NO26G00190.1, NO26G00190.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO26G00190.1
Unique Name	NO26G00190.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2133
Alignment location	chr26:63327..67109 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr26	genome	chr26:63327..67109 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO26G00190.1 vs.
Match: ORX98264.1 (WD40 repeat-like protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 279.3 bits (713), Expect = 2.300e-71
Identity = 145/311 (46.62%), Postives = 189/311 (60.77%), Query Frame = 0

Query:  134 SLDTQHEDMVHDAQLDYYGKKLATCSSDRTIKIFEVNNDHTSSSPPYTIQQHVGPVWEIAWAHPRWGSLLASASYDGMVLIHRENKDKGTWDTGIVHQGVENQSVNSIAFGPAEDGLLLACASSDGFLYLYHHTDDSRWEELVRLRTSTLGTNSVSW--ANTPQG--------EGEERVWRLATGSCDNEVRVWTGGPSKRTEAEWVCDILQDGHKDWVRDVAWAPPTGLTALMLASAGEDGKVFIWTQAPGSNHWKKATVALQQASGTAPSPVWRVSWSLTGNVLAVSSGDQHVALYKQRLNGEWAAWEE 435
            S DTQHEDM+HDAQ+DYYGK+LATCSSDRTI+IFEV  ++        +Q H GPVW++AWAHP++GS+LAS SYDG V I +E   +G W T I        SVNSIA+ P E G ++ACASSDG + +    DDS W+  V L+   +G N+V+W  A TP G             V R ATG CDN++++W+      T   W  +   +GH DW+RD+AWAP  GL    LAS  +D  V IWT+   +  W K  +  ++     P  VWRVSWSL+GN+LAVS GD  V L+K+ L G+W    E
Sbjct:   11 SFDTQHEDMIHDAQMDYYGKRLATCSSDRTIRIFEVEGENQRLI--QVLQGHEGPVWQVAWAHPKFGSILASCSYDGRVFIWKE--VEGNW-TKIKEHTHHTSSVNSIAWAPHELGPIIACASSDGKVSVLTFRDDSTWDAQV-LQADAIGCNAVAWAPATTPGGLIQVSGAAPNANSVKRFATGGCDNQIKIWSWREDTNT---WKEEDSLEGHTDWIRDLAWAPNIGLPKTYLASCSQDKTVLIWTKDSPNGSWTKKALKAEK----FPDVVWRVSWSLSGNILAVSCGDNKVTLWKENLKGDWECVSE 308

The following BLAST results are available for this feature:

BLAST of NO26G00190.1 vs.

BLAST of NO26G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
ORX98264.1	2.300e-71	46.62	WD40 repeat-like protein [Basidiobolus meristospor...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO26G00190	NO26G00190	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO26G00190.1	NO26G00190.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO26G00190.1.cds1	NO26G00190.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00190.1.cds2	NO26G00190.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00190.1.cds3	NO26G00190.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00190.1.cds4	NO26G00190.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00190.1.cds5	NO26G00190.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00190.1.cds6	NO26G00190.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00190.1.cds7	NO26G00190.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00190.1.cds8	NO26G00190.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00190.1.cds9	NO26G00190.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr26:63327..67109-
coding sequence from alignment at chr26:63327..67109-

mRNA sequence

>NO26G00190.1 ID=NO26G00190.1|Name=NO26G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2133bp
AGTCGTTTCATGCCTCTCTTTGATCTCTAAATCGGGCTTGGCGAGTACAT
TTCTGAGAGGACAGACAGACACGGAGCCTGTTTTATGTGCATTTACCGCC
ACTACCCCAGTGCGAGCATTGTGCATCTCTGCACGCGCTAGTGTGTGGTC
TTTGCCTTTGTCTTCGTTTTCAAAGCCACTCACCCTCCCCCACCCCATCA
TCATCAACACCCACAGGAGAAGCGGCTCAAAGCAAGTTTCCCCCCCACTC
CATCCGCAGCAACGATGGACCCCTACGCTCACCAGCACCACCACCAGCAG
CAACAAGGCTATTACGGCCAGCAGCAGGCGTCGCGCCCGCAGCAGCAACC
CGCGTACGGAGGTGGCTACCCTCCCCAGCAGCAGCAGCAGCAGCAGTACC
AGCAGCAGCAGGCGCCTTCGGCCTACGCCTCCTACCCGCCGCAGCCACAA
GCCGCCTACCCACCCCAGCAGCAGCCATTATACCAGCAGCAGCAACCACA
ACAGCAGCAATATGCACCACTCCAGCAGCAGCCGCAGCAGCCGCAGCAGC
CGCAGCAGCAGGCTTACCAACCTGCGCAGCTGCAGCAGCAGGAGGTATCT
CAACAGGCGAGCCTCCCTCCTGCTCTGCCGGCAAAGATGACCCCCGGCCC
CGGTGGCGACGTGTCTCTCGACACGCAGCACGAGGACATGGTGCATGATG
CCCAACTGGATTACTACGGGAAGAAGCTTGCCACGTGTTCCAGCGACCGG
ACGATCAAGATCTTCGAGGTCAACAACGACCACACCTCCTCCTCCCCTCC
GTACACCATCCAGCAGCACGTCGGCCCTGTCTGGGAAATCGCCTGGGCAC
ATCCGCGTTGGGGTAGCCTGCTGGCTTCTGCCTCTTACGATGGCATGGTC
CTCATCCACCGCGAGAACAAAGACAAGGGCACCTGGGACACGGGTATCGT
CCATCAGGGCGTGGAGAACCAGAGTGTCAACAGCATTGCCTTCGGCCCCG
CGGAGGACGGTCTGCTTCTGGCCTGCGCCTCGTCCGACGGCTTCCTCTAC
CTCTACCACCACACCGACGACTCTCGCTGGGAGGAGCTGGTGCGTCTCCG
CACCTCCACCCTCGGCACTAACAGCGTATCCTGGGCGAACACTCCGCAGG
GCGAGGGGGAGGAGCGAGTGTGGCGCCTGGCCACGGGGAGCTGCGACAAC
GAAGTCCGCGTTTGGACCGGCGGTCCCTCCAAACGGACCGAGGCCGAGTG
GGTCTGTGACATTCTTCAGGACGGGCACAAGGATTGGGTGCGTGACGTGG
CGTGGGCTCCTCCCACGGGCTTGACGGCTCTCATGCTGGCGTCGGCGGGC
GAGGACGGGAAGGTGTTCATCTGGACACAGGCCCCGGGCTCCAACCACTG
GAAGAAGGCCACTGTCGCGCTGCAGCAGGCGTCGGGCACTGCGCCTTCCC
CGGTTTGGAGGGTTAGCTGGTCCCTGACCGGCAACGTGCTGGCGGTGTCG
TCCGGAGACCAACACGTCGCCTTGTACAAGCAGAGGCTTAACGGGGAGTG
GGCGGCGTGGGAAGAGACGCTGGGCGGGGGGGAGGGATGGAAGAAGGTCG
ACTCGGCGGCGGGTCCTCCCCCGACGGCGACGGGGAATGCCTCTCCTGCC
TTGCCGAGCAGTTGAGTTGAGAGGTGTCGAGCAGTTGAGTTGAGAAGAAG
GGAAAGGAGGGAGGGAGGGAGGAGGGAAGATTATGATGGTGGTGGTGGCG
GCCTAGAAATATGATGGGGATTGATTTCAAAGGGGCAACATCTGAGCGAG
AAGGAAGAGAGGGAAGGTCAACACCAGCATCATGGAGACAACAATTATCA
GGAGGAAACCTGAAAATGTCGGCGGGAAGAAGAAAGAAGAGGGGAACAGA
AAGGGATAGGAAAAGAAAGGGAAAGCAAATCCAAAACGAGAAAGCCAAAT
GAAAAAGAGCGAGAAGAATGCACAAAGTGGATGGAGCGGGAAGTGAGGGA
GGGAGGGGAACAGCCGCAACAGAAACTATAACTATGAAAGAAGAAAGACG
AGGAAGGATTTAGACCCCATACTCTCAAGTTGTCTGCAGACGCACACAAG
TCGCCCTCCGTAATGATGGCAAGCTCGATTAAA

protein sequence of NO26G00190.1

>NO26G00190.1-protein ID=NO26G00190.1-protein|Name=NO26G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MDPYAHQHHHQQQQGYYGQQQASRPQQQPAYGGGYPPQQQQQQQYQQQQA
PSAYASYPPQPQAAYPPQQQPLYQQQQPQQQQYAPLQQQPQQPQQPQQQA
YQPAQLQQQEVSQQASLPPALPAKMTPGPGGDVSLDTQHEDMVHDAQLDY
YGKKLATCSSDRTIKIFEVNNDHTSSSPPYTIQQHVGPVWEIAWAHPRWG
SLLASASYDGMVLIHRENKDKGTWDTGIVHQGVENQSVNSIAFGPAEDGL
LLACASSDGFLYLYHHTDDSRWEELVRLRTSTLGTNSVSWANTPQGEGEE
RVWRLATGSCDNEVRVWTGGPSKRTEAEWVCDILQDGHKDWVRDVAWAPP
TGLTALMLASAGEDGKVFIWTQAPGSNHWKKATVALQQASGTAPSPVWRV
SWSLTGNVLAVSSGDQHVALYKQRLNGEWAAWEETLGGGEGWKKVDSAAG
PPPTATGNASPALPSS*

mRNA from alignment at chr26:63327..67109-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO26G00190.1 ID=NO26G00190.1|Name=NO26G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=3783bp|location=Sequence derived from alignment at chr26:63327..67109- (Nannochloropsis oceanica)
AGTCGTTTCATGCCTCTCTTTGATCTCTAAATCGGGCTTGGCGAGTACAT
TTCTGAGAGGACAGACAGACACGGAGCCTGTTTTATGTGCATTTACCGCC
ACTACCCCAGTGCGAGCATTGTGCATCTCTGCACGCGCTAGTGTGTGGTC
TTTGCCTTTGTCTTCGTTTTCAAAGCCACTCACCCTCCCCCACCCCATCA
TCATCAACACCCACAGGAGAAGCGGCTCAAAGCAAGTTTCCCCCCCACTC
CATCCGCAGCAACGATGGACCCCTACGCTCACCAGCACCACCACCAGCAG
CAACAAGGCTATTACGGCCAGCAGCAGGCGTCGCGCCCGCAGCAGCAACC
CGCGTACGGAGGTGGCTACCCTCCCCAGCAGCAGCAGCAGCAGCAGTACC
AGCAGCAGCAGGCGCCTTCGGCCTACGCCTCCTACCCGCCGCAGCCACAA
GCCGCCTACCCACCCCAGCAGCAGCCATTATACCAGCAGCAGCAACCACA
ACAGCAGCAATATGCACCACTCCAGCAGCAGCCGCAGCAGCCGCAGCAGC
CGCAGCAGCAGGCTTACCAACCTGCGCAGCTGCAGCAGCAGGAGGTATCT
CAACAGGCGAGCCTCCCTCCTGCTCTGCCGGCAAAGATGACCCCCGGCCC
CGGTGGCGACGTGTCTCTCGACACGCAGCACGAGGACATGGTGCATGATG
CCCAACTGGATTACTACGGGAAGAAGCTTGCCACGTGTTCCAGCGACCGG
ACGATCAAGGTATGTCCTTCGCTCCCTTCCTCCTTTCCTCCCTTCCTCCC
TCCCCATTCCCTCCCCTCGCCACCCTTTGTCAATTTCTACAAGCATCCCT
CCTTCACTTGTTCAACCTGACGTATCCGTTTGCTTTGACCGTAAAGAAAG
AGGGAAAGAAATGGCAAACGCCTGTACTTTTTTTTTCATTTTTTAAATCA
GACCCTCTCACCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCCCGGCCCCC
CTTTTCATGCAAGATCTTCGAGGTCAACAACGACCACACCTCCTCCTCCC
CTCCGTACACCATCCAGCAGCACGTCGGCCCTGTCTGGGAAATCGCCTGG
GCACATCCGCGTTGGGGTAGCCTGCTGGCTTCTGCCTCTTACGATGGCAT
GGTATGTTCCTTACCCTCCCTCCCTCCCTTCTTCCCTCCCTCCCTCCCTC
TCTCCTTCTTTTCCTTTCTTCTTGCCTCGTACGCCCATCGAGCAGATCCC
AGGAGATGCTGTGTCTGTGGCTGCCTCTTTTTCCCTATTTCTCATTTTCC
TTCTTGTGGGTCGTCTGTCCCCCTCCACTCACGTCTCCCTCCCTCCCTCC
CTCCCTCCCCAGGTCCTCATCCACCGCGAGAACAAAGACAAGGGCACCTG
GGACACGGGTATCGTCCATCAGGGCGTGGAGAACCAGAGTGTCAACAGCA
TTGCCTTCGTGAGTTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCC
TTCCATTTTCGTTCTTACAATTGCCCGAGCGTGGCACTCATCCTCTCTTT
CCCTCCCTCCCCCCTCCCTCCCTCCCTCTCTGCAGGGCCCCGCGGAGGAC
GGTCTGCTTCTGGCCTGCGCCTCGTCCGACGGCTTCCTCTACCTCTACCA
CCACACCGACGGTGAGCGAACCCTTCCCTCCCTCCCTCCCTCCCCCTCCT
TTATTGCCCATTTTTCATATTTCCCACCGACCTTCTCTCCCTCCCTCCCT
CCCTTCCTCGTAGACTCTCGCTGGGAGGAGCTGGTGCGTCTCCGCACCTC
CACCCTCGGCACTAACAGCGTATCCTGGGCGAACACTCCGCAGGGCGAGG
GGGAGGTAGGGAGGGAGGGAGGGAGGGAAGGAGGGATGGGCAGGGGACGA
TCGACAGCGAGAGAGAGAGATCGAGACAGAGAGAGACAGACAGACAGCAA
CTCAGAGGCAGAGGGAGCGACCATCACCGAGAGAGAAAGAGAGGGATCGA
GAGAGACAGACAGCGACAATACTAAGCCAAAAGGCACCTGCACTGCCCCC
CCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGAGC
GAGTGTGGCGCCTGGCCACGGGGAGCTGCGACAACGAAGTCCGCGTTTGG
ACCGGCGGTCCCTCCAAACGGACCGAGGCCGAGTGGGTCTGTGACATTCT
TCAGGTAATCCCTCCCTCCCTCCCTCCCTCTTCTTCTCCTCTTTCTTCCC
TCCTCCCATCCTTACTGGCGCTATGTCTCATCCTTTGATATCGTTTTCTG
GTCTCCTTATTTATCCGCCCTTACCGTGCCCCTGTCCACTCACCATTACC
GCACCACAGCTCATCTTCCCTCCCTCTCTCCCTACCTCCCTTCCTCTCAC
TCACTCCCTCTCTTTCTCTCTCTCTTCTCTCTCTCTGACGCGCTCTTCCT
CCCTCTCTCCCTCCCTCCCTCCAGGACGGGCACAAGGATTGGGTGCGTGA
CGTGGCGTGGGCTCCTCCCACGGGCTTGACGGCTCTCATGCTGGCGTCGG
CGGGCGAGGACGGGAAGGTACGAACGGACGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGAGGATTCTGCATGGAAGCGTGTGTGTTGGTGCCTCCTACCCT
TGTCTGTCGGTGGGAGAAGGAGCTGGGGAAAGGAAGGAGGGCGAAAGGAA
GGGAGGGAGAGAGGAATAATTCACAATGAAAGAAAAAATACAAGGGGAAA
GGGAGGGAGGGAGGGACGGATAGACGGATACTTCCATGTCTGTCTTTTGA
ATGGGTTGATAGCTCGACGTCCATTCACTCATGCTTCCCTCTTTCCTCCC
TTTCCCGCCTCCCTCCAGGTGTTCATCTGGACACAGGCCCCGGGCTCCAA
CCACTGGAAGAAGGCCACTGTCGCGCTGCAGCAGGCGTCGGGCACTGCGC
CTTCCCCGGTTTGGAGGGTTAGCTGGTAAGGAGAGAGGGAGGGAAGGAGG
GAGGAGTGGGGGAGCGGGAAGGTATTTTTACAGATTTTCTTTTTTTGGGG
GGCTATGGCGGGCCGAAGAGGCGTCACGACATATTCACCCCTCCTTCCCT
CCCTCCCTCCTTCCCTCAGGTCCCTGACCGGCAACGTGCTGGCGGTGTCG
TCCGGAGACCAACACGTCGCCTTGTACAAGCAGAGGCTTAACGGGGAGTG
GGCGGCGTGGGAAGAGACGCTGGGCGGGGGGGAGGGATGGAAGAAGGTCG
ACTCGGCGGCGGGTCCTCCCCCGACGGCGACGGGGAATGCCTCTCCTGCC
TTGCCGAGCAGTTGAGTTGAGAGGTGTCGAGCAGTTGAGTTGAGAAGAAG
GGAAAGGAGGGAGGGAGGGAGGAGGGAAGATTATGATGGTGGTGGTGGCG
GCCTAGAAATATGATGGGGATTGATTTCAAAGGGGCAACATCTGAGCGAG
AAGGAAGAGAGGGAAGGTCAACACCAGCATCATGGAGACAACAATTATCA
GGAGGAAACCTGAAAATGTCGGCGGGAAGAAGAAAGAAGAGGGGAACAGA
AAGGGATAGGAAAAGAAAGGGAAAGCAAATCCAAAACGAGAAAGCCAAAT
GAAAAAGAGCGAGAAGAATGCACAAAGTGGATGGAGCGGGAAGTGAGGGA
GGGAGGGGAACAGCCGCAACAGAAACTATAACTATGAAAGAAGAAAGACG
AGGAAGGATTTAGACCCCATACTCTCAAGTTGTCTGCAGACGCACACAAG
TCGCCCTCCGTAATGATGGCAAGCTCGATTAAA

Coding sequence (CDS) from alignment at chr26:63327..67109-

>NO26G00190.1 ID=NO26G00190.1|Name=NO26G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr26:63327..67109- (Nannochloropsis oceanica)
ATGGACCCCTACGCTCACCAGCACCACCACCAGCAGCAACAAGGCTATTA
CGGCCAGCAGCAGGCGTCGCGCCCGCAGCAGCAACCCGCGTACGGAGGTG
GCTACCCTCCCCAGCAGCAGCAGCAGCAGCAGTACCAGCAGCAGCAGGCG
CCTTCGGCCTACGCCTCCTACCCGCCGCAGCCACAAGCCGCCTACCCACC
CCAGCAGCAGCCATTATACCAGCAGCAGCAACCACAACAGCAGCAATATG
CACCACTCCAGCAGCAGCCGCAGCAGCCGCAGCAGCCGCAGCAGCAGGCT
TACCAACCTGCGCAGCTGCAGCAGCAGGAGGTATCTCAACAGGCGAGCCT
CCCTCCTGCTCTGCCGGCAAAGATGACCCCCGGCCCCGGTGGCGACGTGT
CTCTCGACACGCAGCACGAGGACATGGTGCATGATGCCCAACTGGATTAC
TACGGGAAGAAGCTTGCCACGTGTTCCAGCGACCGGACGATCAAGATCTT
CGAGGTCAACAACGACCACACCTCCTCCTCCCCTCCGTACACCATCCAGC
AGCACGTCGGCCCTGTCTGGGAAATCGCCTGGGCACATCCGCGTTGGGGT
AGCCTGCTGGCTTCTGCCTCTTACGATGGCATGGTCCTCATCCACCGCGA
GAACAAAGACAAGGGCACCTGGGACACGGGTATCGTCCATCAGGGCGTGG
AGAACCAGAGTGTCAACAGCATTGCCTTCGGCCCCGCGGAGGACGGTCTG
CTTCTGGCCTGCGCCTCGTCCGACGGCTTCCTCTACCTCTACCACCACAC
CGACGACTCTCGCTGGGAGGAGCTGGTGCGTCTCCGCACCTCCACCCTCG
GCACTAACAGCGTATCCTGGGCGAACACTCCGCAGGGCGAGGGGGAGGAG
CGAGTGTGGCGCCTGGCCACGGGGAGCTGCGACAACGAAGTCCGCGTTTG
GACCGGCGGTCCCTCCAAACGGACCGAGGCCGAGTGGGTCTGTGACATTC
TTCAGGACGGGCACAAGGATTGGGTGCGTGACGTGGCGTGGGCTCCTCCC
ACGGGCTTGACGGCTCTCATGCTGGCGTCGGCGGGCGAGGACGGGAAGGT
GTTCATCTGGACACAGGCCCCGGGCTCCAACCACTGGAAGAAGGCCACTG
TCGCGCTGCAGCAGGCGTCGGGCACTGCGCCTTCCCCGGTTTGGAGGGTT
AGCTGGTCCCTGACCGGCAACGTGCTGGCGGTGTCGTCCGGAGACCAACA
CGTCGCCTTGTACAAGCAGAGGCTTAACGGGGAGTGGGCGGCGTGGGAAG
AGACGCTGGGCGGGGGGGAGGGATGGAAGAAGGTCGACTCGGCGGCGGGT
CCTCCCCCGACGGCGACGGGGAATGCCTCTCCTGCCTTGCCGAGCAGTTG
A

Synonyms

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