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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr26 | genome | chr26:383944..386954 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO26G01190.2 vs.
Match: EWM23139.1 (cellulase 2 [Nannochloropsis gaditana]) HSP 1 Score: 613.6 bits (1581), Expect = 4.500e-172 Identity = 277/379 (73.09%), Postives = 322/379 (84.96%), Query Frame = 0
Query: 30 YGFEGDLYVLDGLAAWSIEHFMLFLATHHFNAIRLPFSLEWIARGLDAPLMNIYVVQEDIRKLTQGQVLERIFDAAAAQGIVILLDLHVIQVKEGIKDLWYDNTASPERVIDLWTTMLERFAGRWNLLGIDLKNEPHGIATWGKGHPKTDWNTFVTHAIQTLATRVPFFQGVFFVEGVEGNHWNSKYHSWWGGNLDGVRRYPIATGNEALDKRVVFSPHIYGPEVFSGHTFFRDPRFPENMMGIWNAQFGWIEKTTGRAMVLGEWGGTIAGDSKAAANQQKLAEWLVKACVPDNFWWCLNPATQFNGSLLGKTYQTANENVLRILDFVQPQPTRFHHDIAEGGSLCVVDGAFANTRCTVRLGLNMNSSQAALKAEKEYQ 409
YGFEG+L+VLDGLA WS E FM FLA+H FNA+RLPFSLEW+ARGLD+PL NIYVVQED+R LTQGQV++RIFDAAAAQGI+ILLDLHVI V++GI DLWYD TA V+DLWT +L RFAGRWNLLGIDLKNEPHGIA+WG GHPKTDWN F T +IQTLATRVP F GVFFVEG+E WNS + WWGGNL+GVR+YPI+TG+E LD+RVV+SPHIYGPEVF H +F+D RFP+NM GIW+ QFGWIEK+TGRA+VLGEWGG+I GD KAAANQQKLAEWLV AC+PDNFWWCLNPAT+FNG LL + YQ ++NVL++L +VQP+PT FH I G LCVVDGAFAN RC V++GL +++S AAL AEKE Q
Sbjct: 199 YGFEGELFVLDGLAVWSPERFMSFLASHRFNALRLPFSLEWLARGLDSPLANIYVVQEDMRGLTQGQVMDRIFDAAAAQGILILLDLHVISVEKGITDLWYDETADGALVLDLWTLLLRRFAGRWNLLGIDLKNEPHGIASWGHGHPKTDWNAFATKSIQTLATRVPDFHGVFFVEGIERPRWNSPHAYWWGGNLEGVRKYPISTGSEDLDRRVVYSPHIYGPEVFPRHRYFQDSRFPDNMPGIWDHQFGWIEKSTGRAVVLGEWGGSIVGDRKAAANQQKLAEWLVHACIPDNFWWCLNPATEFNGGLLARDYQAVDKNVLQMLHYVQPKPTTFHGGIGAGDPLCVVDGAFANVRCAVKMGLPISTSMAALMAEKERQ 577
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO26G01190.2 ID=NO26G01190.2|Name=NO26G01190.2|organism=Nannochloropsis oceanica|type=mRNA|length=2916bp
TGTGACGTCGTTGATCTTCTCAAACCGTCCCTACACGCCTGCACCAGCGC
TGGTGCCAGCGTTCCTAGCTTCTTTGAGTCTTGACGGTGCTTTATTGTCT
GCCAAATACTTGAGAAAATCGTGTGCGTTATGATGATAGCATTCCTCAGG
TAGAATTTCCTGTCTTACACCCATGTCGCTCGACGTCCCCACAGCATGCC
CAGGCGGCCTGTGCTTGACATGGCCTTGGGTCTCTTGTGCCTCGCAAGCA
AGACCCATGCGCAGGTACAGTCGGCTGGTTTTGTGCTAGCTAGTGGTTTC
GGCATCAATTCGCATTCCCTTTCGATCGAAAAAGTGCTGGCCACAGAGGA
TATAATCAGCGCGTTGGCAAAGCATTACGTGCGTTTGATTCCACCGCCGC
CCACGCAATCCGCCTATTTGTCCCATGACCTTGAGTTCCAGCAAATCAGT
CTCGACTCTCCTGTATCTGAGGCGACCATCTCTCCAGATTGGTGCGTTGC
GCCTGGGGAGGCGTACAAGTATACCTCGGAGAAGGGGTCTGTCATGCTGA
ACGGGCACCCGCTTTACCTGAAGGGTTTGAATTGGTAAGAGTTTCAGGGG
AGAATGGGATAAAGGAATAAAGGGGATGGGAGAGTGGGAAAGGAGACGAG
GATGGTAGGGCTTGGGAAGGAGGCGAGGACGGGAGGGCGTGTTTGTGTAC
CGGTGCCTGCCTTTGCTGTTTGGTCTGCACCAGGGCTGCTAGGTCCTTAT
TGCACCACTTTCTGCCGAGACAGACGACTCGCAGATGACGTAAAGGAATG
AAAGAAGAATAAAGTTGTAAGGACACACATCTGCATGGATATTTTTTATG
ATACAAAAAAATGTGCTTGGGTGTGAAAAATTGTCCCGTGTTGCTAATTC
CGCTCATGACATCACTATCTGACCTTTCTCACCCTCATCTTTTCAGGTAT
GGCTTCGAAGGCGATTTGTATGTTCTGGACGGGCTGGCCGCGTGGTCGAT
CGAGCACTTCATGCTCTTTCTGGCGACGCACCACTTCAACGCTATACGCC
TGCCCTTTAGTCTGGAGTGGATTGCACGTGGTTTGGATGCACCACTCATG
AATATTTATGTCGTGCAAGAAGATATTCGGAAGCTGACGCAGGGCCAGGT
ACTGGAGCGGATCTTCGACGCAGCAGCCGCTCAGGGCATTGTGATTCTGC
TAGACCTGCATGTGATCCAGGTTAAGGAGGGGATCAAGGACCTTTGGTAC
GACAACACGGCCAGCCCCGAACGCGTCATCGATCTGTGGACCACGATGCT
GGAGCGCTTTGCGGGGCGATGGAATCTATTGGGGATCGACTTAAAGAACG
AGCCCCACGGTATCGCCACCTGGGGCAAGGGCCACCCCAAGACGGACTGG
AACACCTTCGTCACGCACGCCATTCAAACTCTGGCTACGCGCGTGCCTTT
CTTCCAGGGCGTGTTCTTCGTAGAGGGTGTGGAGGGCAACCACTGGAACA
GCAAGTACCATAGCTGGTGGGGAGGGAACTTGGACGGTGTTCGACGCTAT
CCTATCGCCACGGGCAACGAGGCGCTCGACAAACGCGTAGTTTTTTCGCC
GCACATATACGGGCCTGAGGTATTTTCTGGCCACACTTTTTTTCGAGACC
CACGCTTTCCCGAGAACATGATGGGCATCTGGAATGCGCAGTTCGGCTGG
ATCGAGAAGACGACGGGCCGTGCAATGGTGCTGGGCGAGTGGGGTGGTAC
CATCGCGGGGGACAGTAAGGCGGCTGCCAACCAGCAGAAGCTGGCCGAGT
GGCTTGTCAAGGCATGTGTTCCCGACAATTTTTGGTGGTGTCTTAACCCG
GCCACCCAGTTCAATGGAAGCTTGTTGGGCAAGACGTACCAAACGGCAAA
CGAGAACGTGTTGCGCATCCTCGACTTCGTGCAGCCCCAACCCACACGCT
TCCATCACGACATCGCCGAGGGCGGGTCCTTGTGCGTTGTGGACGGCGCC
TTCGCCAATACCCGTTGCACCGTTAGACTGGGCCTGAACATGAACTCGAG
TCAGGCAGCCCTGAAGGCTGAGAAGGAGTATCAGCATAAGTATTTTGGTG
CGGGCTAGGGAAAAAAAGGTAAACAAGGAAGTGTAAATTTGCAGGAAGGG
CAATAAGCGAACAGATCAAGTGCGTGAAAGAGGTAAAAAGGGTAGAAGAA
GTTCCTTCAGTGCTTTGAAAGTACCATTTGATTGGTACTTTCTTGCATGT
ATGAGTAAAATATGTTGTAAAAATGTTGAAATTCTTCAAATTGCAAAGAT
TTAAGTAAAAATTGTAGTAGCGTGAGCACTTGATTGCATTTAGTTTACTT
AACCCACTTTCGCTTTCCTCTCCTCTCGTTCTTCTCCCATCACACACAAG
CTCTTACGCTCTCCCTTCTCGGTCTTCAGTTTTCGGTTGTCACCTCGTTG
ATTTTTGGTCAAGAGGGAGGATCTGATTATGTGTAATGTAATGCACTTTG
TCAGAGCAATACGTCTTTTGATAAAAACCTGGTGTGCGTCTCTTGTCTTG
TTTCTTTTGAGTGTACCCTCGGGGGGGGGCTTTTTATGGCGGTATCTCCA
AAAGTCTCTTCCAAAAAGTATGAGTGCCGTCGTCGTCCCGATCCCTTTTT
TTTTTAGTCGTGACCGAAATTGGGCACATCGCATGTTCGATTAGGTTGTA
AAGCAGGACCTTGCATGAAAATTCTTGTTTCCCGGAGTCGTTGCATCCCG
TCGGCCGCTCCAAGAAAGCAATTATATATACTAGCGGGTACGCCCGTCCT
GTGGGCAGGCAGGGTGGTGATTTGTTGTGAGTCGTAGGAAAAGAGAGGGG
TGGGGAAAGGAGGAAGTAAAGGGGGGGCATGTAAGCCAGGTGCACACCTG
GGGTAGTGACTTGAGT back to topprotein sequence of NO26G01190.2 >NO26G01190.2-protein ID=NO26G01190.2-protein|Name=NO26G01190.2|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MCLGVKNCPVLLIPLMTSLSDLSHPHLFRYGFEGDLYVLDGLAAWSIEHF
MLFLATHHFNAIRLPFSLEWIARGLDAPLMNIYVVQEDIRKLTQGQVLER
IFDAAAAQGIVILLDLHVIQVKEGIKDLWYDNTASPERVIDLWTTMLERF
AGRWNLLGIDLKNEPHGIATWGKGHPKTDWNTFVTHAIQTLATRVPFFQG
VFFVEGVEGNHWNSKYHSWWGGNLDGVRRYPIATGNEALDKRVVFSPHIY
GPEVFSGHTFFRDPRFPENMMGIWNAQFGWIEKTTGRAMVLGEWGGTIAG
DSKAAANQQKLAEWLVKACVPDNFWWCLNPATQFNGSLLGKTYQTANENV
LRILDFVQPQPTRFHHDIAEGGSLCVVDGAFANTRCTVRLGLNMNSSQAA
LKAEKEYQHKYFGAG* back to topmRNA from alignment at chr26:383944..386954- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO26G01190.2 ID=NO26G01190.2|Name=NO26G01190.2|organism=Nannochloropsis oceanica|type=mRNA|length=3011bp|location=Sequence derived from alignment at chr26:383944..386954- (Nannochloropsis oceanica)
TGTGACGTCGTTGATCTTCTCAAACCGTCCCTACACGCCTGCACCAGCGC
TGGTGCCAGCGTTCCTAGCTTCTTTGAGTCTTGACGGTGCTTTATTGTCT
GCCAAATACTTGAGAAAATCGTGTGCGTTATGATGATAGCATTCCTCAGG
TAGAATTTCCTGTCTTACACCCATGTCGCTCGACGTCCCCACAGCATGCC
CAGGCGGCCTGTGCTTGACATGGCCTTGGGTCTCTTGTGCCTCGCAAGCA
AGACCCATGCGCAGGTACAGTCGGCTGGTTTTGTGCTAGCTAGTGGTTTC
GGCATCAATTCGCATTCCCTTTCGATCGAAAAAGTGCTGGCCACAGAGGA
TATAATCAGCGCGTTGGCAAAGCATTACGTGCGTTTGATTCCACCGCCGC
CCACGCAATCCGCCTATTTGTCCCATGACCTTGAGTTCCAGCAAATCAGT
CTCGACTCTCCTGTATCTGAGGCGACCATCTCTCCAGATTGGTGCGTTGC
GCCTGGGGAGGCGTACAAGTATACCTCGGAGAAGGGGTCTGTCATGCTGA
ACGGGCACCCGCTTTACCTGAAGGGTTTGAATTGGTAAGAGTTTCAGGGG
AGAATGGGATAAAGGAATAAAGGGGATGGGAGAGTGGGAAAGGAGACGAG
GATGGTAGGGCTTGGGAAGGAGGCGAGGACGGGAGGGCGTGTTTGTGTAC
CGGTGCCTGCCTTTGCTGTTTGGTCTGCACCAGGGCTGCTAGGTCCTTAT
TGCACCACTTTCTGCCGAGACAGACGACTCGCAGATGACGTAAAGGAATG
AAAGAAGAATAAAGTTGTAAGGACACACATCTGCATGGATATTTTTTATG
ATACAAAAAAATGTGCTTGGGTGTGAAAAATTGTCCCGTGTTGCTAATTC
CGCTCATGACATCACTATCTGACCTTTCTCACCCTCATCTTTTCAGGTAT
GGCTTCGAAGGCGATTTGTATGTTCTGGACGGGCTGGCCGCGTGGTCGAT
CGAGCACTTCATGCTCTTTCTGGCGACGCACCACTTCAACGCTATACGCC
TGCCCTTTAGTCTGGAGTGGATTGCACGTGGTTTGGATGCACCACTCATG
AATATTTATGTCGTGCAAGAAGATATTCGGAAGCTGACGCAGGGCCAGGT
ACTGGAGCGGATCTTCGACGCAGCAGCCGCTCAGGGCATTGTGATTCTGC
TAGACCTGCATGTGATCCAGGTTAAGGAGGGGATCAAGGACCTTTGGTAC
GACAACACGGCCAGCCCCGAACGCGTCATCGATCTGTGGACCACGATGCT
GGAGCGCTTTGCGGGGCGATGGAATCTATTGGTAAGAGAGGAGTGGAGAT
AGGCGATGGGGTGAAGGAGAACCTCTGACAGTTACTCCCTCTCACGCGCT
TATCCTCTTTACCATCCCTTACGCAGGGGATCGACTTAAAGAACGAGCCC
CACGGTATCGCCACCTGGGGCAAGGGCCACCCCAAGACGGACTGGAACAC
CTTCGTCACGCACGCCATTCAAACTCTGGCTACGCGCGTGCCTTTCTTCC
AGGGCGTGTTCTTCGTAGAGGGTGTGGAGGGCAACCACTGGAACAGCAAG
TACCATAGCTGGTGGGGAGGGAACTTGGACGGTGTTCGACGCTATCCTAT
CGCCACGGGCAACGAGGCGCTCGACAAACGCGTAGTTTTTTCGCCGCACA
TATACGGGCCTGAGGTATTTTCTGGCCACACTTTTTTTCGAGACCCACGC
TTTCCCGAGAACATGATGGGCATCTGGAATGCGCAGTTCGGCTGGATCGA
GAAGACGACGGGCCGTGCAATGGTGCTGGGCGAGTGGGGTGGTACCATCG
CGGGGGACAGTAAGGCGGCTGCCAACCAGCAGAAGCTGGCCGAGTGGCTT
GTCAAGGCATGTGTTCCCGACAATTTTTGGTGGTGTCTTAACCCGGCCAC
CCAGTTCAATGGAAGCTTGTTGGGCAAGACGTACCAAACGGCAAACGAGA
ACGTGTTGCGCATCCTCGACTTCGTGCAGCCCCAACCCACACGCTTCCAT
CACGACATCGCCGAGGGCGGGTCCTTGTGCGTTGTGGACGGCGCCTTCGC
CAATACCCGTTGCACCGTTAGACTGGGCCTGAACATGAACTCGAGTCAGG
CAGCCCTGAAGGCTGAGAAGGAGTATCAGCATAAGTATTTTGGTGCGGGC
TAGGGAAAAAAAGGTAAACAAGGAAGTGTAAATTTGCAGGAAGGGCAATA
AGCGAACAGATCAAGTGCGTGAAAGAGGTAAAAAGGGTAGAAGAAGTTCC
TTCAGTGCTTTGAAAGTACCATTTGATTGGTACTTTCTTGCATGTATGAG
TAAAATATGTTGTAAAAATGTTGAAATTCTTCAAATTGCAAAGATTTAAG
TAAAAATTGTAGTAGCGTGAGCACTTGATTGCATTTAGTTTACTTAACCC
ACTTTCGCTTTCCTCTCCTCTCGTTCTTCTCCCATCACACACAAGCTCTT
ACGCTCTCCCTTCTCGGTCTTCAGTTTTCGGTTGTCACCTCGTTGATTTT
TGGTCAAGAGGGAGGATCTGATTATGTGTAATGTAATGCACTTTGTCAGA
GCAATACGTCTTTTGATAAAAACCTGGTGTGCGTCTCTTGTCTTGTTTCT
TTTGAGTGTACCCTCGGGGGGGGGCTTTTTATGGCGGTATCTCCAAAAGT
CTCTTCCAAAAAGTATGAGTGCCGTCGTCGTCCCGATCCCTTTTTTTTTT
AGTCGTGACCGAAATTGGGCACATCGCATGTTCGATTAGGTTGTAAAGCA
GGACCTTGCATGAAAATTCTTGTTTCCCGGAGTCGTTGCATCCCGTCGGC
CGCTCCAAGAAAGCAATTATATATACTAGCGGGTACGCCCGTCCTGTGGG
CAGGCAGGGTGGTGATTTGTTGTGAGTCGTAGGAAAAGAGAGGGGTGGGG
AAAGGAGGAAGTAAAGGGGGGGCATGTAAGCCAGGTGCACACCTGGGGTA
GTGACTTGAGT back to topCoding sequence (CDS) from alignment at chr26:383944..386954- >NO26G01190.2 ID=NO26G01190.2|Name=NO26G01190.2|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at chr26:383944..386954- (Nannochloropsis oceanica)
ATGTGCTTGGGTGTGAAAAATTGTCCCGTGTTGCTAATTCCGCTCATGAC
ATCACTATCTGACCTTTCTCACCCTCATCTTTTCAGGTATGGCTTCGAAG
GCGATTTGTATGTTCTGGACGGGCTGGCCGCGTGGTCGATCGAGCACTTC
ATGCTCTTTCTGGCGACGCACCACTTCAACGCTATACGCCTGCCCTTTAG
TCTGGAGTGGATTGCACGTGGTTTGGATGCACCACTCATGAATATTTATG
TCGTGCAAGAAGATATTCGGAAGCTGACGCAGGGCCAGGTACTGGAGCGG
ATCTTCGACGCAGCAGCCGCTCAGGGCATTGTGATTCTGCTAGACCTGCA
TGTGATCCAGGTTAAGGAGGGGATCAAGGACCTTTGGTACGACAACACGG
CCAGCCCCGAACGCGTCATCGATCTGTGGACCACGATGCTGGAGCGCTTT
GCGGGGCGATGGAATCTATTGGGGATCGACTTAAAGAACGAGCCCCACGG
TATCGCCACCTGGGGCAAGGGCCACCCCAAGACGGACTGGAACACCTTCG
TCACGCACGCCATTCAAACTCTGGCTACGCGCGTGCCTTTCTTCCAGGGC
GTGTTCTTCGTAGAGGGTGTGGAGGGCAACCACTGGAACAGCAAGTACCA
TAGCTGGTGGGGAGGGAACTTGGACGGTGTTCGACGCTATCCTATCGCCA
CGGGCAACGAGGCGCTCGACAAACGCGTAGTTTTTTCGCCGCACATATAC
GGGCCTGAGGTATTTTCTGGCCACACTTTTTTTCGAGACCCACGCTTTCC
CGAGAACATGATGGGCATCTGGAATGCGCAGTTCGGCTGGATCGAGAAGA
CGACGGGCCGTGCAATGGTGCTGGGCGAGTGGGGTGGTACCATCGCGGGG
GACAGTAAGGCGGCTGCCAACCAGCAGAAGCTGGCCGAGTGGCTTGTCAA
GGCATGTGTTCCCGACAATTTTTGGTGGTGTCTTAACCCGGCCACCCAGT
TCAATGGAAGCTTGTTGGGCAAGACGTACCAAACGGCAAACGAGAACGTG
TTGCGCATCCTCGACTTCGTGCAGCCCCAACCCACACGCTTCCATCACGA
CATCGCCGAGGGCGGGTCCTTGTGCGTTGTGGACGGCGCCTTCGCCAATA
CCCGTTGCACCGTTAGACTGGGCCTGAACATGAACTCGAGTCAGGCAGCC
CTGAAGGCTGAGAAGGAGTATCAGCATAAGTATTTTGGTGCGGGCTAG back to top
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