NO26G00380.1, NO26G00380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00380.1
Unique NameNO26G00380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1537
Alignment locationchr26:117920..120466 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:117920..120466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00380.1 vs.
Match: PLS84640.1 (hypothetical protein CYG60_16870 [Actinobacteria bacterium])

HSP 1 Score: 125.6 bits (314), Expect = 3.800e-25
Identity = 113/331 (34.14%), Postives = 156/331 (47.13%), Query Frame = 0 
Query:   63 GTPLQEGDLLFLRRSLLLSL----LRNRVSS--PILHRDQILSLEDEDEGG-------------REGGRVRVTLQSGKEEVVDIVVGADGMFSPLVRETTMGLPPPAQRGYTVFRGVY--EGSPLQPGFSFQTWGPSSRFSSVPLADGQV-WFATLAHHNSSSSSSTGGGSRSMEGGREALKEGLLQRFGSWHAPVRGLIEGTREALIVKEEAWAQTDFPRGGGREGGRAGRGRRVTLVGDAAHGVDPILAQGAGVAIEDAYHLVYHLAHAQGEGGKEGGDRIAGALSAYEKSTYQRASLLTSISNLSQFIGQLPPGPILSLRDALLPSLP 372
            GTP   G +   R  +L S+    L +RV S    +HR  + +L   + G              ++   V V L  G+ E  D++VGADG+ S  VR +  G   P   GYT +R V   EG  L  G  F+TWG  +RF    + +G+V WFAT    N+      G       G  +  K  LL+ F  WH PV  L+E T EA I +++ + +    R G  EG       RVTL+GDAAH   P + QGA +A+EDA      LA   GE  ++G   +A AL  YE    +RA+ +  IS     IGQL    +  LRD +L + P
Sbjct:  228 GTPASAGVIRSWRGEVLASVPVAKLEDRVGSVSAAVHRADLQALLARELGAGPLRLGSGCAGFEQDERGVTVLLADGRRERADVLVGADGLHST-VRASLFGQKEPRYAGYTSWRAVARPEGELLPWGQGFETWGRGARFGCAHIGEGRVYWFAT---RNAPKGEKDGP-----PGSPDGPKRALLELFRGWHRPVEALVEATEEAEIRRDDLYDREPLKRWG--EG-------RVTLLGDAAHPTTPNIGQGACLAVEDA----VVLARCLGE-QRDGTGGVAEALRRYEGLRRERAAKIVRISRRLGRIGQLENPALRRLRDLVLKAAP 535
The following BLAST results are available for this feature:
BLAST of NO26G00380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PLS84640.13.800e-2534.14hypothetical protein CYG60_16870 [Actinobacteria b... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00380NO26G00380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00380.1NO26G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00380.1.cds1NO26G00380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00380.1.cds2NO26G00380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00380.1.cds3NO26G00380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00380.1.cds4NO26G00380.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00380.1.cds5NO26G00380.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00380.1.cds6NO26G00380.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00380.1 ID=NO26G00380.1|Name=NO26G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp
ATGGGAGAAGGAGAGGATGTCGCCATGACCGGGCACCTGGCACTAGGCTT
GTGGGTGAATGGCTTGCGCTGCCTCGCAAAAGGCGGATTATCGTTGCCAG
AGGTATTGGCTCAAGGAGAACATTCGTTTGCATGGATGCTGGACTCCGGA
TACTTGACGACGGACGGACGCCTACTAGCCAAGCCCGGGACTCCCCTGCA
GGAGGGTGACCTCCTCTTCCTCCGCCGCTCCCTCCTCCTCTCCCTCCTCC
GCAACCGCGTTTCCTCCCCCATCCTTCACCGAGATCAAATCCTCTCCCTC
GAGGATGAGGACGAAGGCGGGAGAGAAGGTGGGAGGGTCCGCGTCACTCT
CCAGAGCGGGAAGGAGGAGGTGGTGGACATCGTTGTGGGCGCAGACGGAA
TGTTCTCTCCACTGGTACGAGAAACAACAATGGGGCTGCCTCCTCCTGCG
CAAAGAGGATACACTGTCTTTCGTGGAGTATACGAGGGATCGCCACTACA
GCCTGGCTTCTCCTTTCAGACCTGGGGTCCCTCCTCCCGCTTCTCTTCCG
TCCCACTCGCCGACGGGCAGGTTTGGTTCGCCACCCTAGCGCACCACAAC
AGCAGCAGCAGCAGCAGTACAGGTGGTGGTAGCCGCAGTATGGAGGGAGG
GAGGGAGGCATTAAAGGAGGGATTGCTGCAGAGATTCGGGTCGTGGCATG
CGCCGGTGAGGGGGTTGATCGAAGGGACGAGAGAGGCATTAATTGTGAAG
GAGGAGGCATGGGCCCAAACAGATTTTCCAAGAGGGGGAGGGAGGGAGGG
AGGGAGGGCAGGGAGAGGGAGGAGGGTTACCTTGGTGGGGGATGCGGCGC
ATGGGGTCGACCCCATTCTCGCTCAAGGCGCGGGTGTGGCCATCGAAGAC
GCCTACCATCTCGTGTATCACTTGGCCCATGCCCAGGGGGAGGGAGGGAA
GGAGGGAGGGGATCGGATCGCTGGGGCTCTGAGTGCCTACGAAAAAAGCA
CCTACCAGCGCGCATCCCTCCTCACCAGCATCAGCAATTTATCTCAGTTC
ATCGGCCAGCTCCCACCTGGGCCCATATTATCTCTGCGTGACGCCCTCCT
TCCCTCCCTCCCTCCCGCCTTCAAGGGCAGGATCTTCGACGCCTGCATTC
GGCTGTCGCTCGCGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTTGGGGTACTGGCCTCC
TACGATGACGATGAAAAACGAACAAAACGATTAAATGTCGCTTATTGCTT
CGCGCCCATCCTATACTCCTTCCCACCTGCCCCCTCCGTCCCTCCCTCCC
CTCCCTCCCTCCCTCCTTCCTGTTTGACGCCTTCGCATCGCTGGCGAGGG
CGGGGAGGAAGGGAAGGAGGGAGGGAGGAAGGGAGTAAATGAAGAGGTGA
GACGCAGAAGACGACGAGGAGGAGGATGAAAGAAAAGAAAGCAATAAATG
AGCGAACAATCTTTTACTAAAATGACTCTATGGTAGG
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protein sequence of NO26G00380.1

>NO26G00380.1-protein ID=NO26G00380.1-protein|Name=NO26G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MGEGEDVAMTGHLALGLWVNGLRCLAKGGLSLPEVLAQGEHSFAWMLDSG
YLTTDGRLLAKPGTPLQEGDLLFLRRSLLLSLLRNRVSSPILHRDQILSL
EDEDEGGREGGRVRVTLQSGKEEVVDIVVGADGMFSPLVRETTMGLPPPA
QRGYTVFRGVYEGSPLQPGFSFQTWGPSSRFSSVPLADGQVWFATLAHHN
SSSSSSTGGGSRSMEGGREALKEGLLQRFGSWHAPVRGLIEGTREALIVK
EEAWAQTDFPRGGGREGGRAGRGRRVTLVGDAAHGVDPILAQGAGVAIED
AYHLVYHLAHAQGEGGKEGGDRIAGALSAYEKSTYQRASLLTSISNLSQF
IGQLPPGPILSLRDALLPSLPPAFKGRIFDACIRLSLARGGREGGREGGR
EGGREGGREGGLGYWPPTMTMKNEQND*
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mRNA from alignment at chr26:117920..120466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00380.1 ID=NO26G00380.1|Name=NO26G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2547bp|location=Sequence derived from alignment at chr26:117920..120466- (Nannochloropsis oceanica)
ATGGGAGAAGGAGAGGTGGGTACATGGGAGGGAAGGAGAGAGGGAGGGAG
GGCGGGAGGGCGAGAGGGAGGAATGAAAGGGTGGAAAAGAGGCATGAGAA
TGATAGGGAATGCATTTTTATCTCGCTGCATGCGTGCTGGACCTAATTTG
CCCTCTCAACCTTTTTGCAGGATGTCGCCATGACCGGGCACCTGGCACTA
GGCTTGTGGGTGAATGGCTTGCGCTGCCTCGCAAAAGGCGGATTATCGTT
GCCAGAGGTATTGGCTCAAGGAGAACATTCGTTTGCATGGATGCTGGACT
CCGGATACTTGACGACGGACGGACGGTGAGGGAGGGAGGAAGGAAGGGAG
GGAGGGAGGGAGGGGCCTGTGGGTGGATGCTTCGTGGATTGTCAGTACCA
GGATTGACTAGGGATAGCAAAAGACTGTCTCGGAAAGTGCTGGCAAAAGG
CGGGAGAGGATCATTTCGGTGGACCATCTCGGTGGATACTGGACTCTGGC
TGTGGGACTTTGGAAGGTCGGCGAGGAAAGACGAAGGGGGGGAGGGAGGG
AGGGAGGGAGGCAGGGAGAGCGAGAATCATCAGATGCCTCTATGGGTAAG
CTTTCACGATTCTTATCTATCAGCCCTCCCTCTCCCACTCCCTCGCTCCC
TCATTCACTCCCTCCCTCTACTTTCTCCATGCCAAGCCTACTAGCCAAGC
CCGGGACTCCCCTGCAGGAGGGTGACCTCCTCTTCCTCCGCCGCTCCCTC
CTCCTCTCCCTCCTCCGCAACCGCGTTTCCTCCCCCATCCTTCACCGAGA
TCAAATCCTCTCCCTCGAGGATGAGGACGAAGGCGGGAGAGAAGGTGGGA
GGGTCCGCGTCACTCTCCAGAGCGGGAAGGAGGAGGTGGTGGACATCGTT
GTGGGCGCAGACGGAATGTTCTCTCCACTGGTACGAGAAACAACAATGGG
GCTGCCTCCTCCTGCGCAAAGAGGATACACTGTCTTTCGTGGAGTATACG
AGGGATCGCCACTACAGCCTGGCTTCTCCTTTCAGGTGCGCTGCTCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCGGTCTTCCTCCCTTGTT
CAAACCTCATTCTATCAACCTCAATCCTTTTCCTCCTTCCTTCCCTCCCT
CCCTCCAGACCTGGGGTCCCTCCTCCCGCTTCTCTTCCGTCCCACTCGCC
GACGGGCAGGTTTGGTTCGCCACCCTAGCGCACCACAACAGCAGCAGCAG
CAGCAGTACAGGTGGTGGTAGCCGCAGTATGGAGGGAGGGAGGGAGGCAT
TAAAGGAGGGATTGCTGCAGAGATTCGGGTCGTGGCATGCGCCGGTGAGG
GGGTTGATCGAAGGGACGAGAGAGGCATTAATTGTGAAGGAGGAGGCATG
GGCCCAAACAGATTTTCCAAGAGGGGGAGGGAGGGAGGGAGGGAGGGCAG
GGAGAGGGAGGAGGGTTACCTTGGTGGGGGATGCGGCGCATGGGGTGAGT
CGGAAGGGAGGGAGGGAGGGAGGGAGGAGAAGATACATAGATGTAGGGAT
TATTTGCCCAAGAAGTAATCGCCCACATTCCCCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCTTTCAGGTCGACCCCATTCTCGCTCAAGGCGCGGGTGTGGCCAT
CGAAGACGCCTACCATCTCGTGTATCACTTGGCCCATGCCCAGGGGGAGG
GAGGGAAGGAGGGAGGGGATCGGATCGCTGGGGCTCTGAGGTGAGAGTCT
TGCATGGATTAGGAGTAGAGAGTGAATACCCTCCGAGTGCCTCCCTCACT
TCCTCTTTCCTTCCCTCCCTCCCTCCCTTCCTTCCTTCCTCCCTCCCGTC
TTACCGCAACATCCAGATGAGTGCACTTCCCTCCTCACTCCTCACTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCAGTGCCTAC
GAAAAAAGCACCTACCAGCGCGCATCCCTCCTCACCAGCATCAGCAATTT
ATCTCAGTTCATCGGCCAGCTCCCACCTGGGCCCATATTATCTCTGCGTG
ACGCCCTCCTTCCCTCCCTCCCTCCCGCCTTCAAGGGCAGGATCTTCGAC
GCCTGCATTCGGCTGTCGCTCGCGAGGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTTGGGGT
ACTGGCCTCCTACGATGACGATGAAAAACGAACAAAACGATTAAATGTCG
CTTATTGCTTCGCGCCCATCCTATACTCCTTCCCACCTGCCCCCTCCGTC
CCTCCCTCCCCTCCCTCCCTCCCTCCTTCCTGTTTGACGCCTTCGCATCG
CTGGCGAGGGCGGGGAGGAAGGGAAGGAGGGAGGGAGGAAGGGAGTAAAT
GAAGAGGTGAGACGCAGAAGACGACGAGGAGGAGGATGAAAGAAAAGAAA
GCAATAAATGAGCGAACAATCTTTTACTAAAATGACTCTATGGTAGG
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Coding sequence (CDS) from alignment at chr26:117920..120466-

>NO26G00380.1 ID=NO26G00380.1|Name=NO26G00380.1|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr26:117920..120466- (Nannochloropsis oceanica)
ATGGGAGAAGGAGAGGATGTCGCCATGACCGGGCACCTGGCACTAGGCTT
GTGGGTGAATGGCTTGCGCTGCCTCGCAAAAGGCGGATTATCGTTGCCAG
AGGTATTGGCTCAAGGAGAACATTCGTTTGCATGGATGCTGGACTCCGGA
TACTTGACGACGGACGGACGCCTACTAGCCAAGCCCGGGACTCCCCTGCA
GGAGGGTGACCTCCTCTTCCTCCGCCGCTCCCTCCTCCTCTCCCTCCTCC
GCAACCGCGTTTCCTCCCCCATCCTTCACCGAGATCAAATCCTCTCCCTC
GAGGATGAGGACGAAGGCGGGAGAGAAGGTGGGAGGGTCCGCGTCACTCT
CCAGAGCGGGAAGGAGGAGGTGGTGGACATCGTTGTGGGCGCAGACGGAA
TGTTCTCTCCACTGGTACGAGAAACAACAATGGGGCTGCCTCCTCCTGCG
CAAAGAGGATACACTGTCTTTCGTGGAGTATACGAGGGATCGCCACTACA
GCCTGGCTTCTCCTTTCAGACCTGGGGTCCCTCCTCCCGCTTCTCTTCCG
TCCCACTCGCCGACGGGCAGGTTTGGTTCGCCACCCTAGCGCACCACAAC
AGCAGCAGCAGCAGCAGTACAGGTGGTGGTAGCCGCAGTATGGAGGGAGG
GAGGGAGGCATTAAAGGAGGGATTGCTGCAGAGATTCGGGTCGTGGCATG
CGCCGGTGAGGGGGTTGATCGAAGGGACGAGAGAGGCATTAATTGTGAAG
GAGGAGGCATGGGCCCAAACAGATTTTCCAAGAGGGGGAGGGAGGGAGGG
AGGGAGGGCAGGGAGAGGGAGGAGGGTTACCTTGGTGGGGGATGCGGCGC
ATGGGGTCGACCCCATTCTCGCTCAAGGCGCGGGTGTGGCCATCGAAGAC
GCCTACCATCTCGTGTATCACTTGGCCCATGCCCAGGGGGAGGGAGGGAA
GGAGGGAGGGGATCGGATCGCTGGGGCTCTGAGTGCCTACGAAAAAAGCA
CCTACCAGCGCGCATCCCTCCTCACCAGCATCAGCAATTTATCTCAGTTC
ATCGGCCAGCTCCCACCTGGGCCCATATTATCTCTGCGTGACGCCCTCCT
TCCCTCCCTCCCTCCCGCCTTCAAGGGCAGGATCTTCGACGCCTGCATTC
GGCTGTCGCTCGCGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTTGGGGTACTGGCCTCC
TACGATGACGATGAAAAACGAACAAAACGATTAA
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Synonyms
Publications