NO26G00770.1, NO26G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00770.1
Unique NameNO26G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length291
Alignment locationchr26:261600..262084 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:261600..262084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO26G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00770NO26G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00770.1NO26G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00770.1.cds1NO26G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00770.1.cds2NO26G00770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00770.1 ID=NO26G00770.1|Name=NO26G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=291bp
ATGGTGCAGCGACGTCTAGGCCTACGCACGGCTTTGTGCTGTTGCTTGGT
GGCCGGAGCGATACATCAGAGCATGGGAGCAGGCATAAGAATGCGCACAT
CAACCGCTGCCTTTGTACCATCTATACGATCATACCCCTCCTCCCGCCCC
CCTCCTCCTCCTCCTCCTCCTCTTCTTCTCAATCAAGAAGAGGGGAAAGA
AGACCTCTCATGTCATCCTCCACCGTCGTCGCTAGCCCTCCCTCCACCTC
CACCACATCCACCATCAACAGGAGCAGCAGCTCCTCACTAA
back to top

protein sequence of NO26G00770.1

>NO26G00770.1-protein ID=NO26G00770.1-protein|Name=NO26G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MVQRRLGLRTALCCCLVAGAIHQSMGAGIRMRTSTAAFVPSIRSYPSSRP
PPPPPPPLLLNQEEGKEDLSCHPPPSSLALPPPPPHPPSTGAAAPH*
back to top

mRNA from alignment at chr26:261600..262084+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00770.1 ID=NO26G00770.1|Name=NO26G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=485bp|location=Sequence derived from alignment at chr26:261600..262084+ (Nannochloropsis oceanica)
ATGGTGCAGCGACGTCTAGGCCTACGCACGGCTTTGTGCTGTTGCTTGGT
GGCCGGAGCGATACATCAGAGCATGGGTACGTTTGGTGTAAGATTTCGCA
TCGATTGTGACGATGGGACGTCCAGGATCGAACAGAGTAGTATCTGCAGG
AAAGGCAGTGTGCGAATCATCATCCTCTGTAGCTACTTTCACTTGGCCTC
ATGCATCCACAATCCACTCACCTCTCCGTCCTTCCGTCCCTCCGTCCCTC
TACCTCTCTTATTTTCGCAGGAGCAGGCATAAGAATGCGCACATCAACCG
CTGCCTTTGTACCATCTATACGATCATACCCCTCCTCCCGCCCCCCTCCT
CCTCCTCCTCCTCCTCTTCTTCTCAATCAAGAAGAGGGGAAAGAAGACCT
CTCATGTCATCCTCCACCGTCGTCGCTAGCCCTCCCTCCACCTCCACCAC
ATCCACCATCAACAGGAGCAGCAGCTCCTCACTAA
back to top

Coding sequence (CDS) from alignment at chr26:261600..262084+

>NO26G00770.1 ID=NO26G00770.1|Name=NO26G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=291bp|location=Sequence derived from alignment at chr26:261600..262084+ (Nannochloropsis oceanica)
ATGGTGCAGCGACGTCTAGGCCTACGCACGGCTTTGTGCTGTTGCTTGGT
GGCCGGAGCGATACATCAGAGCATGGGAGCAGGCATAAGAATGCGCACAT
CAACCGCTGCCTTTGTACCATCTATACGATCATACCCCTCCTCCCGCCCC
CCTCCTCCTCCTCCTCCTCCTCTTCTTCTCAATCAAGAAGAGGGGAAAGA
AGACCTCTCATGTCATCCTCCACCGTCGTCGCTAGCCCTCCCTCCACCTC
CACCACATCCACCATCAACAGGAGCAGCAGCTCCTCACTAA
back to top
Synonyms
Publications