NO26G00650.1, NO26G00650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00650.1
Unique NameNO26G00650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1893
Alignment locationchr26:227323..230515 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:227323..230515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00650.1 vs.
Match: CBJ28624.1 (oxidoreductase, NAD-binding, myo-inositol 2-dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 509.2 bits (1310), Expect = 1.100e-140
Identity = 247/366 (67.49%), Postives = 289/366 (78.96%), Query Frame = 0 
Query:    6 TAAARRSVSSLSSSLLLKRNASTLKVGVIGAGRIGRVHLETLASVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLNGDEVINHPDVEAVWICSPSQFHADQIKKCAAAGKHVFCEKPIATDLKGTIEAIKVAEDAGIKLMTAFQRRFDPSFARLHKAIADGAVGDPISAILQSRDPSPPPFSYVKGGGGLFKDMAIHDLDIARWLMGARGKNEVVSVYATGHCFIDPEIKQLEGSNPSEAIDTAFIQLTFENGGNVTINVCRKATYGYDQRVEFFGKEGTLMHDNLYPNNVHLWNGKSTGRIDLPHNFFMSRYAEAYKNETISFCKTLQEGSEPSPSGNDGKMALILAMACDKSFKEKRPVKIAEV 372
            T A R   ++  +   +     +L VG+IGAGRIG+VHL+TLASVPGV+PVI+SDVVEPVLK VT +YGVP YTL G EVIN PDVEAVWICSPSQFHADQIK  A AGKH+FCEKPIATDL GTIEA++VA+D G+KLMTAFQRRFDPSF+RL   I  G VG P+SA+LQSRDP+ PPF YVKGGGGLFKDMAIHDLDIARWLMG+ G NE V VYATG C +D  I +L+ SNPSEAIDTA I + FE+G   TI VCRKATYGYDQRVEFFG +G + H+N +P+ V  W G S  + DLPH FFM+RYA+AYKNET +FCK L+EG + +PSG DG  AL +AMACDKS KE RPV ++E+
Sbjct:    4 TVARRMGNTASRAGRGVASQTRSLNVGIIGAGRIGQVHLDTLASVPGVKPVIISDVVEPVLKVVTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVAKDCGVKLMTAFQRRFDPSFSRLQAMIEAGEVGTPVSAVLQSRDPAAPPFDYVKGGGGLFKDMAIHDLDIARWLMGSCGTNEPVRVYATGACNVDKSILELKDSNPSEAIDTANILIEFESGSTATIQVCRKATYGYDQRVEFFGTDGLVKHENHFPSAVQKWTGTSVQQADLPHAFFMTRYADAYKNETRAFCKILEEGGDVTPSGEDGLAALKMAMACDKSLKEGRPVNLSEI 369
The following BLAST results are available for this feature:
BLAST of NO26G00650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ28624.11.100e-14067.49oxidoreductase, NAD-binding, myo-inositol 2-dehydr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00650NO26G00650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00650.1NO26G00650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00650.1.cds1NO26G00650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00650.1.cds2NO26G00650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00650.1.cds3NO26G00650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00650.1.cds4NO26G00650.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00650.1.cds5NO26G00650.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00650.1.cds6NO26G00650.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00650.1.cds7NO26G00650.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00650.1.cds8NO26G00650.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00650.1 ID=NO26G00650.1|Name=NO26G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1893bp
CAACAACAGCCCTGGGAGCTTTAGATCGGGACGTGCCCCGGGGGGTTGAA
GCCCACGAGCAGAAGGAATGTGGGTTGTCCTGATTCACTCTCTTTTGATT
TAATGCTTTCGTTATGGTGCCGGAGATCACTTGGCTTTTCCCACCACGCA
ACACGTCCCAAGTCGACAACACAGGAGGCCTTGAAGCCACACACCGCCCT
AGCGCGTCCCGTAGATCTTTACGCTGGGACTAGATACAGCTTCTTGTCCT
TCCTCATTCTGGCCGCTGCCCTAGGCACGACCCCGGTTCAGCCTCCACTC
ATCCCTCACTAGGGGATGGAGACAGGATGCCATGTTATGTTGCTTTCCTA
ACTGAGCAACCGCGCGTTCAGTCAAACAAACCAGGTCACCATCGTTGCAG
TGCAGGTGTCGAGACCCGTGCTCCTGCACTCACTCGAAGTTCCTGCTCGT
GCCGCATCTTTTCTTTCCTTCTGTATGAAGAAACCGCAGCGAGAGCTATA
GCAGCCGCAGTAGCAAGAGCAGCATTAGTAGCAGAAGGACTATGCGCTGT
CGAAGCTCAATGTTTTGACCTACCATCTTCTCATCCCCTCCTCCTTCCCT
CCCTTCCTCCCCTCCGACTCCCCCACCGACAGACCCACCCCAGAAAAGCA
ACCCCTCACCATGGCTGCCACCCTGACCGCCGCCGCCCGCCGCAGCGTCT
CCTCCCTCTCCTCCTCCCTCCTGCTCAAGCGCAATGCCTCCACCCTCAAG
GTTGGTGTCATCGGCGCAGGCCGCATTGGCCGTGTCCATTTGGAGACGCT
TGCCTCCGTCCCAGGAGTGCAGCCCGTCATCCTCTCCGATGTGGTGGAGC
CGGTTCTGAAGGAGGTGACGGCCCAGTACGGCGTCCCCAACTATACCTTA
AACGGTGATGAGGTCATCAACCACCCGGACGTCGAGGCCGTATGGATCTG
CTCCCCTTCCCAGTTCCACGCCGATCAGATCAAGAAATGCGCGGCGGCAG
GCAAGCACGTCTTTTGCGAGAAGCCCATTGCCACTGACCTCAAGGGTACG
ATCGAGGCTATCAAGGTGGCGGAGGACGCCGGCATCAAGCTCATGACCGC
CTTCCAACGTCGTTTCGACCCATCCTTCGCCCGTCTCCACAAGGCCATTG
CCGACGGCGCCGTCGGAGACCCCATCAGTGCCATCCTCCAATCGCGTGAT
CCCTCCCCCCCTCCCTTCTCCTACGTCAAGGGAGGAGGAGGGCTGTTCAA
GGACATGGCCATCCACGACTTGGACATTGCCAGGTGGCTCATGGGCGCCC
GAGGGAAGAATGAAGTCGTCTCCGTGTACGCAACGGGCCACTGTTTCATC
GACCCCGAAATCAAGCAGCTTGAGGGCAGCAACCCGAGCGAGGCCATCGA
CACGGCCTTCATCCAGCTCACCTTCGAGAACGGGGGCAACGTCACCATCA
ATGTGTGCCGCAAGGCCACCTACGGCTATGACCAGCGCGTTGAGTTTTTC
GGCAAGGAGGGCACGCTCATGCACGACAATCTCTACCCTAACAACGTCCA
CCTCTGGAACGGCAAGTCCACTGGCCGCATCGATCTGCCCCACAACTTTT
TCATGTCCCGGTACGCCGAGGCCTACAAGAACGAGACGATCTCCTTCTGC
AAGACCCTGCAGGAGGGTTCAGAACCCTCCCCCTCGGGCAATGACGGAAA
AATGGCTCTGATCCTGGCCATGGCGTGCGATAAGTCCTTCAAGGAGAAGC
GCCCTGTCAAGATCGCTGAGGTCATGCCCTGAGCAGCAGCAGCAGCAGCA
GTGACAACAGCAGTAAAAGAAGTATCAGCAATGGCTTCGCGATGTTTTTT
GTGGTTGGATGAGGAGGGGAGCGAAGGGAGGGAGGGAGGGGCG
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protein sequence of NO26G00650.1

>NO26G00650.1-protein ID=NO26G00650.1-protein|Name=NO26G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MAATLTAAARRSVSSLSSSLLLKRNASTLKVGVIGAGRIGRVHLETLASV
PGVQPVILSDVVEPVLKEVTAQYGVPNYTLNGDEVINHPDVEAVWICSPS
QFHADQIKKCAAAGKHVFCEKPIATDLKGTIEAIKVAEDAGIKLMTAFQR
RFDPSFARLHKAIADGAVGDPISAILQSRDPSPPPFSYVKGGGGLFKDMA
IHDLDIARWLMGARGKNEVVSVYATGHCFIDPEIKQLEGSNPSEAIDTAF
IQLTFENGGNVTINVCRKATYGYDQRVEFFGKEGTLMHDNLYPNNVHLWN
GKSTGRIDLPHNFFMSRYAEAYKNETISFCKTLQEGSEPSPSGNDGKMAL
ILAMACDKSFKEKRPVKIAEVMP*
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mRNA from alignment at chr26:227323..230515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00650.1 ID=NO26G00650.1|Name=NO26G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=3193bp|location=Sequence derived from alignment at chr26:227323..230515- (Nannochloropsis oceanica)
CAACAACAGCCCTGGGAGCTTTAGATCGGGACGTGCCCCGGGGGGTTGAA
GCCCACGAGCAGAAGGAATGTGGGTTGTCCTGATTCACTCTCTTTTGATT
TAATGCTTTCGTTATGGTGCCGGAGATCACTTGGCTTTTCCCACCACGCA
ACACGTCCCAAGTCGACAACACAGGAGGCCTTGAAGCCACACACCGCCCT
AGCGCGTCCCGTAGATCTTTACGCTGGGACTAGATACAGCTTCTTGTCCT
TCCTCATTCTGGCCGCTGCCCTAGGCACGACCCCGGTTCAGCCTCCACTC
ATCCCTCACTAGGGGATGGAGACAGGATGCCATGTTATGTTGCTTTCCTA
ACTGAGCAACCGCGCGTTCAGTCAAACAAACCAGGTCACCATCGTTGCAG
TGCAGGTGTCGAGACCCGTGCTCCTGCACTCACTCGAAGTTCCTGCTCGT
GCCGCATCTTTTCTTTCCTTCTGTATGAAGAAACCGCAGCGAGAGCTATA
GCAGCCGCAGTAGCAAGAGCAGCATTAGTAGCAGAAGGACTATGCGCTGT
CGAAGCTCAATGTTTTGACCTACCATCTTCTCATCCCCTCCTCCTTCCCT
CCCTTCCTCCCCTCCGACTCCCCCACCGACAGACCCACCCCAGAAAAGCA
ACCCCTCACCATGGCTGCCACCCTGACCGCCGCCGCCCGCCGCAGCGTCT
CCTCCCTCTCCTCCTCCCTCCTGCTCAAGCGCAATGCCTCCACCCTCAAG
GTTGGTGTCATCGGCGCAGGCCGCATTGGCCGTGTCCATTTGGAGACGCT
TGCCTCCGTCCCAGGTGCGCGGTGGCTTGATTCGAAAGTCTTATAAGTGG
CGATCACTCAATAATCTAGTTCATTTTATTTACACCTCATCATCCAGACG
TGTGGCGACCCTATCACTTCATTGCATTGTATTTTATGAGTCGTCTAACT
GCCCCCGCCCGCCCTCCCCAACTTCCTCCCTCCCTCTATCTACAGGAGTG
CAGCCCGTCATCCTCTCCGATGTGGTGGAGCCGGTTCTGAAGGAGGTGAC
GGCCCAGTACGGCGTCCCCAACTATACCTTAAACGGTGATGAGGTACGAT
TTCGTCTGCCCTCCCTCCTTGTTCCCTCCCTCCCTCCCTACTTCCCCTGC
CCGTCCCCCCCTCTCTCCCCACTTCCCTTGTCGCGGCATTTTTCTCTTTT
GAAACCGTTGTGTAAGTCCACCGTGTTGCACCCCTTGAGTTGAGCACCAT
TTCACTCACACTATGTTTTTCACCCCTCTCCTCCCTCACCTTCTTGTCGC
CCTCCCTCCCTCTCTTCCCAGGTCATCAACCACCCGGACGTCGAGGCCGT
ATGGATCTGCTCCCCTTCCCAGTTCCACGCCGATCAGATCAAGAAATGCG
CGGCGGCAGGCAAGCACGTCTTTTGCGAGAAGCCCATTGCCACTGACCTC
AAGGGTACGATCGAGGCTATCAAGGTAAGCTGCTAGTGTCTTGCCCCCCC
TCGTCTATTAGTTTATTAGTAAACTGATTCGCTAATCGGTAACGACTCAC
TCAAATGATTCAAATAATTGAATTTAAATTTAAAATTTGAACAGGTGGCG
GAGGACGCCGGCATCAAGCTCATGACCGCCTTCCAACGTCGTTTCGACCC
ATCCTTCGCCCGTCTCCACAAGGCCATTGCCGACGGCGCCGTCGGAGACC
CCATCAGTGCCATCCTCCAATCGCGTGATCCCTCCCCCCCTCCCTTCTCC
TACGTCAAGGGAGGAGGAGGGCTGTTCAAGGACATGGCCATCCACGACTT
GGACATTGCCAGGTGGCTCATGGGCGCCCGAGGGAAGAATGAAGTCGTCT
CCGTACGTCTACCCGGCCTTCGTGATTTCCTTCTCTCCGTCCTTCCTTAC
CAACCTCATTATTCCCAACTTTCCTCGTCTTCGTGTCGGTATTTGTTCAA
TTTCCTCCAGGGGTGTTTCTCGTACTCACTTTTCCCCCTTCCCCCCGTCT
GTAGGTGTACGCAACGGGCCACTGTTTCATCGACCCCGAAATCAAGCAGC
TTGAGGGCAGCAACGTAAGATAGAAGGGAACGAGGGAGTGAGGGAAGGAG
GGTGGGAGGAACGGCAGATTGAGACATGCACGCACGTGTTTTCCTCCTCG
CCGTGTCTGACTGTACCGTAGGTTGATGACACTAACCATAATTGCTCCCT
CATCCTCACTGCTTTCCTCAAGCAAGATACTCACTGTACCCCCTCCCTCC
CCTCCCTCCCTCCCTCCCTCAGCCGAGCGAGGCCATCGACACGGCCTTCA
TCCAGCTCACCTTCGAGAACGGGGGCAACGTCACCATCAATGTGTGCCGC
AAGGCCACCTACGGCTATGACCAGCGCGTTGAGTTTTTCGGCAAGGAGGG
CACGCTCATGCACGACAATCTCTACCCTAACAACGTCCACCTCTGGAACG
GCAAGGTACGTACGGTGAAGCTCAACCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCTTCTTCTCGTTGTGTTTTAGATTCC
CTTCTTCCAAACGCCACTGCCATGTCCGTCCAGCTCCTCGAGCCTGTCAA
AACGATCCCCGTATCTCACTGGTCCTTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCTTCCCTCCTTCCCTCCCTCCCTCCCTCCAGTCCACTGGCCGCA
TCGATCTGCCCCACAACTTTTTCATGTCCCGGTACGCCGAGGCCTACAAG
AACGAGACGATCTCCTTCTGCAAGACCCTGCAGGAGGGTTCAGAACCCTC
CCCCTCGGGCAATGACGGAAAAATGGCTCTGATCCTGGCCATGGCGTGCG
ATAAGTCCTTCAAGGAGAAGCGCCCTGTCAAGTAAGGAGGAAGCGAGAGT
GGCAGGGATGGAGGGTGTAAGGAGATAGCGAAGGAGGGAGGGAATGAGGG
TGGTTTTTAATGTATGGGGTACTTCTTTCTTGACTTGAGGATAATATGTT
TGGAAGATGCTTGTATTTATTCATGCATTTTTGTATCTCCCTCTCATCTC
AACACTCTAGGATCGCTGAGGTCATGCCCTGAGCAGCAGCAGCAGCAGCA
GTGACAACAGCAGTAAAAGAAGTATCAGCAATGGCTTCGCGATGTTTTTT
GTGGTTGGATGAGGAGGGGAGCGAAGGGAGGGAGGGAGGGGCG
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Coding sequence (CDS) from alignment at chr26:227323..230515-

>NO26G00650.1 ID=NO26G00650.1|Name=NO26G00650.1|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at chr26:227323..230515- (Nannochloropsis oceanica)
ATGGCTGCCACCCTGACCGCCGCCGCCCGCCGCAGCGTCTCCTCCCTCTC
CTCCTCCCTCCTGCTCAAGCGCAATGCCTCCACCCTCAAGGTTGGTGTCA
TCGGCGCAGGCCGCATTGGCCGTGTCCATTTGGAGACGCTTGCCTCCGTC
CCAGGAGTGCAGCCCGTCATCCTCTCCGATGTGGTGGAGCCGGTTCTGAA
GGAGGTGACGGCCCAGTACGGCGTCCCCAACTATACCTTAAACGGTGATG
AGGTCATCAACCACCCGGACGTCGAGGCCGTATGGATCTGCTCCCCTTCC
CAGTTCCACGCCGATCAGATCAAGAAATGCGCGGCGGCAGGCAAGCACGT
CTTTTGCGAGAAGCCCATTGCCACTGACCTCAAGGGTACGATCGAGGCTA
TCAAGGTGGCGGAGGACGCCGGCATCAAGCTCATGACCGCCTTCCAACGT
CGTTTCGACCCATCCTTCGCCCGTCTCCACAAGGCCATTGCCGACGGCGC
CGTCGGAGACCCCATCAGTGCCATCCTCCAATCGCGTGATCCCTCCCCCC
CTCCCTTCTCCTACGTCAAGGGAGGAGGAGGGCTGTTCAAGGACATGGCC
ATCCACGACTTGGACATTGCCAGGTGGCTCATGGGCGCCCGAGGGAAGAA
TGAAGTCGTCTCCGTGTACGCAACGGGCCACTGTTTCATCGACCCCGAAA
TCAAGCAGCTTGAGGGCAGCAACCCGAGCGAGGCCATCGACACGGCCTTC
ATCCAGCTCACCTTCGAGAACGGGGGCAACGTCACCATCAATGTGTGCCG
CAAGGCCACCTACGGCTATGACCAGCGCGTTGAGTTTTTCGGCAAGGAGG
GCACGCTCATGCACGACAATCTCTACCCTAACAACGTCCACCTCTGGAAC
GGCAAGTCCACTGGCCGCATCGATCTGCCCCACAACTTTTTCATGTCCCG
GTACGCCGAGGCCTACAAGAACGAGACGATCTCCTTCTGCAAGACCCTGC
AGGAGGGTTCAGAACCCTCCCCCTCGGGCAATGACGGAAAAATGGCTCTG
ATCCTGGCCATGGCGTGCGATAAGTCCTTCAAGGAGAAGCGCCCTGTCAA
GATCGCTGAGGTCATGCCCTGA
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Synonyms
Publications