NO26G00580.1, NO26G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00580.1
Unique NameNO26G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr26:210765..211928 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:210765..211928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00580.1 vs.
Match: XP_014600290.1 (PREDICTED: protein arginine N-methyltransferase 7 [Polistes canadensis])

HSP 1 Score: 81.6 bits (200), Expect = 5.700e-12
Identity = 47/139 (33.81%), Postives = 78/139 (56.12%), Query Frame = 0 
Query:    4 GRPITVLDIGAGSGLLGMLAAREGGRERGEEVEVWCLEKEALLAGAAYLLAEDNGLSERVVVVNEASTDLEDATQLLEEEEVEEGEEGGREGRRFDVLVSEVFGDQPFSEGALQTFRHAQESMMEEGAIILPSRLRLWA 143
            G    VLDIG G+GLL M+AA+ G         V   E  + +A  A  + ++NG + ++ ++++ ST++                EGG   ++ ++LV+EVF  +   EGAL TFRHA E+++E+G+II+P+   +WA
Sbjct:   76 GEEANVLDIGTGTGLLSMMAAKCGADS------VTACEAFSPMAACAVTIIKENGFANKIKLIHKRSTEMTVG-------------EGGDMAKKANILVTEVFDTELIGEGALSTFRHAHETLLEKGSIIIPNSGTMWA 195
The following BLAST results are available for this feature:
BLAST of NO26G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_014600290.15.700e-1233.81PREDICTED: protein arginine N-methyltransferase 7 ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00580NO26G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00580.1NO26G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00580.1.cds1NO26G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00580.1 ID=NO26G00580.1|Name=NO26G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ATGGGGGGGGGGCGGCCCATCACAGTGTTGGATATCGGAGCCGGCAGTGG
GTTGTTGGGCATGCTGGCGGCGAGGGAGGGAGGGAGGGAGAGAGGGGAGG
AGGTCGAGGTGTGGTGTCTGGAGAAGGAAGCTTTGTTGGCAGGTGCGGCG
TACTTACTCGCAGAAGACAACGGCTTGTCGGAGAGGGTGGTGGTGGTGAA
CGAGGCCAGCACTGATCTAGAGGATGCCACGCAGCTCCTTGAGGAAGAGG
AGGTGGAGGAGGGGGAAGAGGGAGGGAGGGAAGGAAGACGATTCGACGTT
TTGGTGAGTGAGGTGTTTGGGGATCAGCCGTTTTCAGAGGGCGCGCTGCA
GACCTTCAGGCATGCACAGGAGAGCATGATGGAGGAAGGTGCCATCATCC
TTCCCTCCCGCCTTCGCCTGTGGGCGACTCTCGGGTGGGGAGGGCAGGAG
ATGGAGAAGCTCGGCCGCTTTCCTAGTAGAGGAGATTTTGGGGAGGGAGG
AACGGAGGGTGGGTGGGTAGAACGGGATGGGGAGGAGGAAGGGACGGAGG
GGTTGATGGAAGAAGAGGAGGGGGGCGCTGCGGGGCTGGAGTTGTCGGCA
TGGGATTGCGCCCTGGAGGTGCCGTTGTGTGTTAATTTGGAGACGGTCCT
CCCCCCCTCCCTCCCTCGGTATCTTGCTCTTGAGCCCGTATGTATAGGAG
AGGTGGATTTAGATCAGAGGCCATTGCCTCTGGCCGGCCAATTGGAGGGA
GGTTCGTTGGTGATCAAGGAGGGAAGAAGGGAGGGAGGGAGGAAAGGCGG
GAGGCGGGAAGAAGAGGAGGAGGAGGGGGAGGAGGAGCAGGAAGAGGAGG
AGGAGGAGAAGGAAGAAGGAGAAGGAAGGCGAGCAAATGCGTTGATTGTC
TGGTTCGAGCTTGTAATGTTCCCGGAGGACGAGGAGGAGGTTGAGGTCGA
GGAGGGCGAAGGAGTGGGAGCGGGGGGACTGGTGCTGAGCACGGCCCCGA
GTGGGCCGCGAGGGATGTCGAGTCATTGGAAGCAGGTTGTTTTCTACCTT
CCTCCCTCTCACCCTCACACTACGAGTTTAAAGGCAGGAGAGAGGGTGAG
GATTGTGGGTGCTTATGACAGAGACCGGCTGCGGGTGCAAGTGGTGGGGA
AGGAGGAAGGGTAG
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protein sequence of NO26G00580.1

>NO26G00580.1-protein ID=NO26G00580.1-protein|Name=NO26G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MGGGRPITVLDIGAGSGLLGMLAAREGGRERGEEVEVWCLEKEALLAGAA
YLLAEDNGLSERVVVVNEASTDLEDATQLLEEEEVEEGEEGGREGRRFDV
LVSEVFGDQPFSEGALQTFRHAQESMMEEGAIILPSRLRLWATLGWGGQE
MEKLGRFPSRGDFGEGGTEGGWVERDGEEEGTEGLMEEEEGGAAGLELSA
WDCALEVPLCVNLETVLPPSLPRYLALEPVCIGEVDLDQRPLPLAGQLEG
GSLVIKEGRREGGRKGGRREEEEEEGEEEQEEEEEEKEEGEGRRANALIV
WFELVMFPEDEEEVEVEEGEGVGAGGLVLSTAPSGPRGMSSHWKQVVFYL
PPSHPHTTSLKAGERVRIVGAYDRDRLRVQVVGKEEG*
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mRNA from alignment at chr26:210765..211928-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00580.1 ID=NO26G00580.1|Name=NO26G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp|location=Sequence derived from alignment at chr26:210765..211928- (Nannochloropsis oceanica)
ATGGGGGGGGGGCGGCCCATCACAGTGTTGGATATCGGAGCCGGCAGTGG
GTTGTTGGGCATGCTGGCGGCGAGGGAGGGAGGGAGGGAGAGAGGGGAGG
AGGTCGAGGTGTGGTGTCTGGAGAAGGAAGCTTTGTTGGCAGGTGCGGCG
TACTTACTCGCAGAAGACAACGGCTTGTCGGAGAGGGTGGTGGTGGTGAA
CGAGGCCAGCACTGATCTAGAGGATGCCACGCAGCTCCTTGAGGAAGAGG
AGGTGGAGGAGGGGGAAGAGGGAGGGAGGGAAGGAAGACGATTCGACGTT
TTGGTGAGTGAGGTGTTTGGGGATCAGCCGTTTTCAGAGGGCGCGCTGCA
GACCTTCAGGCATGCACAGGAGAGCATGATGGAGGAAGGTGCCATCATCC
TTCCCTCCCGCCTTCGCCTGTGGGCGACTCTCGGGTGGGGAGGGCAGGAG
ATGGAGAAGCTCGGCCGCTTTCCTAGTAGAGGAGATTTTGGGGAGGGAGG
AACGGAGGGTGGGTGGGTAGAACGGGATGGGGAGGAGGAAGGGACGGAGG
GGTTGATGGAAGAAGAGGAGGGGGGCGCTGCGGGGCTGGAGTTGTCGGCA
TGGGATTGCGCCCTGGAGGTGCCGTTGTGTGTTAATTTGGAGACGGTCCT
CCCCCCCTCCCTCCCTCGGTATCTTGCTCTTGAGCCCGTATGTATAGGAG
AGGTGGATTTAGATCAGAGGCCATTGCCTCTGGCCGGCCAATTGGAGGGA
GGTTCGTTGGTGATCAAGGAGGGAAGAAGGGAGGGAGGGAGGAAAGGCGG
GAGGCGGGAAGAAGAGGAGGAGGAGGGGGAGGAGGAGCAGGAAGAGGAGG
AGGAGGAGAAGGAAGAAGGAGAAGGAAGGCGAGCAAATGCGTTGATTGTC
TGGTTCGAGCTTGTAATGTTCCCGGAGGACGAGGAGGAGGTTGAGGTCGA
GGAGGGCGAAGGAGTGGGAGCGGGGGGACTGGTGCTGAGCACGGCCCCGA
GTGGGCCGCGAGGGATGTCGAGTCATTGGAAGCAGGTTGTTTTCTACCTT
CCTCCCTCTCACCCTCACACTACGAGTTTAAAGGCAGGAGAGAGGGTGAG
GATTGTGGGTGCTTATGACAGAGACCGGCTGCGGGTGCAAGTGGTGGGGA
AGGAGGAAGGGTAG
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Coding sequence (CDS) from alignment at chr26:210765..211928-

>NO26G00580.1 ID=NO26G00580.1|Name=NO26G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr26:210765..211928- (Nannochloropsis oceanica)
ATGGGGGGGGGGCGGCCCATCACAGTGTTGGATATCGGAGCCGGCAGTGG
GTTGTTGGGCATGCTGGCGGCGAGGGAGGGAGGGAGGGAGAGAGGGGAGG
AGGTCGAGGTGTGGTGTCTGGAGAAGGAAGCTTTGTTGGCAGGTGCGGCG
TACTTACTCGCAGAAGACAACGGCTTGTCGGAGAGGGTGGTGGTGGTGAA
CGAGGCCAGCACTGATCTAGAGGATGCCACGCAGCTCCTTGAGGAAGAGG
AGGTGGAGGAGGGGGAAGAGGGAGGGAGGGAAGGAAGACGATTCGACGTT
TTGGTGAGTGAGGTGTTTGGGGATCAGCCGTTTTCAGAGGGCGCGCTGCA
GACCTTCAGGCATGCACAGGAGAGCATGATGGAGGAAGGTGCCATCATCC
TTCCCTCCCGCCTTCGCCTGTGGGCGACTCTCGGGTGGGGAGGGCAGGAG
ATGGAGAAGCTCGGCCGCTTTCCTAGTAGAGGAGATTTTGGGGAGGGAGG
AACGGAGGGTGGGTGGGTAGAACGGGATGGGGAGGAGGAAGGGACGGAGG
GGTTGATGGAAGAAGAGGAGGGGGGCGCTGCGGGGCTGGAGTTGTCGGCA
TGGGATTGCGCCCTGGAGGTGCCGTTGTGTGTTAATTTGGAGACGGTCCT
CCCCCCCTCCCTCCCTCGGTATCTTGCTCTTGAGCCCGTATGTATAGGAG
AGGTGGATTTAGATCAGAGGCCATTGCCTCTGGCCGGCCAATTGGAGGGA
GGTTCGTTGGTGATCAAGGAGGGAAGAAGGGAGGGAGGGAGGAAAGGCGG
GAGGCGGGAAGAAGAGGAGGAGGAGGGGGAGGAGGAGCAGGAAGAGGAGG
AGGAGGAGAAGGAAGAAGGAGAAGGAAGGCGAGCAAATGCGTTGATTGTC
TGGTTCGAGCTTGTAATGTTCCCGGAGGACGAGGAGGAGGTTGAGGTCGA
GGAGGGCGAAGGAGTGGGAGCGGGGGGACTGGTGCTGAGCACGGCCCCGA
GTGGGCCGCGAGGGATGTCGAGTCATTGGAAGCAGGTTGTTTTCTACCTT
CCTCCCTCTCACCCTCACACTACGAGTTTAAAGGCAGGAGAGAGGGTGAG
GATTGTGGGTGCTTATGACAGAGACCGGCTGCGGGTGCAAGTGGTGGGGA
AGGAGGAAGGGTAG
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Synonyms
Publications