTCATCCCTCTG
TGAGAAGTGTCCGACCACGGCTCCCATTGCCATGCTCACCCCTCCTGTCC
TCCCTCCCTCCCTCTCTCCCTCCCTTCTCCCCCCTCCCTCAGCATCATCT
CCCTCTGTGAGAAGAATCCGACCTCGGCTCCCATTGCTATGCTCACGCTG
CGGCTGCTGGCCAACCTCTGTCGCCACAGTGGCACTCGGTATGAGGGAGG
GAGGGAGGGAGGAAGGGAGGGAGGGAGAGAATAGCTAATGCTTTGATCGC
CATCATCATGTTTGTGTCTCGCTCCTTGACCCCCATCCGCTCCTTTTCCT
CCCTCCCTCTCCACGTATTCCTCCTCCTACCCCTCCTTTTTGTCTCCGCC
CTCTCCCACACTCGTCCTCCCACCCCTCCCCCATTCGCACAGCAGGCTTC
TCGTCGCCGCCCCTCCCTCCCCCTCGTCCTGCCTCCTCCCAGCCCTGTCT
CTGGCCGCCCAGCACGCGGCCTCCACCAACAAGAGCGTGAGGGTGAGGAG
GGAGGGAGGAGGGGAGGGAGGGAGAAAGACGAAATGTGTCAGACTGATCG
ATTCCGCTTTGATGCTTCCGACAATGCTTCTCTCCTCCCCCCCTCCCTCC
CTCCCTCCTTTCCTCCTTTCTCGCCGTAGGGTGCGGCGGCCGCCCTACTC
CTCAACCTCTCCGTCCTCCTCACGAGCGAGATCGACTTTCCCTCTTCCTC
CTTCCCTCCCCCTCCATCGGCAGTCACTGCCCTGGTCAACCCGGGTATGA
TCTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAT
CCTTTTTCCTACTTTTTGGGCCGCCATATCCATCTCTCTTCTTACCGCCG
ACCTTCACAATACTCCTATTCTCTCCCTCCCTCCCTCCCTCCCTCCCTTC
CTCCCTCCTCACTTCGCACAGGCGTTTCGTCCCTGCTGTCCGGGGAGGGA
GGGAAGGAGGAAGACGTCGCCCTCAAGGCGGCTGTGGCGCTAGGTACACT
TTTGAGGTACGCTTCATTCCTCCTTCCCTCCTTCCCTCTACCTCCGCACC
CACCTACCTACCTCCTTTCTCCTCTTCCCTCGATATTTCCTATCAGTCTC
AACGTTCGCTCCCTTCTACTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCTCTCCCTCCCTCCAGCACC
TCTAGCACAAAGTCAGCCGCCAGAGCCGCGGTGTTGCCGATCAAGGCCCA
AGTGGAAGGTAGGGGTCGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGAATGAAAGGAAGGTGACGCCAAACAGAAATTCACATATACATATAGA
TAGATACATACATATATACACATGAGTGTGTATATACACATATGTGTGTG
TATGTATATATGTAAATATACACATAAACATATGTGTGTGCGTAGAGTAT
TACACACAGATACGAATTTTCACATACATACACACATACATACACACACA
CACATATATATAACTGTATATATATATATATATGTATATGTATATGTATA
TGTATATGTATTACTACATGATTACAGGGCTGGGAGCATTGGGAGGGAAA
GTGAGAGAGTGTCTCGAGGATTTGATCAAAGTTTTCTAG

Coding sequence (CDS) from alignment at chr27:46479..54317-

>NO27G00160.1 ID=NO27G00160.1|Name=NO27G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=2412bp|location=Sequence derived from alignment at chr27:46479..54317- (Nannochloropsis oceanica)
ATGGATTCTAGCATGCCCTTTGAGCTGGCGGCGGAGCTGCGGGGCCACGA
CGGAAGTGTGCGCACGATGTGCGTGCTGGGGGGAGAGGAAGGAGGGCATC
AGCAGCTCATCTCGGGAGGGGATGACGGGACTATAAAGCGATGGCTGCGT
GCAGAGACTGGGTCACACGTCGCCTTTGAGTGTATCGAAACAATCACTGA
AGCCGAGCACTGGCTGCTGGCCCTCTTGCCCTTGCCTCCGGGAATGATAA
CGGAGGCGCCCCAAGGAGGGTTCATCGCGGCCTCGCAGGACAAGATGATC
CGCGTATACGATGTGGAGGGCAAGCGCCTCCGCCTCCTTGTGGGGCACCA
ACACGGCGTCATCTCCCTCTCGTGGACGGCGGGGGGGCAGCTCGTGAGTG
GGAGCTGGGATGGCACGGCCAAGGTGTGGGACGTGGAGACCGGCCAAGTC
CTTCTCACTCTCGGGGAGCACGAGAACGGAGTCTGCGTCCTGGGCTTGCC
CAATGGGGATATCGCCACGGGCAGTACCGGCAGGGAGGAAGGAGGCAAGA
TCGTGGATGTCCAGATTCGGCTCTGGCGGGAGGGGAAGGTCTTCAAGACA
GCGAGGGAGCACACAGGCCCTGTCCGGTCCTTGGCCCTGTGGCCGGACGT
GGGCTTCCTCTCCACCAGCAACGACGGCTCGGTCCGTCTGTACTCCTTCG
ACGGCGAGCCTCTTTCGTCCGTCCAAGCTCCTCCTGGACCCGACGGGTCC
CCTCCCTTTGTCTACAGGGCAGCCCCCTTCTCAGGTCCCTGTGGAGTGAT
GGAAGTGGCCGCCGCGGGGGAAGACGGCGCAGTCAATGTCTGGAGGGGCG
AGACGCTGATCCAGCGCATCCAACACCCTCGGGGCTTGTGGACCGTCCTC
TCCTCCGGGTCGCCTACGGGAGACACAGAGCTAGTGACAGGTTGTCATGA
TGGAGTCATCCGCGTCTTTTCCCGGGACCCGACCAAGCAGGGGCCGGAGG
AGCTGCGGGCTGCTTTCGTCCAGGCAGGGAAAGAAGCGCTCGAGAAGCAA
GCCAAAGGAGGGGCTGGTGGGCCCACTGCCGAGGAGGTGGCTTCCCTCCC
TCCATGGGAAGATCGACAGTCGCAGCACGGGAAGAAGGATGGCTCCATCC
AGCTCTTCCGCAAAGGGGGCACAGCCATCGCCGCTTCTTGGTCCGCCGAA
ATTCTTACATGGGTCGAGATCGGGGAAGTGACGGGGAGCAGCAACGCCGG
TAGTGTCAATGGAGTGGCGTACGATCACGTTTTCCCCATCGAGCTCGAGC
AGCCGGGAGGCGCGGGGGTCCAGAACCTGCAGATAGGGTACAACAACAAC
CAAAACCCTTTTCAAGCCGCGCAGACCTTCATCGACGCCCACATGCTCCC
TCAACGCTACCTGTCTGAGATTGCCGACTACATTTCCCAAAGAGCGGGAC
AAGCCGCGCCCATCCTCGGCGGCGGTGCGGCCGTTGCGTCAGCCTCTGTT
TCTTCTGCTGCTACTGCCTCCACCTTCATCGGACAGCCCCCCTCCCTCCC
TTCCCCTCCTTCGGCCGCCCGTTACTTTCCCCGGGTTGGATATGTCGTTT
TCGACGCCGGCCAGCTCGACAAGATCTCGGCGAAGATCATGGAGTTCTCA
AAGGACCCGGCCCTCGCTTCCCTCCCCTTCGACGAAGCCGCACTGTCCTC
CCTCGTTGCCACGCTGCAGGCCACGAGCCGATACCACGCCAACCAGGTGA
AAGAGAGTGAAATGAAAGCTCTTCTCTCTCTTCTTCACGGCTGGCCAGCC
GACAAGATCTTTCCACTGCTAGACCTGCTGCGGATGACGGTCCTCCACCC
CTCCCTCAAGGGCGACGGCCTCCCGCCCACGCAACTCGCGCACATCATCT
CCCTCTGTGAGAAGAATCCGACCTCGGCTCCCATTGCTATGCTCACGCTG
CGGCTGCTGGCCAACCTCTGTCGCCACAGTGGCACTCGCAGGCTTCTCGT
CGCCGCCCCTCCCTCCCCCTCGTCCTGCCTCCTCCCAGCCCTGTCTCTGG
CCGCCCAGCACGCGGCCTCCACCAACAAGAGCGTGAGGGGTGCGGCGGCC
GCCCTACTCCTCAACCTCTCCGTCCTCCTCACGAGCGAGATCGACTTTCC
CTCTTCCTCCTTCCCTCCCCCTCCATCGGCAGTCACTGCCCTGGTCAACC
CGGGCGTTTCGTCCCTGCTGTCCGGGGAGGGAGGGAAGGAGGAAGACGTC
GCCCTCAAGGCGGCTGTGGCGCTAGGTACACTTTTGAGCACCTCTAGCAC
AAAGTCAGCCGCCAGAGCCGCGGTGTTGCCGATCAAGGCCCAAGTGGAAG
GGCTGGGAGCATTGGGAGGGAAAGTGAGAGAGTGTCTCGAGGATTTGATC
AAAGTTTTCTAG

Synonyms

Publications