NO26G00350.1, NO26G00350.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO26G00350.1
Unique Name	NO26G00350.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2311
Alignment location	chr26:107158..110913 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr26	genome	chr26:107158..110913 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO26G00350.1 vs.
Match: CBN74406.1 (Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [Ectocarpus siliculosus])

HSP 1 Score: 318.5 bits (815), Expect = 2.900e-83
Identity = 169/335 (50.45%), Postives = 221/335 (65.97%), Query Frame = 0

Query:   61 EAPPLPTLAVDEQGRSRLPWKKEGYSYWTWQGNQIHYVALEGENARQSNKPPIVLIHGFGASVFHWRYNIPALA-ENHRVYAIDLLGFGLSAKPLTEYNAEVWRNQLAAFLQEIVGVGGSLGGPKAIVVGNSLGGYTALATAAFHPELVQACAVLNGAGSF-DPPPEAVAAVEVTRLKLNKTRSGKGYLLDGLKERLGHAARRVVLYSAFFYTKQPGRIKQVLQQVYLNKDNVDDELVESIRYPSLHPNAAEVFCRVVTRTSTQGALTTVNKLLSMLDMPLLLLWGDRDPWISPRMAERMRDLYPAAKRVGLDAGHCPHDEVPEAVNSELLKWIE 394
            EA   P ++   +G  R+PW++EGY  W + G++I+YV  EG+ +    KP +VLIHGFGASV+HWRYNIPAL  + +RV A+DLLGFGLS KP+ EY+AE WR+Q+ AF+ E+VG         A+V GNSLGG+TALA A+  P  ++ C +LNGAG F D   EA+  V+    K    R       D   + +G   +R +  ++F+YTKQP RIKQVL QVY +  NVDDELVESIR PSL PNA EVF RV++RT   G   TV++LL     PLLLLWG+ DPWI P  A++++ LYP A R  + AGHCPHDE PE VN  L+ W++
Sbjct:  117 EAAATPRVSSAMEGLERIPWREEGYLSWEYDGHKINYVD-EGDKS----KPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGA-------DAVVAGNSLGGFTALAAASHAPNSIKGCVMLNGAGRFRDREQEALLEVQ----KNAPPRPPFLLAWDEAIKYVGTFVQRAITRASFYYTKQPARIKQVLTQVYPDPRNVDDELVESIRVPSLDPNAPEVFQRVISRTGGPG--LTVDELLEGFTSPLLLLWGELDPWIRPAAADKIQGLYPEATRFSVQAGHCPHDEAPEVVNDALVSWLK 433

The following BLAST results are available for this feature:

BLAST of NO26G00350.1 vs.

BLAST of NO26G00350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN74406.1	2.900e-83	50.45	Predicted hydrolases or acyltransferases (alpha/be...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO26G00350	NO26G00350	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO26G00350.1	NO26G00350.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO26G00350.1.cds1	NO26G00350.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00350.1.cds2	NO26G00350.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00350.1.cds3	NO26G00350.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00350.1.cds4	NO26G00350.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00350.1.cds5	NO26G00350.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00350.1.cds6	NO26G00350.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00350.1.cds7	NO26G00350.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00350.1.cds8	NO26G00350.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00350.1.cds9	NO26G00350.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr26:107158..110913+
coding sequence from alignment at chr26:107158..110913+

mRNA sequence

>NO26G00350.1 ID=NO26G00350.1|Name=NO26G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2311bp
GGACCATGAACCATGACGCAGAAGCATGAAAGCAAAAAGTGTCACGGCAC
AAGTTTGTTCTCAAACAAGCGCGGTTGACCAGCGATCAACCTAGCTACAG
TTAGGACGCCCGTTCTTGTTATTTATGCCGGCGTACGGGGTGGTGCCGGC
ACGAAGGCCGGCAAAGCACTTACTCATCTTCATGGAACAATCGTCACACG
ACATCATTTCATTGCTTCTTCTCTTTCGCCTCATCACATTCACATTCCAC
GCACACACGCACAGTCCACGACCAAATAATGCCAACATCCCCGCGCCTCT
GCCTCCGCAGGGGCAGTCTCCTCCTTCTTCTTTTCGCAGCGGTAGCGCCC
TCCACCTTAGCCTTCCTCCTTCCCTCCCTACCTCCTTCCCCTTCCACCTC
AACCCGCCTCGCCCTCTCCCCTCTCTCCTCGCCGTCCTCCGACACGCTTA
GCACCCTCGAGGCCCCTCCGTTACCCACGCTTGCTGTGGATGAGCAGGGA
CGCTCACGTCTGCCGTGGAAGAAAGAGGGCTACAGTTACTGGACCTGGCA
AGGGAATCAAATTCATTATGTGGCGCTAGAGGGTGAGAATGCCCGGCAGT
CGAACAAACCGCCTATTGTCCTCATCCACGGGTTTGGTGCATCGGTCTTT
CACTGGCGTTACAACATTCCGGCCCTTGCGGAGAATCATCGAGTCTACGC
CATCGACTTGTTGGGCTTCGGATTGAGCGCGAAGCCTCTGACGGAGTATA
ATGCGGAGGTGTGGCGGAATCAGCTGGCTGCCTTCTTACAAGAGATCGTG
GGCGTGGGCGGCTCGCTGGGTGGCCCCAAGGCCATCGTGGTGGGGAATAG
CTTGGGAGGTTACACGGCCCTTGCCACCGCTGCCTTCCATCCGGAGCTCG
TTCAAGCCTGTGCAGTTCTAAACGGCGCTGGTTCTTTCGATCCTCCCCCT
GAAGCGGTCGCTGCTGTGGAGGTGACTCGTCTGAAGCTAAATAAAACTAG
GAGTGGGAAAGGCTATTTGCTGGACGGGCTCAAGGAGAGATTGGGCCACG
CTGCTCGACGCGTGGTGCTGTACTCGGCCTTCTTCTACACTAAGCAGCCG
GGAAGGATCAAGCAGGTGTTGCAACAGGTGTACCTCAACAAGGACAACGT
GGACGACGAGCTGGTGGAATCCATCCGCTATCCTTCCCTACACCCCAACG
CCGCGGAGGTCTTTTGCCGTGTCGTGACCCGGACGAGCACCCAAGGCGCT
CTGACAACCGTGAACAAACTGCTCTCCATGCTAGACATGCCGCTCCTGCT
CTTGTGGGGAGATCGCGATCCTTGGATCAGTCCACGCATGGCCGAGCGCA
TGCGCGATCTCTACCCGGCCGCGAAACGCGTGGGCCTAGATGCCGGCCAT
TGTCCCCACGACGAGGTTCCTGAGGCCGTTAATTCAGAGCTCCTGAAATG
GATCGAGGAAATGAGCCCGTAAGAGTAAGATTGCGCCCAGATCGTTTTCC
TCTTTTCTTTCTGTTCCTTCCTCGCTGTCCGATCATGATTAGAGAAGCCT
GGGCATCTTGTTTTTGTACTAGCGGAGAGATGTAGCACTTCTTTTAGTTT
TACCTAATCCTTTTATTTTTTTCAAATTGCTTGTTAATTTGTGCATACAG
AGATGAGATCAGTTCAAAGTACGATAGAGGCTCGAATGAAAGAAGAATGA
AGAGATAATCTGAAGCGAGAGAAGGAGGCAAGAGAAGACGATGCGAGAGC
AAAGAAAAAGTTGTGTGAAGGTGACATTGGGCCGATTAAAACAAAAAAAT
TAACAATCATGGCAGGTCATACAATCATTCTAGGTTTGTACTAGGAATTT
TAGCAACGGATCGAAAAATATACGAATATCGTCCTTTTGCTATCAACCTT
ACGCCAGCCCGCACACCATAGCATCAGTAATTTTTGAAGTGGCGTTTTCC
CAGAAATGGTCATGTATTCTTGCTCTGAAGAGCTGGTAAAGGTACCGTAA
ATCAATTCGTTTCGACACAAGCAAGTTGTATGTAACTTTTTCGCTACCAG
GAGGTTGTTCTCTGTGTGACCTGCGATACTGCCAAATCTCCGAATACCAT
AATCTCGCAAGACGATTCAATAATAATGCTCGCATTGAATCGTCCAGGAG
GTTATCCAGTGTCTGCGTGTAGAGCTCTCTTCTGGAAAAGGAGGGGGTGA
GTGGCAAGGGAAAAAGTAAGCTTGAAGTATTGCCGTTCCTTTTTACTCAA
ATCCGAGCAGAGCGGTCGTGATTCGTTTCCACCCCTCCTCATCTACAACT
CACGCCACATA

protein sequence of NO26G00350.1

>NO26G00350.1-protein ID=NO26G00350.1-protein|Name=NO26G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MPTSPRLCLRRGSLLLLLFAAVAPSTLAFLLPSLPPSPSTSTRLALSPLS
SPSSDTLSTLEAPPLPTLAVDEQGRSRLPWKKEGYSYWTWQGNQIHYVAL
EGENARQSNKPPIVLIHGFGASVFHWRYNIPALAENHRVYAIDLLGFGLS
AKPLTEYNAEVWRNQLAAFLQEIVGVGGSLGGPKAIVVGNSLGGYTALAT
AAFHPELVQACAVLNGAGSFDPPPEAVAAVEVTRLKLNKTRSGKGYLLDG
LKERLGHAARRVVLYSAFFYTKQPGRIKQVLQQVYLNKDNVDDELVESIR
YPSLHPNAAEVFCRVVTRTSTQGALTTVNKLLSMLDMPLLLLWGDRDPWI
SPRMAERMRDLYPAAKRVGLDAGHCPHDEVPEAVNSELLKWIEEMSP*

mRNA from alignment at chr26:107158..110913+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO26G00350.1 ID=NO26G00350.1|Name=NO26G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=3756bp|location=Sequence derived from alignment at chr26:107158..110913+ (Nannochloropsis oceanica)
GGACCATGAACCATGACGCAGAAGCATGAAAGCAAAAAGTGTCACGGCAC
AAGTTTGTTCTCAAACAAGCGCGGTTGACCAGCGATCAACCTAGCTACAG
TTAGGACGCCCGTTCTTGTTATTTATGCCGGCGTACGGGGTGGTGCCGGC
ACGAAGGCCGGCAAAGCACTTACTCATCTTCATGGAACAATCGTCACACG
ACATCATTTCATTGCTTCTTCTCTTTCGCCTCATCACATTCACATTCCAC
GCACACACGCACAGTCCACGACCAAATAATGCCAACATCCCCGCGCCTCT
GCCTCCGCAGGGGCAGTCTCCTCCTTCTTCTTTTCGCAGCGGTAGCGCCC
TCCACCTTAGCCTTCCTCCTTCCCTCCCTACCTCCTTCCCCTTCCACCTC
AACCCGCCTCGCCCTCTCCCCTCTCTCCTCGCCGTCCTCCGACACGCTTA
GCACCCTCGAGGCCCCTCCGTTACCCACGCTTGCTGTGGATGAGCAGGGA
CGCTCACGTCTGCCGTGGAAGAAAGAGGGCTACAGTTACTGGACCTGGCA
AGGGAATCAAATTCATTATGTGGCGCTAGGTGAGGAGAGGGGGGAGGGAA
AGAGGGAGAGAGGGAGGGAATCAGGGGATGATGAAAAGCCTGTTTGGAGT
TTACAAGATCACTTATTTTCCTGTTAATCCCTCTCAATTTAACTTTCGTA
CTTCTGTCATCACAGAGGGTGAGAATGCCCGGCAGTCGAACAAACCGCCT
ATTGTCCTCATCCACGGGTTTGGTGCATCGGTAGGTTTAAAGGAGGGTGA
GATATAGGAAGGATAACAGAAAAGACAAATTGACAAGGCTGAGAGGTAGT
GTGAGATGTCATATGGTAAAAAGGGAAGGCACATGAATTGTCCCAGTGGC
GCTTCCGGAGAGAGACACATTTCCCTCCCTTCCTCCGCTCCCTCTCCCCC
CGTAGGTCTTTCACTGGCGTTACAACATTCCGGCCCTTGCGGAGAATCAT
CGAGTCTACGCCATCGACTTGTTGGGCTTCGGATTGAGCGCGAAGCCTCT
GACGGAGTATAATGCGGAGGTAAGAAGCCGGGAAGCCGGGAGTCGCTTTT
TAATGGTGTGTTTGTTTATTGCTTGGTTGTTTTATTTATACGTTCATTCT
TGTATGTCACTTTGAACCTTAGTGATTCATTTGTTCTGTGTCCACTCACT
CACGTGTTTATTTTTATATTCTCCATCTCGTCCCATTTTATATCACAGGT
GTGGCGGAATCAGCTGGCTGCCTTCTTACAAGAGATCGTGGGCGTGGGCG
GCTCGCTGGGTGGCCCCAAGGCCATCGTGGTGGGGAATAGCTTGGGAGGT
AAGAGAGAAGGGAAGGAGGCGGGGAAGGAGGGAAAGAAAGATGGGAAGGA
ATGAGGAAATGGCCTCATTCACAGGTAGAATCTTTTCTTTCTTTCTAGGG
ATCCTGCTCTAGCCACTTTTCTGCCTTGACTACACTTACCTCTCTCTCGT
TCCTTTTCTCCCTCCCTCCCTCCATCTCTACCTCCCTCCCTTCCTCTTTC
CCTCCCAAGGTTACACGGCCCTTGCCACCGCTGCCTTCCATCCGGAGCTC
GTTCAAGCCTGTGCAGTTCTAAACGGCGCTGGTTCTTTCGATCCTCCCCC
TGAAGCGGTCGCTGCTGTGGAGGTGACTCGTCTGAAGGTGCGCCCGCCCT
CCCTCCTTCTCTCTCTCACCCTGCACTTGAGAAGCACGCTTCTTACCCCG
CCCCCTTTCCTCCCTCCCTCCCTCGCAGCTAAATAAAACTAGGAGTGGGA
AAGGCTATTTGCTGGACGGGCTCAAGGAGAGATTGGGCCACGCTGCTCGA
CGCGTGGTGCTGTACTCGGCCTTCTTCTACACTAAGCAGCCGGGAAGGAT
CAAGCAGGTGTTGCAACAGGTAGGGAAAGGGTGGTGAGGATGTGAAAGAA
GTAGATGATAGGGAAGGGACGACGAACCGTAGGCCAAGTTTTTTTTAATA
AAGAGACAGGGAGACAGAGACTCATATCTGTAGACATATTTAAGAATGAT
CAGGACGCGAGGGAGGAATCGCGACGGAAACTAAAATGCATCCGCTCTCT
GTATGTCTATCTCTTGAGCAGGTGTACCTCAACAAGGACAACGTGGACGA
CGAGCTGGTGGAATCCATCCGCTATCCTTCCCTACACCCCAACGCCGCGG
AGGTAAGGACAAAATGAGATTGGACTAGGACACAAATAGATGAGTTTCGT
ATATTTATGATATGTATGCCGTGTGCTTATCGAAGGAAAGGCTTTGATCG
GCAACCGCACATTAATGGGATCGTCCTGCTTTATCCCTCCTTCCTTGCGC
TCAGGTCTTTTGCCGTGTCGTGACCCGGACGAGCACCCAAGGCGCTCTGA
CAACCGTGAACAAACTGCTCTCCATGCTAGACATGCCGCTCCTGCTCTTG
TGGGGAGATCGCGATCCTTGGATCAGGTACATGTTGAATAGAGAGAAGGG
GGAAGAGATCGGGGTTCGAGGAAATTGTTATGTTATCGTGATTGACCTTT
TTTTTTTACTGGTCGCGTGTCGCGGAAACTGAATACGCACACTGACACAT
TCATGCTCTTGCGAAACCAGGGCAGGCGCGCGCGTTATTTGACAAATCAA
TGGACTAAAGAAATGGACTAAAGACACTGTCATTGTCGCCTGTCTTTTCT
AGACCTTGCAAGACAAATAATCAATGCACACACACATCTCATACAACGCG
CACCAACAAACTCTCACTTCTACAGTCCACGCATGGCCGAGCGCATGCGC
GATCTCTACCCGGCCGCGAAACGCGTGGGCCTAGATGCCGGCCATTGTCC
CCACGACGAGGTTCCTGAGGCCGTTAATTCAGAGCTCCTGAAATGGATCG
AGGAAATGAGCCCGTAAGAGTAAGATTGCGCCCAGATCGTTTTCCTCTTT
TCTTTCTGTTCCTTCCTCGCTGTCCGATCATGATTAGAGAAGCCTGGGCA
TCTTGTTTTTGTACTAGCGGAGAGATGTAGCACTTCTTTTAGTTTTACCT
AATCCTTTTATTTTTTTCAAATTGCTTGTTAATTTGTGCATACAGAGATG
AGATCAGTTCAAAGTACGATAGAGGCTCGAATGAAAGAAGAATGAAGAGA
TAATCTGAAGCGAGAGAAGGAGGCAAGAGAAGACGATGCGAGAGCAAAGA
AAAAGTTGTGTGAAGGTGACATTGGGCCGATTAAAACAAAAAAATTAACA
ATCATGGCAGGTCATACAATCATTCTAGGTTTGTACTAGGAATTTTAGCA
ACGGATCGAAAAATATACGAATATCGTCCTTTTGCTATCAACCTTACGCC
AGCCCGCACACCATAGCATCAGTAATTTTTGAAGTGGCGTTTTCCCAGAA
ATGGTCATGTATTCTTGCTCTGAAGAGCTGGTAAAGGTACCGTAAATCAA
TTCGTTTCGACACAAGCAAGTTGTATGTAACTTTTTCGCTACCAGGAGGT
TGTTCTCTGTGTGACCTGCGATACTGCCAAATCTCCGAATACCATAATCT
CGCAAGACGATTCAATAATAATGCTCGCATTGAATCGTCCAGGAGGTTAT
CCAGTGTCTGCGTGTAGAGCTCTCTTCTGGAAAAGGAGGGGGTGAGTGGC
AAGGGAAAAAGTAAGCTTGAAGTATTGCCGTTCCTTTTTACTCAAATCCG
AGCAGAGCGGTCGTGATTCGTTTCCACCCCTCCTCATCTACAACTCACGC
CACATA

Coding sequence (CDS) from alignment at chr26:107158..110913+

>NO26G00350.1 ID=NO26G00350.1|Name=NO26G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr26:107158..110913+ (Nannochloropsis oceanica)
ATGCCAACATCCCCGCGCCTCTGCCTCCGCAGGGGCAGTCTCCTCCTTCT
TCTTTTCGCAGCGGTAGCGCCCTCCACCTTAGCCTTCCTCCTTCCCTCCC
TACCTCCTTCCCCTTCCACCTCAACCCGCCTCGCCCTCTCCCCTCTCTCC
TCGCCGTCCTCCGACACGCTTAGCACCCTCGAGGCCCCTCCGTTACCCAC
GCTTGCTGTGGATGAGCAGGGACGCTCACGTCTGCCGTGGAAGAAAGAGG
GCTACAGTTACTGGACCTGGCAAGGGAATCAAATTCATTATGTGGCGCTA
GAGGGTGAGAATGCCCGGCAGTCGAACAAACCGCCTATTGTCCTCATCCA
CGGGTTTGGTGCATCGGTCTTTCACTGGCGTTACAACATTCCGGCCCTTG
CGGAGAATCATCGAGTCTACGCCATCGACTTGTTGGGCTTCGGATTGAGC
GCGAAGCCTCTGACGGAGTATAATGCGGAGGTGTGGCGGAATCAGCTGGC
TGCCTTCTTACAAGAGATCGTGGGCGTGGGCGGCTCGCTGGGTGGCCCCA
AGGCCATCGTGGTGGGGAATAGCTTGGGAGGTTACACGGCCCTTGCCACC
GCTGCCTTCCATCCGGAGCTCGTTCAAGCCTGTGCAGTTCTAAACGGCGC
TGGTTCTTTCGATCCTCCCCCTGAAGCGGTCGCTGCTGTGGAGGTGACTC
GTCTGAAGCTAAATAAAACTAGGAGTGGGAAAGGCTATTTGCTGGACGGG
CTCAAGGAGAGATTGGGCCACGCTGCTCGACGCGTGGTGCTGTACTCGGC
CTTCTTCTACACTAAGCAGCCGGGAAGGATCAAGCAGGTGTTGCAACAGG
TGTACCTCAACAAGGACAACGTGGACGACGAGCTGGTGGAATCCATCCGC
TATCCTTCCCTACACCCCAACGCCGCGGAGGTCTTTTGCCGTGTCGTGAC
CCGGACGAGCACCCAAGGCGCTCTGACAACCGTGAACAAACTGCTCTCCA
TGCTAGACATGCCGCTCCTGCTCTTGTGGGGAGATCGCGATCCTTGGATC
AGTCCACGCATGGCCGAGCGCATGCGCGATCTCTACCCGGCCGCGAAACG
CGTGGGCCTAGATGCCGGCCATTGTCCCCACGACGAGGTTCCTGAGGCCG
TTAATTCAGAGCTCCTGAAATGGATCGAGGAAATGAGCCCGTAA

Synonyms

Publications