NO26G01340.1, NO26G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G01340.1
Unique NameNO26G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1293
Alignment locationchr26:430841..432282 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:430841..432282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G01340.1 vs.
Match: EWM23155.1 (folate-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 410.6 bits (1054), Expect = 6.000e-111
Identity = 236/444 (53.15%), Postives = 303/444 (68.24%), Query Frame = 0 
Query:    9 LVLLALCLDSTVGFLQPHQPPHSNNRGAQRKCGSILG-------------------MLSVDEAMNMKEACGQA-QGVLLDLTAGEWGLLSVTGEDRLRFLHNQLTNSFTDLKPGQVLESSYTSSTGRTIDLVTAYVLQDEVLLLSSPSRHEQLLGAFNKYIFPLDRVEVQRRDLSGLFIWLGPASAAQTVLPQLLGNDDTLAPLPGPSQCQYCSSSSFSMVLAEGTGVALSGYTILALRARAASIPAGDVAAHVGRGGMEEWQALRVLQGRPYPDKELTMDVTPLEAGLWHTVDLNKGCYLGQETLARQANNKGERQKLYAVRGKGLKERKRVIDAEGNRAGVITSCMND---MGLAYIRKTVLNPTTDMLFVDGEAQRIQVLDIPYATRAATFNKMTTPKEAAAAAAAVNTTAADVAAEAERKAKKLEEMKRRLEAFQAKSRQ 430
            LV L + L   VGF+ P  P H    G       + G                    +S  EA++++E    + +GV LDLT+  WGLLSV+GEDRLRFLHNQLTNSF + + G V+ESSYTSS GR IDLVTAYVL+DEVLLLSSP RH  +  +F+KYIFPLDRV+V +++L G FI++GP  AA T L  LL +      +P P Q   C +    +V+AEG+G+AL G T+L +   ++ + A   +A V  GG +EW+ALR+LQGRP+P+KELT++VTPLEAGLWHTVD  KGCYLGQETLA+QANNKGERQ+L+AVRGKGL+E++R++D+ G R+GV+TSC+ D    GLAYIRKTV +PT   LF +G  + +QV DIPYATR AT  K  +        AA NT+AAD A EA RKAKKLEEMK+RLE FQ K+++
Sbjct:    6 LVALGIRLSLAVGFVYP--PTHGGAFGRYSPSEEMPGNVKYRAERARYPINTFISSQISSHEALHLQEMSRNSPEGVFLDLTSCGWGLLSVSGEDRLRFLHNQLTNSFANAQVGDVIESSYTSSVGRAIDLVTAYVLEDEVLLLSSPPRHAHVFESFHKYIFPLDRVQVHKKELQGFFIYMGP-EAALTKLSNLLEHK-----VP-PPQAHRCHTLPSGLVVAEGSGLALPGLTMLDVSG-SSGVAAAVSSAGVRLGGGKEWEALRILQGRPFPEKELTLEVTPLEAGLWHTVDPEKGCYLGQETLAKQANNKGERQRLFAVRGKGLEEKQRILDSAGGRSGVVTSCLGDEGRAGLAYIRKTVAHPTRASLFNEGGTEPLQVSDIPYATREATTKKQGSTVTQEIGQAAENTSAADKAVEAGRKAKKLEEMKKRLEEFQRKNKK 439
The following BLAST results are available for this feature:
BLAST of NO26G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23155.16.000e-11153.15folate-binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G01340NO26G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G01340.1NO26G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G01340.1.cds1NO26G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01340.1.cds2NO26G01340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01340.1.cds3NO26G01340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G01340.1 ID=NO26G01340.1|Name=NO26G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
ATGACACTACTGCCGATCTTGGGCCTTGTGTTGTTGGCTTTATGCCTCGA
CTCGACCGTCGGCTTTTTGCAGCCTCATCAACCACCCCACAGCAACAACA
GGGGTGCGCAGAGAAAATGTGGCTCCATCTTAGGCATGCTGTCTGTGGAC
GAAGCCATGAACATGAAAGAAGCTTGCGGTCAAGCGCAAGGTGTCTTGCT
TGACCTCACTGCCGGCGAGTGGGGCTTACTTTCCGTGACGGGGGAGGACC
GCTTACGCTTTTTGCACAACCAGCTCACCAACAGCTTCACGGATCTCAAA
CCTGGGCAAGTGTTGGAGTCTTCTTACACTTCTTCAACCGGTCGGACCAT
AGATCTTGTGACGGCCTATGTGCTGCAGGACGAGGTGCTGCTTCTGTCCT
CTCCGTCCCGGCATGAGCAACTCTTGGGAGCGTTCAACAAGTACATCTTC
CCTTTGGACAGGGTGGAGGTTCAAAGGAGGGACCTCTCAGGGCTCTTCAT
TTGGCTGGGCCCTGCTTCTGCGGCCCAAACCGTGCTCCCCCAGCTCCTCG
GTAACGACGACACCCTCGCTCCTCTCCCTGGTCCCAGCCAATGCCAGTAC
TGCTCTTCCTCTTCGTTTAGCATGGTACTGGCAGAGGGGACGGGTGTGGC
TTTGTCGGGATACACCATCCTCGCCCTGCGCGCTCGGGCCGCTAGCATAC
CAGCAGGCGATGTTGCTGCTCATGTCGGCAGGGGTGGTATGGAGGAGTGG
CAAGCCCTGCGTGTCTTACAAGGTAGGCCGTATCCAGACAAGGAACTCAC
GATGGACGTGACCCCTTTAGAGGCGGGGTTGTGGCACACTGTGGACTTAA
ATAAAGGGTGCTACCTGGGTCAGGAAACGCTAGCGAGGCAGGCGAACAAC
AAAGGGGAACGCCAGAAACTCTATGCCGTCCGAGGGAAGGGGCTAAAGGA
ACGAAAACGCGTCATAGATGCGGAGGGAAACAGGGCGGGGGTCATTACTT
CCTGCATGAATGACATGGGGCTTGCGTATATTCGCAAGACAGTGCTGAAC
CCAACCACAGACATGCTATTCGTCGACGGCGAAGCACAGAGAATTCAGGT
TTTAGACATACCCTATGCTACGCGGGCCGCCACCTTTAATAAAATGACGA
CCCCAAAAGAGGCAGCAGCAGCTGCTGCAGCTGTTAATACTACCGCGGCG
GACGTGGCGGCGGAGGCGGAGCGGAAGGCTAAGAAGCTCGAAGAGATGAA
GCGAAGATTGGAGGCGTTCCAAGCAAAAAGTCGACAGACATAA
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protein sequence of NO26G01340.1

>NO26G01340.1-protein ID=NO26G01340.1-protein|Name=NO26G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MTLLPILGLVLLALCLDSTVGFLQPHQPPHSNNRGAQRKCGSILGMLSVD
EAMNMKEACGQAQGVLLDLTAGEWGLLSVTGEDRLRFLHNQLTNSFTDLK
PGQVLESSYTSSTGRTIDLVTAYVLQDEVLLLSSPSRHEQLLGAFNKYIF
PLDRVEVQRRDLSGLFIWLGPASAAQTVLPQLLGNDDTLAPLPGPSQCQY
CSSSSFSMVLAEGTGVALSGYTILALRARAASIPAGDVAAHVGRGGMEEW
QALRVLQGRPYPDKELTMDVTPLEAGLWHTVDLNKGCYLGQETLARQANN
KGERQKLYAVRGKGLKERKRVIDAEGNRAGVITSCMNDMGLAYIRKTVLN
PTTDMLFVDGEAQRIQVLDIPYATRAATFNKMTTPKEAAAAAAAVNTTAA
DVAAEAERKAKKLEEMKRRLEAFQAKSRQT*
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mRNA from alignment at chr26:430841..432282-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G01340.1 ID=NO26G01340.1|Name=NO26G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1442bp|location=Sequence derived from alignment at chr26:430841..432282- (Nannochloropsis oceanica)
ATGACACTACTGCCGATCTTGGGCCTTGTGTTGTTGGCTTTATGCCTCGA
CTCGACCGTCGGCTTTTTGCAGCCTCATCAACCACCCCACAGCAACAACA
GGTGAGACTTCCATTCTTGCACTTGGAGAAGGAAGCTAGGACCAAGACGC
TCATCCCACTATTACACGACCACAGGGGTGCGCAGAGAAAATGTGGCTCC
ATCTTAGGCATGCTGTCTGTGGACGAAGCCATGAACATGAAAGAAGCTTG
CGGTCAAGCGCAAGGTGTCTTGCTTGACCTCACTGCCGGCGAGTGGGGCT
TACTTTCCGTGACGGGGGAGGACCGCTTACGCTTTTTGCACAACCAGCTC
ACCAACAGCTTCACGGATCTCAAACCTGGGCAAGTGTTGGAGTCTTCTTA
CACTTCTTCAACCGGTCGGACCATAGATCTTGTGACGGCCTATGTGCTGC
AGGACGAGGTGCTGCTTCTGTCCTCTCCGTCCCGGCATGAGCAACTCTTG
GGAGCGTTCAACAAGTACATCTTCCCTTTGGACAGGTGAAAAACGCAAAT
ACTGCAGACACGAAGGTCTCCTGGCTATGCATTCTTACATAATATCCAAA
ATACACCCAGGGTGGAGGTTCAAAGGAGGGACCTCTCAGGGCTCTTCATT
TGGCTGGGCCCTGCTTCTGCGGCCCAAACCGTGCTCCCCCAGCTCCTCGG
TAACGACGACACCCTCGCTCCTCTCCCTGGTCCCAGCCAATGCCAGTACT
GCTCTTCCTCTTCGTTTAGCATGGTACTGGCAGAGGGGACGGGTGTGGCT
TTGTCGGGATACACCATCCTCGCCCTGCGCGCTCGGGCCGCTAGCATACC
AGCAGGCGATGTTGCTGCTCATGTCGGCAGGGGTGGTATGGAGGAGTGGC
AAGCCCTGCGTGTCTTACAAGGTAGGCCGTATCCAGACAAGGAACTCACG
ATGGACGTGACCCCTTTAGAGGCGGGGTTGTGGCACACTGTGGACTTAAA
TAAAGGGTGCTACCTGGGTCAGGAAACGCTAGCGAGGCAGGCGAACAACA
AAGGGGAACGCCAGAAACTCTATGCCGTCCGAGGGAAGGGGCTAAAGGAA
CGAAAACGCGTCATAGATGCGGAGGGAAACAGGGCGGGGGTCATTACTTC
CTGCATGAATGACATGGGGCTTGCGTATATTCGCAAGACAGTGCTGAACC
CAACCACAGACATGCTATTCGTCGACGGCGAAGCACAGAGAATTCAGGTT
TTAGACATACCCTATGCTACGCGGGCCGCCACCTTTAATAAAATGACGAC
CCCAAAAGAGGCAGCAGCAGCTGCTGCAGCTGTTAATACTACCGCGGCGG
ACGTGGCGGCGGAGGCGGAGCGGAAGGCTAAGAAGCTCGAAGAGATGAAG
CGAAGATTGGAGGCGTTCCAAGCAAAAAGTCGACAGACATAA
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Coding sequence (CDS) from alignment at chr26:430841..432282-

>NO26G01340.1 ID=NO26G01340.1|Name=NO26G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at chr26:430841..432282- (Nannochloropsis oceanica)
ATGACACTACTGCCGATCTTGGGCCTTGTGTTGTTGGCTTTATGCCTCGA
CTCGACCGTCGGCTTTTTGCAGCCTCATCAACCACCCCACAGCAACAACA
GGGGTGCGCAGAGAAAATGTGGCTCCATCTTAGGCATGCTGTCTGTGGAC
GAAGCCATGAACATGAAAGAAGCTTGCGGTCAAGCGCAAGGTGTCTTGCT
TGACCTCACTGCCGGCGAGTGGGGCTTACTTTCCGTGACGGGGGAGGACC
GCTTACGCTTTTTGCACAACCAGCTCACCAACAGCTTCACGGATCTCAAA
CCTGGGCAAGTGTTGGAGTCTTCTTACACTTCTTCAACCGGTCGGACCAT
AGATCTTGTGACGGCCTATGTGCTGCAGGACGAGGTGCTGCTTCTGTCCT
CTCCGTCCCGGCATGAGCAACTCTTGGGAGCGTTCAACAAGTACATCTTC
CCTTTGGACAGGGTGGAGGTTCAAAGGAGGGACCTCTCAGGGCTCTTCAT
TTGGCTGGGCCCTGCTTCTGCGGCCCAAACCGTGCTCCCCCAGCTCCTCG
GTAACGACGACACCCTCGCTCCTCTCCCTGGTCCCAGCCAATGCCAGTAC
TGCTCTTCCTCTTCGTTTAGCATGGTACTGGCAGAGGGGACGGGTGTGGC
TTTGTCGGGATACACCATCCTCGCCCTGCGCGCTCGGGCCGCTAGCATAC
CAGCAGGCGATGTTGCTGCTCATGTCGGCAGGGGTGGTATGGAGGAGTGG
CAAGCCCTGCGTGTCTTACAAGGTAGGCCGTATCCAGACAAGGAACTCAC
GATGGACGTGACCCCTTTAGAGGCGGGGTTGTGGCACACTGTGGACTTAA
ATAAAGGGTGCTACCTGGGTCAGGAAACGCTAGCGAGGCAGGCGAACAAC
AAAGGGGAACGCCAGAAACTCTATGCCGTCCGAGGGAAGGGGCTAAAGGA
ACGAAAACGCGTCATAGATGCGGAGGGAAACAGGGCGGGGGTCATTACTT
CCTGCATGAATGACATGGGGCTTGCGTATATTCGCAAGACAGTGCTGAAC
CCAACCACAGACATGCTATTCGTCGACGGCGAAGCACAGAGAATTCAGGT
TTTAGACATACCCTATGCTACGCGGGCCGCCACCTTTAATAAAATGACGA
CCCCAAAAGAGGCAGCAGCAGCTGCTGCAGCTGTTAATACTACCGCGGCG
GACGTGGCGGCGGAGGCGGAGCGGAAGGCTAAGAAGCTCGAAGAGATGAA
GCGAAGATTGGAGGCGTTCCAAGCAAAAAGTCGACAGACATAA
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Synonyms
Publications