NO26G00390.1, NO26G00390.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO26G00390.1
Unique Name	NO26G00390.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2409
Alignment location	chr26:120452..124222 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr26	genome	chr26:120452..124222 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO26G00390.1 vs.
Match: GAX92961.1 (Hypothetical protein PINS_000895 [Pythium insidiosum])

HSP 1 Score: 208.0 bits (528), Expect = 5.900e-50
Identity = 111/203 (54.68%), Postives = 135/203 (66.50%), Query Frame = 0

Query:  136 VSCGGMHTGAVTADGQLYTWGRGDNGQLGIGRKWLEERSNTGK-GLGCPSLVPPESFDAP-VRQLSCGAFHTAAVTRSGKVFTWGREEHGMLGHDVPPDKFTDAQDRPKEVETTVHTGPARSVSCGGWHTCMVTEVGRVFTCGRGEYGRLGLGDQRSRLTVVEVEGLEEEPVVEASAGGTHTMVLTKQGHIYSYGRGDFDRLG 337
            +SCGG HT A+TADGQ+YTWGR D+GQLGIG KW++E  + G   +  P LV  + FD   V Q++CGAFHTAAVT SGKVF WG+E++GMLG     D  T     PK +E    + PA  VSCGGWHT +VT  G  ++ GRGEYGRLGLGD RSR     VE L+   VV+A+ GGTHT+ LT  G  +S GR D  RLG
Sbjct:  183 ISCGGAHTAALTADGQVYTWGRSDSGQLGIGEKWVQESGDHGTLYVASPHLV--DGFDGEKVVQVACGAFHTAAVTESGKVFIWGKEDYGMLGVGQTSDIQT-----PKRIEF-FDSKPALRVSCGGWHTVVVTREGECYSFGRGEYGRLGLGDTRSRYRPHLVEALKGHRVVQAACGGTHTLFLTTDGVAFSAGRADHGRLG 377

The following BLAST results are available for this feature:

BLAST of NO26G00390.1 vs.

BLAST of NO26G00390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
GAX92961.1	5.900e-50	54.68	Hypothetical protein PINS_000895 [Pythium insidios...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO26G00390	NO26G00390	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO26G00390.1	NO26G00390.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO26G00390.1.cds1	NO26G00390.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00390.1.cds2	NO26G00390.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00390.1.cds3	NO26G00390.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00390.1.cds4	NO26G00390.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00390.1.cds5	NO26G00390.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00390.1.cds6	NO26G00390.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00390.1.cds7	NO26G00390.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr26:120452..124222+
coding sequence from alignment at chr26:120452..124222+

mRNA sequence

>NO26G00390.1 ID=NO26G00390.1|Name=NO26G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2409bp
CTCTCCTTCTCCCATCCTCTCCACAATAACTGCCTCGTATGTCTGGGGCA
GAAAACGTTCTAAGAAAAACGCTAGAGATAAACCCGCGATACCACCCCCT
TGAATTAAGACACGTTTTCGACGTCCATATGCAGGTAATGATGGGGAGAG
GACATGTGCTTTGCTGGTGTTCGTGGAGGCATGGTTGCACGGGTAGAAGT
AGGAGCGGGAGTAGGACCTTGATGATGCAGAGCAGCCTGGCAGGCTTCTA
TTTCTGCATTTGCTCGTGTTGGTTTTTGAGGTGGAGGTATGGAGGTAGGA
GGAGGAGGAGGTGGAGGAGGAGGACGAGGACGACTGGGGTGGGGAGGTTG
ACGTGGTCGAAAAAGGACAGAAAGGGTGCAGAGGGGGGCCCCGGCGAGTG
GTCAGTATTGCGCGCAAGGTCATGAAAGAGGTCTGGATGTCTACCAGTAG
AGAGCGGCAGGAGTGGAGGGAGGGTTGGGGAGCTGAGCGTGCGTGCTGTG
ATTAAAAAAGAGGCATTGCGGACATCAAGCTCGCTGATGAGAAGATGCAT
TCGTTCTCCATACCTCCTTCCCGACGCATACGCACAGATACAGCCAAAGG
AGAAGGAAAGCAGGGCAGGATAATGGCTGACGCCCGCCCGCCCTTCTTTT
ACTCGTCATTTTCCACGGTCGGCAACATTTTGACGTCCAATGAGAAGGAG
GCGGAACGACAACGGCAGCAACAGTCAGGACCAGGGAGTGAGGAAACGGG
GGAAGTACGGGAGCTATTGCCGTACGAGGAGTGGGCAGAGTCAAATTTGT
TGTGTTGGGGACGGAGTCAGGACGGACAAGCGGGACCCGCCCCCATCGAA
GTCGACCAAATTAAAGTAGTTCCTCATCCGACTCCCATTCGTTTCCCCTT
TAAGACACGCCGGCGTATTGTGGCCGTGTCATGCGGCTCTCGCCACACCC
TGGCCTTGGACGATCAGGCAGTTCCCTATTCATGGGGATGGGGCCTCTGC
GGTCAACTGGGTCAGGGAGATTTCCCAGCCTACCAGCCCTCCCCCCGCAT
CATCCCCTCCCTCGCTCCTTCCTCCTCCTCGCCCTCCTCGTCTACCCCAT
GCCCAGGGGTTCAATCGATCTCGGCGGGGGGGGTGCACTCTGCTGCTGTG
GACCGAGAAGGCCGGGTCTTCACCTGGGGCGAGGGGAGCTACGGCCAATT
AGGACTCGGGGACGAGGTCATCTCCCAGGCCTTCTCCCAACCCATTCCCT
CCCTCGTCCTCCTCCCCCCCCGGGAGGCGATCATCAAGACGACGGACAGC
ACAATGTGGACCCCCGCCCCCTCCTCGCCTCCACGGTGTCTTGCGGTGGC
ATGCACACGGGCGCCGTCACGGCCGACGGCCAACTGTATACCTGGGGTAG
AGGCGATAATGGCCAGCTTGGGATCGGGCGAAAGTGGCTCGAGGAAAGGA
GCAACACCGGAAAAGGCCTTGGCTGCCCCAGCCTCGTGCCCCCTGAGTCG
TTCGACGCCCCGGTGCGACAGCTGTCATGCGGCGCCTTCCACACGGCCGC
AGTGACGAGGAGTGGGAAAGTCTTCACTTGGGGGAGGGAGGAGCACGGCA
TGCTAGGCCATGACGTCCCTCCGGACAAATTTACGGACGCCCAAGACCGG
CCGAAGGAAGTGGAGACAACGGTGCACACAGGGCCTGCGCGGAGTGTGTC
GTGTGGGGGGTGGCATACGTGCATGGTCACCGAGGTGGGGAGGGTCTTCA
CCTGTGGACGAGGGGAGTACGGTCGACTCGGGTTGGGGGACCAACGGAGT
CGTCTGACGGTCGTAGAAGTGGAGGGACTGGAGGAGGAGCCGGTGGTCGA
GGCCTCGGCCGGCGGGACGCATACGATGGTGCTCACGAAACAAGGGCATA
TATACAGTTACGGCCGAGGCGACTTCGATCGGTTGGGCCTGCGTCCTTCT
CCTGCGTCGGCGTCTTTCCCCTCTCCCTCCTCTCCCTCTTCTCCGCCCTC
GTCCTCATCCTCTTCCCTAGATTCCTACCGGCCAAAGCTAGTGCAATATT
TGAAAATGGCAAGGCAACGCGTGTGTTGTGTGCAGTCGGGAGGTGCCCAC
TCGGCGTGCATCGTGGAACCCCCTACCGAAGACGAACAAGCGCAGGTGAC
GCAGCAGCAGCAGTACGACAAACACCAGCAGCAGTCACCGCTGTCGCCAC
AGCAAGGTAACAAATAAAATAATGCTACGGGGAATAGAAAATAAAGTCAA
AAAGTTTTTGCGTCGGTGGCGACCGGAAGTGGGAGTAAGGTTGAGATTAT
CTCCCTTACGAGGTCCTTACGAGGTGTACGGCTTCGAGCGCATGAATAAG
ATACTAAAAAAAAGATCCCGAAAAAGAACTTAAGGAATAGGGAGCCTCTA
TCCTCAAGC

protein sequence of NO26G00390.1

>NO26G00390.1-protein ID=NO26G00390.1-protein|Name=NO26G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MRLSPHPGLGRSGSSLFMGMGPLRSTGSGRFPSLPALPPHHPLPRSFLLL
ALLVYPMPRGSIDLGGGGALCCCGPRRPGLHLGRGELRPIRTRGRGHLPG
LLPTHSLPRPPPPPGGDHQDDGQHNVDPRPLLASTVSCGGMHTGAVTADG
QLYTWGRGDNGQLGIGRKWLEERSNTGKGLGCPSLVPPESFDAPVRQLSC
GAFHTAAVTRSGKVFTWGREEHGMLGHDVPPDKFTDAQDRPKEVETTVHT
GPARSVSCGGWHTCMVTEVGRVFTCGRGEYGRLGLGDQRSRLTVVEVEGL
EEEPVVEASAGGTHTMVLTKQGHIYSYGRGDFDRLGLRPSPASASFPSPS
SPSSPPSSSSSSLDSYRPKLVQYLKMARQRVCCVQSGGAHSACIVEPPTE
DEQAQVTQQQQYDKHQQQSPLSPQQGNK*

mRNA from alignment at chr26:120452..124222+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO26G00390.1 ID=NO26G00390.1|Name=NO26G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=3771bp|location=Sequence derived from alignment at chr26:120452..124222+ (Nannochloropsis oceanica)
CTCTCCTTCTCCCATCCTCTCCACAATAACTGCCTCGTATGTCTGGGGCA
GAAAACGTTCTAAGAAAAACGCTAGAGATAAACCCGCGATACCACCCCCT
TGAATTAAGACACGTTTTCGACGTCCATATGCAGGTAATGATGGGGAGAG
GACATGTGCTTTGCTGGTGTTCGTGGAGGCATGGTTGCACGGGTAGAAGT
AGGAGCGGGAGTAGGACCTTGATGATGCAGAGCAGCCTGGCAGGCTTCTA
TTTCTGCATTTGCTCGTGTTGGTTTTTGAGGTGGAGGTATGGAGGTAGGA
GGAGGAGGAGGTGGAGGAGGAGGACGAGGACGACTGGGGTGGGGAGGTTG
ACGTGGTCGAAAAAGGACAGAAAGGGTGCAGAGGGGGGCCCCGGCGAGTG
GTCAGTATTGCGCGCAAGGTCATGAAAGAGGTCTGGATGTCTACCAGTAG
AGAGCGGCAGGAGTGGAGGGAGGGTTGGGGAGCTGAGCGTGCGTGCTGTG
ATTAAAAAAGAGGCATTGCGGACATCAAGCTCGCTGATGAGAAGATGCAT
TCGTTCTCCATACCTCCTTCCCGACGCATACGCACAGATACAGCCAAAGG
AGAAGGAAAGCAGGGCAGGATAATGGCTGACGCCCGCCCGCCCTTCTTTT
ACTCGTCATTTTCCACGGTCGGCAACATTTTGACGTCCAATGAGAAGGAG
GCGGAACGACAACGGCAGCAACAGTCAGGACCAGGGAGTGAGGAAACGGG
GGAAGTACGGGAGCTATTGCCGTACGAGGAGTGGGCAGAGTCAAATTTGT
TGTGTTGGGGACGGAGTCAGGACGGACAAGCGGGTAAGCAAGGAGGAAGG
AAAAGAGGGCGGGGAGGGTGGGTAGGGAGGGGACGGGTTGGGTCGTGCTT
TGACTAGGCCAGCGTGTGTATAAGTGTCTGCGTGTTGTGGTCATGCATCT
GCCCAGAGAGCTCTTACATTATATTTACCTCATTAAAATTAAAATTCCAT
TTTGTTTATCCCGTCCCCCCCTTCCCCCGTCCTTCCTTCCCTTTCTCTCT
TCCTCCCTCCCTCCCTCCCTCCCTCCTACTACCTTTCCTCCCTACCCCAG
GACCCGCCCCCATCGAAGTCGACCAAATTAAAGTAGTTCCTCATCCGACT
CCCATTCGTTTCCCCTTTAAGACACGCCGGCGTATTGTGGCCGTGTCATG
CGGCTCTCGCCACACCCTGGCCTTGGACGATCAGGTAGGGGAAGAGGGAG
GGAGGAAGGATAGCGATTTAGCGTCTACTGCCTTACACTCGGAATTGAAC
CCCTCTTCCTCCCTCCCTCCCTCTCCCCCTTCCTATTTCCTTCCTGTAGG
CAGTTCCCTATTCATGGGGATGGGGCCTCTGCGGTCAACTGGGTCAGGGA
GATTTCCCAGCCTACCAGCCCTCCCCCCGCATCATCCCCTCCCTCGCTCC
TTCCTCCTCCTCGCCCTCCTCGTCTACCCCATGCCCAGGGGTTCAATCGA
TCTCGGCGGGGGGGGTGCACTCTGCTGCTGTGGACCGAGAAGGCCGGGTC
TTCACCTGGGGCGAGGGGAGCTACGGCCAATTAGGACTCGGGGACGAGGG
TGAGGAGGAGGGAGGAAAGGAAGGAGGGAGGGAGGGAGGGGGAGGGAGGG
AGGGAGGGAGGAGGGGCTGGCTTGACCACGAGAAAGTAAATTAAAAAAGA
AAAGAGTAAAAAAGAAATAAAAAAGGAAATCCTCTTAACCCCCTCCCTCT
CTCTTCCTCCTCCCTCCTTCAGTCATCTCCCAGGCCTTCTCCCAACCCAT
TCCCTCCCTCGTCCTCCTCCCCCCCCGGGAGGCGATCATCAAGACGACGG
ACAGCACAATGTGGACCCCCGCCCCCTCCTCGCCTCCACGGTGTCTTGCG
GTGGCATGCACACGGGCGCCGTCACGGCCGACGGCCAACTGTATACCTGG
GGTAGAGGCGATAATGGCCAGCTTGGTAAGCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAATTTTCTCCCTCCCTCC
CTCCCTCCCTCCCTTTCCATTCCCTCCCTCGCTCCCTTGCTTCAAACCGG
GGCTATTTCTCACAGAGGGGGAAAAACGCACTTTTTGGCCTCGCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCACCAG
GGATCGGGCGAAAGTGGCTCGAGGAAAGGAGCAACACCGGAAAAGGCCTT
GGCTGCCCCAGCCTCGTGCCCCCTGAGTCGTTCGACGCCCCGGTGCGACA
GCTGTCATGCGGCGCCTTCCACACGGCCGCAGTGACGAGGAGTGGGAAAG
TCTTCACTTGGGGGAGGGAGGTAGGGAGGGAGGGAGAGAAGGAGGGAGGG
AGGGAGGGAGGGAGAGGAGCTCTTTTCAGTGCGGAGGGAAGTAGGGCAAG
AGGGAGGGTGTATGTTTCAGCGCTCTGCGGGCTGCATGTGATCGACATGG
TCAGGATAAGTCAGAGCTGGCGCGTTTCCCCTGCCCCTCTCCCACCCTCC
TACCCCTATTCCTCCTCTGGATGATATATCACCAGGAGCACGGCATGCTA
GGCCATGACGTCCCTCCGGACAAATTTACGGACGCCCAAGACCGGCCGAA
GGAAGTGGAGACAACGGTGAGTACTTTCCCTTTCTCTTCCTTTCTTCCCT
CCCTCCTTCCCTCCTTCCCTCCCTCCCTCTCTCCCTCCAGGAATCGATCT
TCTCCGCTCGTCCGTCCCTCCCTCCCTTCCCGCCCTCACGCCCTCCCTCC
TGCATTGTGTATAGGTGCACACAGGGCCTGCGCGGAGTGTGTCGTGTGGG
GGGTGGCATACGTGCATGGTCACCGAGGTGGGGAGGGTCTTCACCTGTGG
ACGAGGGTGAGACAGGAGGGAGGGAGGGAGGGAGAAGGCATGAAGGCTTG
TGCTCAAAGACAAGACATTCACCCTACCTGTCTCTCTGTCACTGTCAAGC
GAAGAAGACGGCCATAAGACATGCATTTAACGTGTCCCTTCCTCTCTCCG
TCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCACCGTCCCTC
CGTCCCTCCGTCCCTCCCTCCCTAGGGAGTACGGTCGACTCGGGTTGGGG
GACCAACGGAGTCGTCTGACGGTCGTAGAAGTGGAGGGACTGGAGGAGGA
GCCGGTGGTCGAGGCCTCGGCCGGCGGGACGCATACGATGGTGCTCACGA
AACAAGGGCATATATACAGTTACGGCCGAGGCGACTTCGATCGGTTGGGC
CTGCGTCCTTCTCCTGCGTCGGCGTCTTTCCCCTCTCCCTCCTCTCCCTC
TTCTCCGCCCTCGTCCTCATCCTCTTCCCTAGATTCCTACCGGCCAAAGC
TAGTGCAATATTTGAAAATGGCAAGGCAACGCGTGTGTTGTGTGCAGTCG
GGAGGTGCCCACTCGGCGTGCATCGTGGAACCCCCTACCGAAGACGAACA
AGCGCAGGTGACGCAGCAGCAGCAGTACGACAAACACCAGCAGCAGTCAC
CGCTGTCGCCACAGCAAGGTAACAAATAAAATAATGCTACGGGGAATAGA
AAATAAAGTCAAAAAGTTTTTGCGTCGGTGGCGACCGGAAGTGGGAGTAA
GGTTGAGATTATCTCCCTTACGAGGTCCTTACGAGGTGTACGGCTTCGAG
CGCATGAATAAGATACTAAAAAAAAGATCCCGAAAAAGAACTTAAGGAAT
AGGGAGCCTCTATCCTCAAGC

Coding sequence (CDS) from alignment at chr26:120452..124222+

>NO26G00390.1 ID=NO26G00390.1|Name=NO26G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr26:120452..124222+ (Nannochloropsis oceanica)
ATGCGGCTCTCGCCACACCCTGGCCTTGGACGATCAGGCAGTTCCCTATT
CATGGGGATGGGGCCTCTGCGGTCAACTGGGTCAGGGAGATTTCCCAGCC
TACCAGCCCTCCCCCCGCATCATCCCCTCCCTCGCTCCTTCCTCCTCCTC
GCCCTCCTCGTCTACCCCATGCCCAGGGGTTCAATCGATCTCGGCGGGGG
GGGTGCACTCTGCTGCTGTGGACCGAGAAGGCCGGGTCTTCACCTGGGGC
GAGGGGAGCTACGGCCAATTAGGACTCGGGGACGAGGTCATCTCCCAGGC
CTTCTCCCAACCCATTCCCTCCCTCGTCCTCCTCCCCCCCCGGGAGGCGA
TCATCAAGACGACGGACAGCACAATGTGGACCCCCGCCCCCTCCTCGCCT
CCACGGTGTCTTGCGGTGGCATGCACACGGGCGCCGTCACGGCCGACGGC
CAACTGTATACCTGGGGTAGAGGCGATAATGGCCAGCTTGGGATCGGGCG
AAAGTGGCTCGAGGAAAGGAGCAACACCGGAAAAGGCCTTGGCTGCCCCA
GCCTCGTGCCCCCTGAGTCGTTCGACGCCCCGGTGCGACAGCTGTCATGC
GGCGCCTTCCACACGGCCGCAGTGACGAGGAGTGGGAAAGTCTTCACTTG
GGGGAGGGAGGAGCACGGCATGCTAGGCCATGACGTCCCTCCGGACAAAT
TTACGGACGCCCAAGACCGGCCGAAGGAAGTGGAGACAACGGTGCACACA
GGGCCTGCGCGGAGTGTGTCGTGTGGGGGGTGGCATACGTGCATGGTCAC
CGAGGTGGGGAGGGTCTTCACCTGTGGACGAGGGGAGTACGGTCGACTCG
GGTTGGGGGACCAACGGAGTCGTCTGACGGTCGTAGAAGTGGAGGGACTG
GAGGAGGAGCCGGTGGTCGAGGCCTCGGCCGGCGGGACGCATACGATGGT
GCTCACGAAACAAGGGCATATATACAGTTACGGCCGAGGCGACTTCGATC
GGTTGGGCCTGCGTCCTTCTCCTGCGTCGGCGTCTTTCCCCTCTCCCTCC
TCTCCCTCTTCTCCGCCCTCGTCCTCATCCTCTTCCCTAGATTCCTACCG
GCCAAAGCTAGTGCAATATTTGAAAATGGCAAGGCAACGCGTGTGTTGTG
TGCAGTCGGGAGGTGCCCACTCGGCGTGCATCGTGGAACCCCCTACCGAA
GACGAACAAGCGCAGGTGACGCAGCAGCAGCAGTACGACAAACACCAGCA
GCAGTCACCGCTGTCGCCACAGCAAGGTAACAAATAA

Synonyms

Publications