NO26G00430.1, NO26G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00430.1
Unique NameNO26G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1470
Alignment locationchr26:136074..138843 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:136074..138843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO26G00430.1 vs.
Match: BBB37586.1 (ascorbate peroxidase [Chattonella marina var. antiqua])

HSP 1 Score: 331.6 bits (849), Expect = 2.200e-87
Identity = 165/255 (64.71%), Postives = 197/255 (77.25%), Query Frame = 0 
Query:   10 GAAITAAVTTPDTTMPSKAEVQARGLLIDLYRAKPCMPIMVRLAWHDAGTFSAKDNTGGANASIRFDAEISHGANAGLTWAAQQLQTIKDAVPEIGYADLYQLASVVAVEFAGGPSIPFRLGRKDAKEKEVTPDGRLPDAKKGHEHLRDIFYRMGMVDREIVALSGAHALGRAHPDRSGFDGAWTKEPLVFDNSYFTELLAKEADPALLKLPSDLALLETPTMAKWVKAYAADEQLFFRDYAAAHVKLSELGQFQ 265
            GAA+    T+ +T      E   + L I +Y+  PCMP+MVRLAWHDAGT+ A D TGGANASIRFD E  HGANAGL  A ++L+ +K +  EI YADLYQLASVVA+EF GGP IPFRLGR D  +++ TPDGRLPDA +G  HLRDIF RMGM D+EIVALSGAH LGRAH DRSGF+GAWT+EPLVFDNSYFTELLAK+ D +LLKLP+D A+LE P M K V++YA D++ FF DY+ AH+KLSELG F+
Sbjct:    2 GAALCKKDTSSNTADQKLIEAVKKDL-ISMYQETPCMPLMVRLAWHDAGTYCAADKTGGANASIRFDPEKGHGANAGLQIAMEKLEPLKASHSEISYADLYQLASVVAIEFCGGPQIPFRLGRTDMPQEKCTPDGRLPDANQGCPHLRDIFGRMGMTDKEIVALSGAHTLGRAHKDRSGFEGAWTQEPLVFDNSYFTELLAKDQDSSLLKLPTDTAMLEDPEMKKLVESYAEDQKKFFEDYSQAHLKLSELGAFE 255
The following BLAST results are available for this feature:
BLAST of NO26G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
BBB37586.12.200e-8764.71ascorbate peroxidase [Chattonella marina var. anti... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00430NO26G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00430.1NO26G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00430.1.cds1NO26G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00430.1.cds2NO26G00430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00430.1.cds3NO26G00430.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00430.1.cds4NO26G00430.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00430.1.cds5NO26G00430.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00430.1.cds6NO26G00430.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00430.1 ID=NO26G00430.1|Name=NO26G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
TCTAAACACCGCGGTACAGCACCATTTCATTCGTGCCGATGAATATCTTA
GCAATGCCATCCCTATGCAGCAGGTCTCAAGACGGCATAACGAAGTCCAG
CACCACTGGCAAGACTTCCCCTCCCTTCATCCCAAGCACGAAATGCATCA
CAGGAGATTATCGAAACAAAGGCATGAATAAAGAGATAGAGAGAGGGGCT
TTGAGTGCATGACTTGGAGCCCTGCTCGCATGAAAGTCCATGCGACGTCT
GGAAAGTCGGGGGGTTAGTAAGAACCGTGGGATAGACAACGGACAAACAC
TTAATTCTTGGGGGGCCGCTGCATTCTCATGTCCTCAAGCACTTAGCATT
TCCCCCCTTCTTTAACAGCTCCCCTATTGTAAACATGTCCTGCATACCTT
GTGGTAACCCCGGTGCGGCCATCACTGCAGCTGTGACCACCCCAGATACC
ACCATGCCTTCCAAAGCCGAAGTCCAGGCCCGCGGTCTTCTCATCGATCT
TTATCGCGCCAAGCCCTGCATGCCCATCATGGTCCGCCTGGCTTGGCACG
ACGCAGGCACGTTTTCCGCGAAGGACAACACGGGCGGGGCCAATGCTTCC
ATTCGTTTCGATGCCGAAATCTCCCACGGGGCGAATGCCGGCCTGACCTG
GGCGGCGCAGCAGTTGCAGACGATCAAGGACGCCGTGCCCGAGATCGGCT
ACGCTGATCTTTACCAGCTCGCCTCAGTCGTGGCTGTCGAGTTCGCCGGT
GGTCCTTCTATCCCCTTCCGCTTGGGCCGAAAGGACGCAAAGGAGAAGGA
GGTCACCCCCGACGGCCGTCTGCCGGACGCCAAAAAAGGCCACGAGCACC
TCCGTGATATCTTCTACCGCATGGGCATGGTAGATAGGGAGATCGTTGCT
CTCTCTGGCGCTCACGCCTTGGGGAGGGCGCACCCTGACAGGTCGGGTTT
CGACGGGGCCTGGACGAAGGAGCCGCTGGTCTTCGATAACTCCTACTTCA
CGGAACTTCTTGCCAAGGAAGCTGACCCCGCCCTCCTCAAGCTGCCTTCC
GACCTGGCCCTGCTGGAGACCCCTACGATGGCCAAATGGGTGAAGGCTTA
TGCCGCTGACGAGCAGCTGTTCTTTCGGGACTATGCTGCGGCGCACGTGA
AGTTGAGCGAGTTGGGACAGTTCCAGTGAAGACGTTTATTGTCGCGTCGA
GGGAGGGAAAGAGAGAAGGATTGGAGAAGGGGGGGGGGGAAGGGGGGTGA
GAGATAACCAAGGAATGTGAGTTCCGGCATGATAATGGATGGAGGAGGGA
GAGAGGGAAGAGGGGAATGAAAACTATCATTGATGATCGATTTATCCATT
TATTTTTCTTTAAAAAAAGTGGAATGAGCTGACTGAGAAGAACGAGGGTG
AATGGATGAAGGAGGGGGGGGGGAATGGGAGGGATGAAGCCGAGAAGAAC
AAGAGGAACGGTAGAGGAGA
back to top

protein sequence of NO26G00430.1

>NO26G00430.1-protein ID=NO26G00430.1-protein|Name=NO26G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MSCIPCGNPGAAITAAVTTPDTTMPSKAEVQARGLLIDLYRAKPCMPIMV
RLAWHDAGTFSAKDNTGGANASIRFDAEISHGANAGLTWAAQQLQTIKDA
VPEIGYADLYQLASVVAVEFAGGPSIPFRLGRKDAKEKEVTPDGRLPDAK
KGHEHLRDIFYRMGMVDREIVALSGAHALGRAHPDRSGFDGAWTKEPLVF
DNSYFTELLAKEADPALLKLPSDLALLETPTMAKWVKAYAADEQLFFRDY
AAAHVKLSELGQFQ*
back to top

mRNA from alignment at chr26:136074..138843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00430.1 ID=NO26G00430.1|Name=NO26G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2770bp|location=Sequence derived from alignment at chr26:136074..138843- (Nannochloropsis oceanica)
TCTAAACACCGCGGTACAGCACCATTTCATTCGTGCCGATGAATATCTTA
GCAATGCCATCCCTATGCAGCAGGTCTCAAGACGGCATAACGAAGTCCAG
CACCACTGGCAAGACTTCCCCTCCCTTCATCCCAAGCACGAAATGCATCA
CAGGAGATTATCGAAACAAAGGCATGAATAAAGAGATAGAGAGAGGGGCT
TTGAGTGCATGACTTGGAGCCCTGCTCGCATGAAAGTCCATGCGACGTCT
GGAAAGTCGGGGGGTTAGTAAGAACCGTGGGATAGACAACGGACAAACAC
TTAATTCTTGGGGGGCCGCTGCATTCTCATGTCCTCAAGCACTTAGCATT
TCCCCCCTTCTTTAACAGCTCCCCTATTGTAAACATGTCCTGCATACCTT
GTGGTAACCCCGGTGCGGCCATCACTGCAGCTGTGGTACGTGAACAACAT
GGGCAACACGCAAGCAGATCAAAGAACAATCGAAGACATTGGCGTCTTCG
GATATCCACTTCTTATGTCCTTGTGTTCGATTTTGCTGGCGTGGCAATTA
CCATTTAGACATGCGCGTCCGTCTTGTCGTAGGCATTCTTTCATAGAAAT
GGAACAATATAGCGGGCGGGGCGGTCGCATGTGTTCAACAAAAGATTTGT
GTCTTCTTCATTCGCAAATCATGTGTTTCTTTCTACAGCTCTGACGATGT
CCACTCTACCACTCCCTACTCACAGACCACCCCAGATACCACCATGCCTT
CCAAAGCCGAAGTCCAGGCCCGCGGTCTTCTCATCGATCTTTATCGCGCC
AAGCCCTGCATGCCCATCATGGTCCGCCTGGCTTGGCACGACGCAGGCAC
GTTTTCCGCGAAGGACAACACGGGCGGGGCCAATGCTTCCATTCGTTTCG
ATGCCGAAATCTCCCACGGGGCGAATGCCGGCCTGACCTGGGCGGCGCAG
CAGTTGCAGGTACGAAAGAAAGTAGCAGCCGGCCGTGTTAAGGAAGGAGA
GGGACAGACATTTCTTCTACTAGGTTACCTCATCCCTCCCTCCCTCCCCA
GACGATCAAGGACGCCGTGCCCGAGATCGGCTACGCTGATCTTTACCAGC
TCGCCTCAGTCGTGGCTGTCGAGTTCGCCGGTGGTCCTTCTATCCCCTTC
CGCTTGGGCCGAAAGGACGCAAAGGAGAAGGAGGTACGAGTGGAGGGGGG
GGGGAGGGACGGATGCTACACACACACCTCCCAAGAATCTCTTTATGCAT
TGATCTAACCTAGACGATGCTTTACGTCGAATTCATTTTAATGTGACCCC
GAATGATCGCTTGATTAATGCCAAGTAAGGCCACGGAGCTCTTTGCCCCT
TTTCCCACGCCTACACCCTACCCTCCCCTTCCTCCCTTCCTCCCTCCCTC
CCTCCTTTCAGGTCACCCCCGACGGCCGTCTGCCGGACGCCAAAAAAGGC
CACGAGCACCTCCGTGATATCTTCTACCGCATGGGCATGGTAGATAGGGA
GATCGTTGCTCTCTCTGGCGCTCACGCCTTGGGGAGGGCGCACCCTGACA
GGTCGGGTTTCGACGGGGCCTGGACGAAGGAGCCGCTGGTCTTCGATAAC
TCCTACTTCACGGTACGTCCCGTCCCTCCCGTCCATCCCTCCTGCCCTCC
CTTTCTTCCTCCCTTTTTCCTGGGTGCCTGTGTTGTTGTTGTCTGAGTTT
GAAGTTGTAGCACTGTTTCGACTTGAATGGCTATTACGACAGCGCGTGTC
TTCCCTTCCGAACCACATAAATGATGTTTTTACGAATATTGGATGGTTTT
ATTGAATTTACTATAATCAACTACATGTAATTATCTGGAAGAAAGGGTGC
TGTTCGTTGTTTTGAACTTACGCTCACCCCCCCCCCCCTACACCTACACG
AAGAGGAGCTCCTCAAAAAGGCACAAACGCACACAATCTATCACATTTAC
ACTCTCACTCAAATACATTCATTTTTCACACACTTAAATTTATTTATTTA
TACACACACACGCCCACACCCACCCCCATCCCCCTACACCTACACGAACA
GGAACTTCTTGCCAAGGAAGCTGACCCCGCCCTCCTCAAGCTGCCTTCCG
ACCTGGCCCTGCTGGAGACCCCTACGATGGCCAAATGGGTGAAGGCTTAT
GCCGCTGACGAGCAGCTGTTCTTTCGGGACTATGCTGCGGCGCACGTGAA
GTTGAGCGAGTTGGGACAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGATTGGATAATTTCTGGTTGTGTTTGCTCGATATAGCGAG
CACGGTGGCGAGGGAGGGAGAGAAAAAGGGATGGAGGGAAGAAGGGATGG
AGGGAAGAAGGGATGGAGGGAAGGAGGGATGGTGGGGCTTGTGAAGAGGG
GGTCTTCGTCATATTTTTTGTCTTCCATCTTTTTTCTGACACTTCATTTT
TTTCCAACCTGCACCCACAGTTCCAGTGAAGACGTTTATTGTCGCGTCGA
GGGAGGGAAAGAGAGAAGGATTGGAGAAGGGGGGGGGGGAAGGGGGGTGA
GAGATAACCAAGGAATGTGAGTTCCGGCATGATAATGGATGGAGGAGGGA
GAGAGGGAAGAGGGGAATGAAAACTATCATTGATGATCGATTTATCCATT
TATTTTTCTTTAAAAAAAGTGGAATGAGCTGACTGAGAAGAACGAGGGTG
AATGGATGAAGGAGGGGGGGGGGAATGGGAGGGATGAAGCCGAGAAGAAC
AAGAGGAACGGTAGAGGAGA
back to top

Coding sequence (CDS) from alignment at chr26:136074..138843-

>NO26G00430.1 ID=NO26G00430.1|Name=NO26G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr26:136074..138843- (Nannochloropsis oceanica)
ATGTCCTGCATACCTTGTGGTAACCCCGGTGCGGCCATCACTGCAGCTGT
GACCACCCCAGATACCACCATGCCTTCCAAAGCCGAAGTCCAGGCCCGCG
GTCTTCTCATCGATCTTTATCGCGCCAAGCCCTGCATGCCCATCATGGTC
CGCCTGGCTTGGCACGACGCAGGCACGTTTTCCGCGAAGGACAACACGGG
CGGGGCCAATGCTTCCATTCGTTTCGATGCCGAAATCTCCCACGGGGCGA
ATGCCGGCCTGACCTGGGCGGCGCAGCAGTTGCAGACGATCAAGGACGCC
GTGCCCGAGATCGGCTACGCTGATCTTTACCAGCTCGCCTCAGTCGTGGC
TGTCGAGTTCGCCGGTGGTCCTTCTATCCCCTTCCGCTTGGGCCGAAAGG
ACGCAAAGGAGAAGGAGGTCACCCCCGACGGCCGTCTGCCGGACGCCAAA
AAAGGCCACGAGCACCTCCGTGATATCTTCTACCGCATGGGCATGGTAGA
TAGGGAGATCGTTGCTCTCTCTGGCGCTCACGCCTTGGGGAGGGCGCACC
CTGACAGGTCGGGTTTCGACGGGGCCTGGACGAAGGAGCCGCTGGTCTTC
GATAACTCCTACTTCACGGAACTTCTTGCCAAGGAAGCTGACCCCGCCCT
CCTCAAGCTGCCTTCCGACCTGGCCCTGCTGGAGACCCCTACGATGGCCA
AATGGGTGAAGGCTTATGCCGCTGACGAGCAGCTGTTCTTTCGGGACTAT
GCTGCGGCGCACGTGAAGTTGAGCGAGTTGGGACAGTTCCAGTGA
back to top
Synonyms
Publications