NO26G00200.1, NO26G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00200.1
Unique NameNO26G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1951
Alignment locationchr26:67232..70436 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:67232..70436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00200.1 vs.
Match: EWM23055.1 (hypothetical protein Naga_101320g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 172.2 bits (435), Expect = 3.400e-39
Identity = 107/191 (56.02%), Postives = 125/191 (65.45%), Query Frame = 0 
Query:    1 MPLLSGLLRLGGFMFSVLAYSYLELVDLSAVGGAEG-----------GLERLWAVTGA----LPPPSVMKQYLMYLPLVTLTILVIGPCVGLSLQGMNAALHHMLLVLAAVCPSPSPSSSHLP-YYAFLLSAAYYWASGG-AGTQDDRVAFGPYESEIRQLLWRHDPSRLHLVDSMIKAYRWK-GAKRLLE 174
            M  L+ LLR G F  SVLAYSYLEL+DLS +    G           G + L A  GA    LPP SVM  YL YLP+  + +L +G CVG S QGMNA LHH LLVLAAV PSPS     LP +  FL SAA YWASGG A  Q D+VAF PYESEIRQLL RHDP++LH VDS+++ Y+W+ G KRLL+
Sbjct:    1 MLFLTKLLRAGAFAVSVLAYSYLELIDLSGLAPGNGIESGHGTENGKGGDFLTASMGAAGITLPPASVMSMYLTYLPIFVVPLLFLGLCVGGSFQGMNAVLHHTLLVLAAVRPSPS-----LPLFLLFLASAAGYWASGGVASEQSDKVAFRPYESEIRQLLLRHDPAQLHRVDSLLEGYQWRGGGKRLLQ 186
The following BLAST results are available for this feature:
BLAST of NO26G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23055.13.400e-3956.02hypothetical protein Naga_101320g2, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00200NO26G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00200.1NO26G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00200.1.cds1NO26G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00200.1.cds2NO26G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00200.1.cds3NO26G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00200.1.cds4NO26G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00200.1.cds5NO26G00200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00200.1.cds6NO26G00200.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00200.1.cds7NO26G00200.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00200.1.cds8NO26G00200.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00200.1 ID=NO26G00200.1|Name=NO26G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1951bp
ACAGTCACCACAGGCCAGCTGCGCGCTGTAATTTTCGATTTTTGGAACGA
CCACTCGTAGCAGCCGGGCCAAGCAACCACGCATTTCCCCCCCCGCGACT
TCCTCCCTTCCGTCGAGCCTCCTGCAGGCCGACCGACGAGAATTCTACAT
CCCCGCAAGGCAGCACCACACCCTTTATCACCATGCCTTTGCTATCTGGT
CTCCTTCGTCTCGGGGGCTTCATGTTTTCAGTCTTGGCATATTCGTACTT
GGAGCTGGTGGACCTCTCTGCTGTCGGAGGAGCAGAGGGAGGGCTGGAGC
GCTTGTGGGCCGTGACAGGGGCCTTACCGCCGCCTAGTGTCATGAAGCAG
TATTTAATGTACTTGCCCCTCGTAACCCTGACCATCCTCGTTATTGGTCC
TTGCGTGGGCCTCTCGCTCCAAGGAATGAATGCCGCCCTCCACCACATGC
TCCTCGTCCTGGCAGCCGTGTGTCCCTCCCCTTCCCCCTCCTCCTCGCAC
TTGCCCTACTACGCTTTTTTGCTCTCAGCTGCCTATTATTGGGCCAGTGG
CGGCGCCGGAACGCAGGATGATCGTGTCGCCTTCGGCCCATACGAGAGTG
AAATTCGTCAGCTGCTCTGGCGCCACGATCCTTCTCGCCTGCACTTGGTC
GACTCCATGATAAAGGCCTACCGGTGGAAGGGAGCCAAACGCCTCCTCGA
GGACCTCCGAGAAGAGTATTCAGAGCATTCTCCCGTCATTCAAACAGACA
ACCGTTACGAATCCCGCCGTCTTTCCCGGCCCCTCTCCTCCTCCACCACT
GCCTCTCGCCGTTCCGCCCCCCGCATGCCACAGCCACCTCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACGGCCCATCC
CAACCTCACCCCTTTCCTCCTCTCCTGCAGCTCTGTCAACCCAGCATAAA
CAGCTGCCCTACATGCCAGACTGCCGCCCCTCCCACGGCCCTCCCTCCCT
CCCTCCCTCCCTTCCCCCTTCCTACTCGCAGCCAGAACAGCAGCAGCAGC
ACCTTTACCCTGAAGACTTTCCCATGTCTGCCCCTGTAGCAGGCCAGCGG
TATTACAGTACTGGCGTAGGGAGTGGGTTCTCTTCCAAACAGCAGCAGCA
CCGACCACAGGAGCAGCAGCAGCAGCAGCAGTACTACTCTCAAGGTCATG
CAGCACGAAGAGGAGAAATATATGGGGACAGGGATTCGAATCCTCCACCG
CCGCCACAGCCAGCACGGAAGGAAGGAGGAGGGGGAGGAGGGGAAGGGGG
AAAGAGCCTGAGCACTACCATGATGAACGCCTCGCAAGCCTACCGGCAAA
GCATCATTGAGCGGCAGCAGCTTCGAACCCAGCGACTCATGCAAGAGCGC
CAATACCAGTACAGATAGAGGAAGGGAAGGGGCGAGGGAGGGAGGAAGGG
AGGGAAGGAGCAAGGGAGAGGGATGTACTTTCGAGAAGCGCACGTGATAA
TGCGGGGAAGGAAAGGGAGAGGGAAGGAGAGAGAGAGAGAGACGGAGGGA
GGATTGGAGGGGGAGATGAGAGCACGGCATTTTGTGTTCAGGGATTTTTA
TGAAAGGATTTATTATTTGAAAGTGTATATGTACGATGTATGCCAAGGAG
AGAGAAAGAGAAAGAGAGAGAGAGAGAGTAAGGAGGAGGAGGAGGAGGAG
GAAAGAGGGGAATTCGGAAAATACGAGAGACGGAAGGGAGGGGTCAACAA
AGATAAAGAAAGTAAGACGATTTGAAAGAGGTCGACGTCTTCAACCTCTC
CCTATTGCTGACCCTCCTCAGCTACGCGCAAGCATACAGCTCTCTCCGGC
CAGATGTCGGGGCGGCGCACCACCCACCCCCACACACAGCTCAGCATCAA
CAACGACAAGTCCCAACACAACAACAACAACATAAACATCCATTAATTAA
G
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protein sequence of NO26G00200.1

>NO26G00200.1-protein ID=NO26G00200.1-protein|Name=NO26G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MPLLSGLLRLGGFMFSVLAYSYLELVDLSAVGGAEGGLERLWAVTGALPP
PSVMKQYLMYLPLVTLTILVIGPCVGLSLQGMNAALHHMLLVLAAVCPSP
SPSSSHLPYYAFLLSAAYYWASGGAGTQDDRVAFGPYESEIRQLLWRHDP
SRLHLVDSMIKAYRWKGAKRLLEDLREEYSEHSPVIQTDNRYESRRLSRP
LSSSTTASRRSAPRMPQPPQQQQQQQQQQQQQQQQQRPIPTSPLSSSPAA
LSTQHKQLPYMPDCRPSHGPPSLPPSLPPSYSQPEQQQQHLYPEDFPMSA
PVAGQRYYSTGVGSGFSSKQQQHRPQEQQQQQQYYSQGHAARRGEIYGDR
DSNPPPPPQPARKEGGGGGGEGGKSLSTTMMNASQAYRQSIIERQQLRTQ
RLMQERQYQYR*
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mRNA from alignment at chr26:67232..70436+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00200.1 ID=NO26G00200.1|Name=NO26G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=3205bp|location=Sequence derived from alignment at chr26:67232..70436+ (Nannochloropsis oceanica)
ACAGTCACCACAGGCCAGCTGCGCGCTGTAATTTTCGATTTTTGGAACGA
CCACTCGTAGCAGCCGGGCCAAGCAACCACGCATTTCCCCCCCCGCGACT
TCCTCCCTTCCGTCGAGCCTCCTGCAGGCCGACCGACGAGAATTCTACAT
CCCCGCAAGGCAGCACCACACCCTTTATCACCATGCCTTTGCTATCTGGT
CTCCTTCGTCTCGGGGGCTTCATGTTTTCAGTCTTGGCATATTCGTACTT
GGAGCTGGTGGACCTCTCTGCTGTCGGAGGAGCAGAGGGAGGGCTGGAGC
GCTTGTGGGCCGTGACAGGGGCCTTACCGCCGCCTAGTGTCATGAAGTGA
GTGAGATGTAAAGAGAAGTTCAGGGAATGAAAAAGAGGAAGGCGCCGCAT
GATGTATGTGTCGCGTTGTGGTTCGTGTCGTATTTACATTTTCCCATACC
TCTTTCCTTCCCTCCCTCCCTCTCCTCCTCCCTCCCTTCCTCCCTACCTT
GTCGGCCCAACAGGCAGTATTTAATGTACTTGCCCCTCGTAACCCTGACC
ATCCTCGTTATTGGTCCTTGCGTGGGCCTCTCGCTCCAAGGAATGAATGC
CGGTAAGGCGGAGGATGGGAGGGTGGGAGGGCGGGAGGGAAGGAAAGTTT
TACATGCTGATAGAGGTCCACGTCCAGATCGACTCTTCTTTCTATCCCTT
TGATTTAATCCCTCCATCATTCCCTCGCTCGCTTCCTTCCCCCAGCCCTC
CACCACATGCTCCTCGTCCTGGCAGCCGTGTGTCCCTCCCCTTCCCCCTC
CTCCTCGCACTTGCCCTACTACGCTTTTTTGCTCTCAGCTGCCTATTATT
GGGCCAGTGGCGGCGCCGGAACGCAGGTTAGAATGCAAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGCTGGCTGGGGGGCTTTCGTCCCGTTCG
TTGGTCGACTGTGGATGGAAGCGGCTGAGACATCGGTAAGACACGGGAGG
GAGGGAGGGAGGGCGGCAAGAAGGATCTCACCTGGGATTCACTGAGCGGT
CTCCTTGCTCTCCTGCCTTGGTCTCTTTACCAACAAATACCTTGGAGCCT
CATCCCCCTTCCTCCCTCCCTCCCTCGCCCCCTCCCTCTTTGGAAAACCA
GGATGATCGTGTCGCCTTCGGCCCATACGAGAGTGAAATTCGTCAGCTGC
TCTGGCGCCACGATCCTTCTCGCCTGCACTTGGTCGACTCCATGATAAAG
GCCTACCGGTGGAAGGGAGCCAAACGCCTCCTCGAGGTGCGTGCCTTCCC
TTCCTCCCTGCCTCTCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCCCCC
CCCCCCCCTTCTCCCCCTCCGTCATCTCGCCACCGCATTCAACTTTCTCG
ATTGCCCCACGACTCTCACGATCCACCTCTCGCCATTTCCCTTTCCTCCC
TCCCCCAGGACCTCCGAGAAGAGTATTCAGAGCATTCTCCCGTCATTCAA
ACAGACAACCGTTACGAATCCCGCCGTCTTTCCCGGCCCCTCTCCTCCTC
CACCACTGCCTCTCGCCGTTCCGCCCCCCGCATGCCACAGCCACCTCAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACGG
CCCATCCCAACCTCACCCCTTTCCTCCTCTCCTGCAGCTCTGTCAACCCA
GCATAAACAGCTGCCCTACATGCCAGACTGCCGCCCCTCCCACGGCCCTC
CCTCCCTCCCTCCCTCCCTTCCCCCTTCCTACTCGCAGCCAGAACAGCAG
CAGCAGCACCTTTACCCTGAAGACTTTCCCATGTCTGCCCCTGTAGCAGG
CCAGCGGTAGGGGGGAGGGAGGGAGGGAGGGCGAAAAAGAACAAGCGTGC
AAAAAAGCTGGACGACAAGGAATTCGACGTTCTCACTTCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTAGGTATTACAGTACTGGCGTAGGGAGTGGGT
TCTCTTCCAAACAGCAGCAGCACCGACCACAGGAGCAGCAGCAGCAGCAG
CAGTACTACTCTCAAGGTCATGCAGCACGAAGAGGAGAAATATATGGTAA
GGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGG
CGGGAGATGCCGGCAGCAGGACGTCACAGGCGCAATCCATCACATTTGGC
AGGGGACAGGGATTCGAATCCTCCACCGCCGCCACAGCCAGCACGGAAGG
AAGGAGGAGGGGGAGGAGGGGAAGGGGGAAAGAGCCTGAGCACTACCATG
ATGAACGCCTCGCAAGCCTACCGGGTATGAACTAACCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTTTCTCTCTTCATCACTCCCGTCCCTCCTGTCTCTCCCCTCCCCCATC
CCCTCCTTCCGTCTGGCTTGAATCAATAATTGAAGTCCCGGAGACTGACA
TCTCGTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCTTGTGCAG
CAAAGCATCATTGAGCGGCAGCAGCTTCGAACCCAGCGACTCATGCAAGA
GCGCCAATACCAGTACAGATAGAGGAAGGGAAGGGGCGAGGGAGGGAGGA
AGGGAGGGAAGGAGCAAGGGAGAGGGATGTACTTTCGAGAAGCGCACGTG
ATAATGCGGGGAAGGAAAGGGAGAGGGAAGGAGAGAGAGAGAGAGACGGA
GGGAGGATTGGAGGGGGAGATGAGAGCACGGCATTTTGTGTTCAGGGATT
TTTATGAAAGGATTTATTATTTGAAAGTGTATATGTACGATGTATGCCAA
GGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGTAAGGAGGAGGAGGAGGA
GGAGGAAAGAGGGGAATTCGGAAAATACGAGAGACGGAAGGGAGGGGTCA
ACAAAGATAAAGAAAGTAAGACGATTTGAAAGAGGTCGACGTCTTCAACC
TCTCCCTATTGCTGACCCTCCTCAGCTACGCGCAAGCATACAGCTCTCTC
CGGCCAGATGTCGGGGCGGCGCACCACCCACCCCCACACACAGCTCAGCA
TCAACAACGACAAGTCCCAACACAACAACAACAACATAAACATCCATTAA
TTAAG
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Coding sequence (CDS) from alignment at chr26:67232..70436+

>NO26G00200.1 ID=NO26G00200.1|Name=NO26G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at chr26:67232..70436+ (Nannochloropsis oceanica)
ATGCCTTTGCTATCTGGTCTCCTTCGTCTCGGGGGCTTCATGTTTTCAGT
CTTGGCATATTCGTACTTGGAGCTGGTGGACCTCTCTGCTGTCGGAGGAG
CAGAGGGAGGGCTGGAGCGCTTGTGGGCCGTGACAGGGGCCTTACCGCCG
CCTAGTGTCATGAAGCAGTATTTAATGTACTTGCCCCTCGTAACCCTGAC
CATCCTCGTTATTGGTCCTTGCGTGGGCCTCTCGCTCCAAGGAATGAATG
CCGCCCTCCACCACATGCTCCTCGTCCTGGCAGCCGTGTGTCCCTCCCCT
TCCCCCTCCTCCTCGCACTTGCCCTACTACGCTTTTTTGCTCTCAGCTGC
CTATTATTGGGCCAGTGGCGGCGCCGGAACGCAGGATGATCGTGTCGCCT
TCGGCCCATACGAGAGTGAAATTCGTCAGCTGCTCTGGCGCCACGATCCT
TCTCGCCTGCACTTGGTCGACTCCATGATAAAGGCCTACCGGTGGAAGGG
AGCCAAACGCCTCCTCGAGGACCTCCGAGAAGAGTATTCAGAGCATTCTC
CCGTCATTCAAACAGACAACCGTTACGAATCCCGCCGTCTTTCCCGGCCC
CTCTCCTCCTCCACCACTGCCTCTCGCCGTTCCGCCCCCCGCATGCCACA
GCCACCTCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGC
AACAGCAACGGCCCATCCCAACCTCACCCCTTTCCTCCTCTCCTGCAGCT
CTGTCAACCCAGCATAAACAGCTGCCCTACATGCCAGACTGCCGCCCCTC
CCACGGCCCTCCCTCCCTCCCTCCCTCCCTTCCCCCTTCCTACTCGCAGC
CAGAACAGCAGCAGCAGCACCTTTACCCTGAAGACTTTCCCATGTCTGCC
CCTGTAGCAGGCCAGCGGTATTACAGTACTGGCGTAGGGAGTGGGTTCTC
TTCCAAACAGCAGCAGCACCGACCACAGGAGCAGCAGCAGCAGCAGCAGT
ACTACTCTCAAGGTCATGCAGCACGAAGAGGAGAAATATATGGGGACAGG
GATTCGAATCCTCCACCGCCGCCACAGCCAGCACGGAAGGAAGGAGGAGG
GGGAGGAGGGGAAGGGGGAAAGAGCCTGAGCACTACCATGATGAACGCCT
CGCAAGCCTACCGGCAAAGCATCATTGAGCGGCAGCAGCTTCGAACCCAG
CGACTCATGCAAGAGCGCCAATACCAGTACAGATAG
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Synonyms
Publications