NO26G01500.1, NO26G01500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G01500.1
Unique NameNO26G01500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length720
Alignment locationchr26:489873..491116 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:489873..491116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G01500.1 vs.
Match: XP_002908301.1 (RNA-binding protein PNO1-like protein [Phytophthora infestans T30-4]; EEY61384.1 RNA-binding protein PNO1-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 295.0 bits (754), Expect = 2.000e-76
Identity = 139/213 (65.26%), Postives = 175/213 (82.16%), Query Frame = 0 
Query:   30 ALESSSSAELAP---LTRPQYKPLPANEMEGGRAAYRRIRVPPNRLTPLRQQWEAVMQPLIEHLRLQIRYNAKNRCVELKTSPHTTDLSAIQKGADFLQAFMMGFELQDAVALLRLEDLFIDSFMVTDVKLLSGDHLSRAIGRVAGQDGKTRFAIENATRTRIVVADQQVHILGSFANIKLARDAVCALVMGAPPGKVYNQLRQTSRRLAERF 240
            A ES+   ++ P   + RP +  L A +  GG+  +RR+RVP +R TPL+  W  +M+P++EHL+LQIR N K RC+ELK SPHTTD  A+QK ADF+QA+MMGFE+QDAVALLRLEDLFID+F V DVK+L GDHLSRAIGRVAGQDGKT++A+ENATRTRIV+ADQ++HILGSFANIKLARDA+C+L+MGAPPGKVYN++R  + R+ ERF
Sbjct:   22 AQESAEQMDVGPEDDMVRPNFPALSAQQQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLKLQIRMNTKTRCIELKNSPHTTDSGALQKAADFVQAYMMGFEVQDAVALLRLEDLFIDTFEVNDVKMLKGDHLSRAIGRVAGQDGKTKYAVENATRTRIVLADQKIHILGSFANIKLARDAICSLIMGAPPGKVYNKMRNVASRMNERF 234
The following BLAST results are available for this feature:
BLAST of NO26G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002908301.12.000e-7665.26RNA-binding protein PNO1-like protein [Phytophthor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G01500NO26G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G01500.1NO26G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G01500.1.cds1NO26G01500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01500.1.cds2NO26G01500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01500.1.cds3NO26G01500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G01500.1 ID=NO26G01500.1|Name=NO26G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
ATGCCCAACGACGATGCGGGGATCATGGTGGTGGAGGCAGGGCAAGTAGA
GGAGCGGATGGAGCAGGACCAGGAGGGCAACAATCCGGCATTGGAGAGCA
GCAGCAGCGCGGAATTGGCTCCTTTGACACGGCCACAGTATAAGCCTTTG
CCAGCGAATGAGATGGAGGGTGGTCGTGCCGCCTACCGCCGCATCCGCGT
CCCGCCCAACCGTCTCACCCCCCTCCGCCAGCAGTGGGAAGCAGTCATGC
AGCCTCTGATTGAGCACCTGCGGTTACAAATTCGCTATAATGCCAAGAAC
AGGTGTGTGGAGTTGAAGACATCTCCACACACGACGGACCTGTCCGCCAT
TCAGAAGGGGGCCGATTTTCTTCAAGCCTTTATGATGGGCTTCGAGCTGC
AGGACGCCGTGGCCCTCCTCCGCTTGGAGGACCTGTTCATCGACTCCTTC
ATGGTAACGGACGTGAAGCTCTTGTCGGGAGACCACCTGTCTCGCGCAAT
TGGCCGAGTGGCGGGGCAGGACGGCAAGACGCGATTCGCCATCGAGAACG
CCACGAGGACTCGGATTGTGGTGGCCGACCAGCAGGTGCACATCTTGGGC
AGTTTCGCCAACATCAAGCTGGCGAGAGACGCGGTGTGTGCGCTGGTGAT
GGGGGCGCCGCCTGGGAAGGTATACAATCAGTTGAGGCAGACGAGCCGAC
GGCTGGCGGAGAGGTTTTAA
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protein sequence of NO26G01500.1

>NO26G01500.1-protein ID=NO26G01500.1-protein|Name=NO26G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MPNDDAGIMVVEAGQVEERMEQDQEGNNPALESSSSAELAPLTRPQYKPL
PANEMEGGRAAYRRIRVPPNRLTPLRQQWEAVMQPLIEHLRLQIRYNAKN
RCVELKTSPHTTDLSAIQKGADFLQAFMMGFELQDAVALLRLEDLFIDSF
MVTDVKLLSGDHLSRAIGRVAGQDGKTRFAIENATRTRIVVADQQVHILG
SFANIKLARDAVCALVMGAPPGKVYNQLRQTSRRLAERF*
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mRNA from alignment at chr26:489873..491116+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G01500.1 ID=NO26G01500.1|Name=NO26G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1244bp|location=Sequence derived from alignment at chr26:489873..491116+ (Nannochloropsis oceanica)
ATGCCCAACGACGATGCGGGGATCATGGTGGTGGAGGCAGGGCAAGTAGA
GGAGCGGATGGAGCAGGACCAGGAGGGCAACAATCCGGCATTGGAGAGCA
GCAGCAGCGCGGAATTGGCTCCTTTGACACGGCCACAGTATAAGCCTTTG
CCAGCGAATGAGATGGAGGTGAGTTTTTGTGGGAGAATGGCGGGAGGGCA
GGGAGGAAAAGATAAGCGGATGGGTGGGAATGTGGGAGGGGAGGTAGAGA
GTTTGCTTGCAAGGGACTGAAAACTAAGCCTCCCTCAAGCACAAGCACGC
AGCGGCAGTGCAAGCACTGCGGGTGTTATTGTCTGCGTTTGCCTGTGTGC
ACGGTACAAATCCACCCTCTTGCTAGATGTGTCCTCAAATGATGAGCCAA
CCTAAAAATCACCATCTTTCGATTGAGCGCCCTACACAAGCGCCTTGAAA
CGAAAATTTAGCAGCATACAATGCTCCTGATGCGCGTACACATCTATACC
TAACGATCACTCTACACACGCGCCCCATCCCCCTCCCCACGATTCATCCT
CACTACTCCCCCTATCCTTTCTCCCTCCCTCCCTTCCTCTCAGGGTGGTC
GTGCCGCCTACCGCCGCATCCGCGTCCCGCCCAACCGTCTCACCCCCCTC
CGCCAGCAGTGGGAAGCAGTCATGCAGCCTCTGATTGAGCACCTGCGGTT
ACAAATTCGCTATAATGCCAAGAACAGGTATTACCAGGCCCCCCTCCCTC
ATTCCTCCCCTCCCCCCCACTGGCACTCACTGCCTCCCTTCTCCCTGTCC
CCTCCCTCCCTTCACCCACATCGCAGGTGTGTGGAGTTGAAGACATCTCC
ACACACGACGGACCTGTCCGCCATTCAGAAGGGGGCCGATTTTCTTCAAG
CCTTTATGATGGGCTTCGAGCTGCAGGACGCCGTGGCCCTCCTCCGCTTG
GAGGACCTGTTCATCGACTCCTTCATGGTAACGGACGTGAAGCTCTTGTC
GGGAGACCACCTGTCTCGCGCAATTGGCCGAGTGGCGGGGCAGGACGGCA
AGACGCGATTCGCCATCGAGAACGCCACGAGGACTCGGATTGTGGTGGCC
GACCAGCAGGTGCACATCTTGGGCAGTTTCGCCAACATCAAGCTGGCGAG
AGACGCGGTGTGTGCGCTGGTGATGGGGGCGCCGCCTGGGAAGGTATACA
ATCAGTTGAGGCAGACGAGCCGACGGCTGGCGGAGAGGTTTTAA
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Coding sequence (CDS) from alignment at chr26:489873..491116+

>NO26G01500.1 ID=NO26G01500.1|Name=NO26G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr26:489873..491116+ (Nannochloropsis oceanica)
ATGCCCAACGACGATGCGGGGATCATGGTGGTGGAGGCAGGGCAAGTAGA
GGAGCGGATGGAGCAGGACCAGGAGGGCAACAATCCGGCATTGGAGAGCA
GCAGCAGCGCGGAATTGGCTCCTTTGACACGGCCACAGTATAAGCCTTTG
CCAGCGAATGAGATGGAGGGTGGTCGTGCCGCCTACCGCCGCATCCGCGT
CCCGCCCAACCGTCTCACCCCCCTCCGCCAGCAGTGGGAAGCAGTCATGC
AGCCTCTGATTGAGCACCTGCGGTTACAAATTCGCTATAATGCCAAGAAC
AGGTGTGTGGAGTTGAAGACATCTCCACACACGACGGACCTGTCCGCCAT
TCAGAAGGGGGCCGATTTTCTTCAAGCCTTTATGATGGGCTTCGAGCTGC
AGGACGCCGTGGCCCTCCTCCGCTTGGAGGACCTGTTCATCGACTCCTTC
ATGGTAACGGACGTGAAGCTCTTGTCGGGAGACCACCTGTCTCGCGCAAT
TGGCCGAGTGGCGGGGCAGGACGGCAAGACGCGATTCGCCATCGAGAACG
CCACGAGGACTCGGATTGTGGTGGCCGACCAGCAGGTGCACATCTTGGGC
AGTTTCGCCAACATCAAGCTGGCGAGAGACGCGGTGTGTGCGCTGGTGAT
GGGGGCGCCGCCTGGGAAGGTATACAATCAGTTGAGGCAGACGAGCCGAC
GGCTGGCGGAGAGGTTTTAA
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Synonyms
Publications