NO27G00090.1, NO27G00090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G00090.1
Unique NameNO27G00090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr27:26932..28666 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:26932..28666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G00090.1 vs.
Match: EWM20414.1 (heme oxygenase [Nannochloropsis gaditana])

HSP 1 Score: 312.4 bits (799), Expect = 1.500e-81
Identity = 171/273 (62.64%), Postives = 210/273 (76.92%), Query Frame = 0 
Query:   20 AKGAEDETLNDLPLSIAMRKATRKIHRESDALVNLKLVYAFTYPALYAEAIGLFYPIYRSLESLILASPSPSLRPFAALLVQFKLQRTAAFEVDIAYHSRGEWIEKTNDPSCPPALLTYLARLEACAKDDPDLLVVYAYHMYMALLSGGQILKRLTTKFLLPKKGKAGTGVQQDGKEKGLALYTFETEQTEEIKAALRAAVDAVEGKGGVRNTERRQAFLNESIRLFHMNNEVVRSFEPSRAGRCKLRVVICLVLLSLLLFLVLLGRGLRWCF 293
            A GA D   +++PLSIAMRKATRKIHRESDALVN KLVYAFTYP+LYA+AIGLFYPIYR LESL+++S SPSL+PFA LL Q+KL+RT AFE D+ +HSRG    +  D   P A+ +YL RLE+CA  DP+LL VY YHMYMALLSGGQIL+RLTT+ LLPK     T V     + GLALY+FE  +T+EIK A+RA VD +E  G V N++RRQAFL+ESIRLFHMNNEVVRSF PSR GR KL V+ CL+L++++L + ++G  +   F
Sbjct:   64 ASGAPDGH-DEVPLSIAMRKATRKIHRESDALVNFKLVYAFTYPSLYADAIGLFYPIYRKLESLVMSSGSPSLQPFATLLRQYKLERTRAFESDMDFHSRGG--TEKEDDEIPEAVKSYLERLESCAATDPELLAVYVYHMYMALLSGGQILRRLTTQCLLPK-----TPVTNKDPDAGLALYSFEGGKTQEIKEAIRATVDRMEKTGVVFNSQRRQAFLDESIRLFHMNNEVVRSFRPSRKGRRKLVVLGCLLLVAVILVVTMVGGAMSCAF 328
The following BLAST results are available for this feature:
BLAST of NO27G00090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20414.11.500e-8162.64heme oxygenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00090NO27G00090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G00090.1NO27G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G00090.1.cds1NO27G00090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00090.1.cds2NO27G00090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00090.1.cds3NO27G00090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00090.1.cds4NO27G00090.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G00090.1.cds5NO27G00090.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G00090.1 ID=NO27G00090.1|Name=NO27G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
ATGACACCACTACCACCAATACGGGACGCCATGACACCACCACCACTACC
AAATGATGCGAAGGGTGCCGAGGACGAGACGCTCAACGACCTCCCCCTCT
CCATTGCCATGAGAAAGGCCACGCGCAAGATCCACCGGGAGAGCGATGCC
CTCGTCAATTTAAAGCTTGTCTATGCATTCACTTACCCTGCTCTGTATGC
TGAAGCCATTGGACTCTTCTACCCCATCTACCGCTCCCTCGAGTCCCTTA
TCCTCGCCTCCCCATCTCCCTCCCTCCGTCCCTTCGCCGCCCTCCTTGTC
CAGTTCAAGCTCCAACGCACGGCTGCCTTTGAGGTGGACATTGCATACCA
CTCTCGCGGAGAATGGATTGAGAAGACAAACGACCCCTCCTGCCCTCCTG
CCCTTCTGACCTACCTTGCTCGCTTGGAAGCCTGCGCGAAGGACGACCCA
GACCTGCTTGTCGTCTATGCCTACCACATGTACATGGCTTTGCTCAGTGG
TGGCCAAATCCTCAAGCGTCTTACCACCAAGTTTCTCCTGCCCAAAAAAG
GGAAAGCAGGCACAGGTGTACAGCAGGATGGAAAGGAGAAGGGATTGGCG
CTCTACACGTTTGAGACAGAACAAACGGAGGAGATCAAGGCGGCTTTACG
GGCGGCGGTTGACGCGGTGGAGGGCAAGGGCGGCGTGAGAAACACAGAGC
GCCGGCAAGCGTTTTTGAACGAGAGCATCCGCCTCTTCCACATGAACAAC
GAGGTCGTCCGTTCCTTCGAGCCTAGTCGGGCAGGTCGCTGCAAGCTACG
TGTGGTGATTTGCCTGGTGCTATTGTCCCTGCTGTTGTTTCTCGTGCTGC
TGGGGAGGGGATTAAGGTGGTGCTTCTCTTTCTCTCCGCTGTAA
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protein sequence of NO27G00090.1

>NO27G00090.1-protein ID=NO27G00090.1-protein|Name=NO27G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MTPLPPIRDAMTPPPLPNDAKGAEDETLNDLPLSIAMRKATRKIHRESDA
LVNLKLVYAFTYPALYAEAIGLFYPIYRSLESLILASPSPSLRPFAALLV
QFKLQRTAAFEVDIAYHSRGEWIEKTNDPSCPPALLTYLARLEACAKDDP
DLLVVYAYHMYMALLSGGQILKRLTTKFLLPKKGKAGTGVQQDGKEKGLA
LYTFETEQTEEIKAALRAAVDAVEGKGGVRNTERRQAFLNESIRLFHMNN
EVVRSFEPSRAGRCKLRVVICLVLLSLLLFLVLLGRGLRWCFSFSPL*
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mRNA from alignment at chr27:26932..28666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G00090.1 ID=NO27G00090.1|Name=NO27G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1735bp|location=Sequence derived from alignment at chr27:26932..28666+ (Nannochloropsis oceanica)
ATGACACCACTACCACCAATACGGGACGCCATGACACCACCACCACTACC
AAATGATGCGAAGGGTGCCGAGGACGAGACGCTCAACGACCTCCCCCTCT
CCATTGCCATGAGAAAGGCCACGCGGTGAGAAGGAAGATGTGGGTAAAAC
GATAGAAAAAGTAGGAAAATGGAGGACTGTGCTCTAAACGAAAAGCATAC
ATCCTAAACGTGAAGCAGGGTGTGTGAATCCTGCTGCCCTTGTCCCGTAC
ATCCGTCCTTCCATCCATCTCATACGTTCCCTCTGTTCTCCCCCTTCCCT
GACCCCCTCATTCCGCAGCAAGATCCACCGGGAGAGCGATGCCCTCGTCA
ATTTAAAGCTTGTCTATGCATTCACTTACCCTGCTCTGTATGCTGAAGCC
ATTGGACTCTTCTACCCCATGTAAGAAAGGGAGGCTGCGGAGAATGAAGG
GAGGAGAAAGAAAGGCTGGTAAGGGAGGAGGGCATCCCTGGCCGATGCAT
ATTCCGATATAAGGAGGCAAAAGCTTGCATGCCTCCTTACTCTCATATAC
GCCTGCATCATTCTCTCCATCCACACCATTCGCTTTCTCCTCTCTACCCC
ACAACAGCTACCGCTCCCTCGAGTCCCTTATCCTCGCCTCCCCATCTCCC
TCCCTCCGTCCCTTCGCCGCCCTCCTTGTCCAGTTCAAGCTCCAACGCAC
GGCTGCCTTTGAGGTGGACATTGCATACCACTCTCGCGGAGAATGGATTG
AGAAGACAAACGACCCCTCCTGCCCTCCTGCCCTTCTGACCTACCTTGCT
CGCTTGGAAGCCTGCGCGAAGGACGACCCAGACCTGCTTGTCGTCTATGC
CTACCACATGTACATGGCTTTGCTCAGTGGTACGTCCCATGGTTGGAATG
GCTTCTTCTTCTTCGATCTATCTCTTCCGCCTTGGTGCTGCCTTCTCTGG
CCGGTGCCAGCATTCTAACCAAGTCCCTCGTGCTCGAATGCAGGAGCCCC
CTCCTTCCCTCTCTCCCCCTCTGTCAACCTGCCTCGCATTCCTTCACCGT
ATTTACTTACTCACAAGCTATGTGTCGGTCGCTACTCTTCCAGCCCCCGA
AATTATTTAAATCGTTTCACCTATACTTACCATCTTTCCTACGCCCCCGC
CCTCCTTCCTATCCCTCCCTCTCACCCCTCCCTCCTCCCTTCTGGCAGGT
GGCCAAATCCTCAAGCGTCTTACCACCAAGTTTCTCCTGCCCAAAAAAGG
GAAAGCAGGCACAGGTGTACAGCAGGATGGAAAGGAGAAGGGATTGGCGC
TCTACACGTTTGAGACAGAACAAACGGAGGAGATCAAGGCGGCTTTACGG
GCGGCGGTTGACGCGGTGGAGGGCAAGGGCGGCGTGAGAAACACAGAGGT
ATGCGCCTGCTTGGATTTATATGCCCCAAGATCATTCAGTATTACTTAGA
TGAGACCTTCATTACCCCCAGCCTCTGAATATAAAGAAAAACATTCATTA
TATACACCATACCGTTTCGCCCTCCTCTCCTTCCTCACAGCGCCGGCAAG
CGTTTTTGAACGAGAGCATCCGCCTCTTCCACATGAACAACGAGGTCGTC
CGTTCCTTCGAGCCTAGTCGGGCAGGTCGCTGCAAGCTACGTGTGGTGAT
TTGCCTGGTGCTATTGTCCCTGCTGTTGTTTCTCGTGCTGCTGGGGAGGG
GATTAAGGTGGTGCTTCTCTTTCTCTCCGCTGTAA
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Coding sequence (CDS) from alignment at chr27:26932..28666+

>NO27G00090.1 ID=NO27G00090.1|Name=NO27G00090.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr27:26932..28666+ (Nannochloropsis oceanica)
ATGACACCACTACCACCAATACGGGACGCCATGACACCACCACCACTACC
AAATGATGCGAAGGGTGCCGAGGACGAGACGCTCAACGACCTCCCCCTCT
CCATTGCCATGAGAAAGGCCACGCGCAAGATCCACCGGGAGAGCGATGCC
CTCGTCAATTTAAAGCTTGTCTATGCATTCACTTACCCTGCTCTGTATGC
TGAAGCCATTGGACTCTTCTACCCCATCTACCGCTCCCTCGAGTCCCTTA
TCCTCGCCTCCCCATCTCCCTCCCTCCGTCCCTTCGCCGCCCTCCTTGTC
CAGTTCAAGCTCCAACGCACGGCTGCCTTTGAGGTGGACATTGCATACCA
CTCTCGCGGAGAATGGATTGAGAAGACAAACGACCCCTCCTGCCCTCCTG
CCCTTCTGACCTACCTTGCTCGCTTGGAAGCCTGCGCGAAGGACGACCCA
GACCTGCTTGTCGTCTATGCCTACCACATGTACATGGCTTTGCTCAGTGG
TGGCCAAATCCTCAAGCGTCTTACCACCAAGTTTCTCCTGCCCAAAAAAG
GGAAAGCAGGCACAGGTGTACAGCAGGATGGAAAGGAGAAGGGATTGGCG
CTCTACACGTTTGAGACAGAACAAACGGAGGAGATCAAGGCGGCTTTACG
GGCGGCGGTTGACGCGGTGGAGGGCAAGGGCGGCGTGAGAAACACAGAGC
GCCGGCAAGCGTTTTTGAACGAGAGCATCCGCCTCTTCCACATGAACAAC
GAGGTCGTCCGTTCCTTCGAGCCTAGTCGGGCAGGTCGCTGCAAGCTACG
TGTGGTGATTTGCCTGGTGCTATTGTCCCTGCTGTTGTTTCTCGTGCTGC
TGGGGAGGGGATTAAGGTGGTGCTTCTCTTTCTCTCCGCTGTAA
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Synonyms
Publications