NO26G00170.6, NO26G00170.6 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00170.6
Unique NameNO26G00170.6
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1448
Alignment locationchr26:55726..59737 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:55726..59737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00170.6 vs.
Match: EWM23051.1 (mitochondrial pyruvate dehydrogenase kinase [Nannochloropsis gaditana])

HSP 1 Score: 639.8 bits (1649), Expect = 5.200e-180
Identity = 308/366 (84.15%), Postives = 333/366 (90.98%), Query Frame = 0 
Query:    1 MGWYAGYVEELLAFPKPMDAEQEYDFTCLLASILCDHTSVPRALAHGIQEYRADMSNEDLLDDPGRDAIEQTLTGFYTARIGLRFLVEHHIVSNNAREGYSGIIASNCSPHQISQAAAADATRLCRAALGNAPPIRIIGKEDDTFCYIPSHLYYMVTEALKNSCRAVVEKHDPIYQAAAREVAPSRHLDQMLRAEALRQAQARVNPAELPPIKVVVAMGEEDVTIKVADEGGGVPRSDLGLLWTFFYTTFPPSIPSSPAPLAAGGAGGGSLDENVTVTNAAGSAASSPFTFPNVGTEPVLAGHGMGLPLSRIYARYFGGDLEVKSLEGFGMDSYLHLCKLGDRCEDLGLQVMRSPAGRDSTPTEAA 367
            MGWYAGYVEEL AFPKPMD+EQEYDFTCLLASILCDHTS+PRALAHGIQEYRADMS EDLL DP R++IEQTLTGFYTARIGLRFLVEHHIVSN+AREGYSGIIAS+CSP Q++ AAAADA RLCRAALGNAP +R IG + D FCY+PSHLYYM+ E LKNSCRAVVEKHDPIY+AAA EV+PS  LDQ +R EA ++A AR  P ELPP+KV+VAMGEEDVTIKVADEGGGVPRSDL LLWTFFYTTFPPS PSSPAPL  G AGGGSLDENVTVTN AG+ ++ PFTFPNVGTEPVLAGHGMGLPLSRIYARYFGGDLEVKSLEGFGMDSYLHLCKLGD+CED+GLQVMRSPAGRDSTPTE +
Sbjct:  113 MGWYAGYVEELQAFPKPMDSEQEYDFTCLLASILCDHTSIPRALAHGIQEYRADMSYEDLLLDPDRESIEQTLTGFYTARIGLRFLVEHHIVSNDAREGYSGIIASHCSPRQVATAAAADAERLCRAALGNAPTVRTIGTDKDDFCYVPSHLYYMIVETLKNSCRAVVEKHDPIYRAAALEVSPSTLLDQRIRLEARQKAFARATPTELPPVKVIVAMGEEDVTIKVADEGGGVPRSDLRLLWTFFYTTFPPSFPSSPAPLPGGRAGGGSLDENVTVTNPAGNVSAGPFTFPNVGTEPVLAGHGMGLPLSRIYARYFGGDLEVKSLEGFGMDSYLHLCKLGDKCEDIGLQVMRSPAGRDSTPTETS 478
The following BLAST results are available for this feature:
BLAST of NO26G00170.6 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23051.15.200e-18084.15mitochondrial pyruvate dehydrogenase kinase [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00170NO26G00170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00170.6NO26G00170.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00170.6.cds1NO26G00170.6.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds2NO26G00170.6.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds3NO26G00170.6.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds4NO26G00170.6.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds5NO26G00170.6.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds6NO26G00170.6.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds7NO26G00170.6.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds8NO26G00170.6.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds9NO26G00170.6.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds10NO26G00170.6.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds11NO26G00170.6.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds12NO26G00170.6.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00170.6.cds13NO26G00170.6.cds13Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00170.6 ID=NO26G00170.6|Name=NO26G00170.6|organism=Nannochloropsis oceanica|type=mRNA|length=1448bp
GCCATTCTCGACTCTCCGCCCATCCCTCCCCTCTTCCCTACTTCCCTCCG
TCCCTCCTTTCGTCCCTCCCTCCTTCCCTTCCTATTTCCCCTCCAGGTAT
TCAGAACGTGATGGGCTGGTACGCGGGCTACGTAGAGGAGCTTTTGGCGT
TCCCCAAGCCCATGGACGCAGAGCAGGAATACGATTTCACCTGTCTCCTG
GCCTCCATCCTCTGTGACCACACGTCGGTGCCACGGGCCTTAGCACACGG
CATACAGGAGTACAGAGCCGACATGAGCAATGAAGATCTGCTGGATGACC
CGGGGAGGGATGCAATCGAGCAGACACTGACGGGCTTCTACACCGCCAGA
ATAGGGCTCCGCTTCCTCGTCGAGCATCATATCGTCAGCAACAATGCCCG
CGAGGGCTACTCCGGGATCATCGCCTCCAACTGCTCCCCCCACCAAATCT
CCCAAGCCGCCGCCGCCGACGCCACGCGGCTCTGTCGAGCCGCCTTAGGG
AACGCTCCTCCCATACGCATCATCGGCAAGGAAGACGACACCTTCTGCTA
CATTCCCTCCCACCTCTACTATATGGTCACCGAGGCCCTCAAGAACTCCT
GTCGCGCAGTGGTCGAGAAGCACGATCCAATTTATCAAGCAGCAGCTAGA
GAGGTCGCCCCCTCCCGCCACCTGGACCAAATGTTGAGAGCAGAGGCTCT
CAGACAGGCTCAAGCTCGTGTCAACCCGGCAGAACTGCCCCCAATCAAAG
TAGTGGTGGCCATGGGCGAGGAGGACGTCACGATCAAGGTGGCGGACGAA
GGCGGCGGAGTCCCTCGGTCTGACTTAGGCCTGCTCTGGACCTTCTTCTA
CACCACGTTCCCTCCCTCTATCCCTTCCTCCCCCGCGCCCTTGGCAGCAG
GAGGGGCCGGAGGGGGCTCATTGGACGAGAATGTGACCGTGACGAACGCA
GCAGGCAGCGCGGCTTCCTCTCCTTTCACTTTCCCCAACGTCGGCACCGA
GCCTGTACTAGCGGGGCATGGGATGGGCCTTCCCCTTTCTCGGATCTACG
CCCGCTACTTCGGCGGAGACCTGGAGGTTAAGTCTCTAGAGGGTTTCGGG
ATGGACTCCTATCTCCATCTCTGCAAACTGGGGGACCGCTGCGAAGACCT
GGGGTTGCAGGTTATGCGCAGCCCAGCGGGTCGCGATAGTACCCCGACGG
AGGCCGCACGAAAAATTTCTTAGCGTAGCGGACATGAAAAGGAGGGGAGA
AGAGAGGAGGTGTGTGAGTGGGAAGGCGGAAAGATACGAGTACTGAGTGA
AGGGATAGGGGCACACACAATATCGTCTAGGCTTCTTTCTTCCGCCTGCA
TGTCAGCCTGCTTCGACTGAACGTAAGATGCCCATGCACAATTATGAAGG
AAAATTGCGAATGAAATAATGAGCGAGATTTTCTGTATCTTTGTCGTT
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protein sequence of NO26G00170.6

>NO26G00170.6-protein ID=NO26G00170.6-protein|Name=NO26G00170.6|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MGWYAGYVEELLAFPKPMDAEQEYDFTCLLASILCDHTSVPRALAHGIQE
YRADMSNEDLLDDPGRDAIEQTLTGFYTARIGLRFLVEHHIVSNNAREGY
SGIIASNCSPHQISQAAAADATRLCRAALGNAPPIRIIGKEDDTFCYIPS
HLYYMVTEALKNSCRAVVEKHDPIYQAAAREVAPSRHLDQMLRAEALRQA
QARVNPAELPPIKVVVAMGEEDVTIKVADEGGGVPRSDLGLLWTFFYTTF
PPSIPSSPAPLAAGGAGGGSLDENVTVTNAAGSAASSPFTFPNVGTEPVL
AGHGMGLPLSRIYARYFGGDLEVKSLEGFGMDSYLHLCKLGDRCEDLGLQ
VMRSPAGRDSTPTEAARKIS*
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mRNA from alignment at chr26:55726..59737+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00170.6 ID=NO26G00170.6|Name=NO26G00170.6|organism=Nannochloropsis oceanica|type=mRNA|length=4012bp|location=Sequence derived from alignment at chr26:55726..59737+ (Nannochloropsis oceanica)
GCCATTCTCGACTCTCCGCCCATCCCTCCCCTCTTCCCTACTTCCCTCCG
TCCCTCCTTTCGTCCCTCCCTCCTTCCCTTCCTATTTCCCCTCCAGGTAT
TCAGAACGTGATGGGCTGGTACGCGGGCTACGTAGAGGAGCTTTTGGCGT
TCCCCAAGCCCATGGACGCAGAGCAGGTAGTTGGGGAGGGAGGGAGGGAG
GGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGTGTGATGGGCCTAATGGGAGGTAGGGGGGAGGGGACGGGGGGAGGA
CAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGATGTCGAGTTTGATAAGAG
CTGCTCCCTTGTCTCGCCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCTCCCCTTCTTTCCTAGCTCCCTAAGTTGGACGATAATTTGAACAGC
ATTCTTTCTTCGATGCTACGTGGCGCTCACCTTGATATCTTTCCCTCTCT
TCCCTCCCTTCCTCCTTCTCTAGGAATACGATTTCACCTGTCTCCTGGCC
TCCATCCTCTGTGACCACACGTCGGTGCCACGGGCCTTAGCACACGGTAA
GGAAGGGAGGGAGAGAGGGAGGGAGGGGAAGAAGGTGGGAAGTTGAAGGG
AAAGGGAGGGAGGGAGGAGGGACGGGATGAAAGGAGAGTCAAAGACTTAT
TCTTGTTCACGTGATTGTAATCTAATTTCTATTTCTCTAATTTACTTATT
TCGTTTTAATTCACAGATTGATTCATGTGTTTATCAATTCTCTCTGTTGT
CCCTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTATCAAT
TCTCTCTGTTGTCCCTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGAT
GTGTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTATCAATTCTCTCT
GTTGTCCCTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTA
TCAATTCTCTCTGTTGTCCCTGATGTGTTTATCAATTCTCTCTGTTGTCC
CTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTATCAATTC
TCTCTGTTGTCCCTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGATGT
GTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTATCAATTCTCTCTGT
TGTCCCTGATGTGTTTATCAATTCTCTCTGTTGTCCCTGATGTGTTTATC
AATTCTCTCTGTTGTCCCTGCAGGCATACAGGAGTACAGAGCCGACATGA
GCAATGAAGATCTGCTGGATGACCCGGGGAGGGATGCAATCGAGCAGGTA
GAGGGAGGGAGAAAAGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGAAGGAAGGGATTGAAAGCCTGGAGCCTACTGTGTCTTCCC
CTTACCTCTGTTTTGCTCCCCTCATCTCTACACCTACGCACCCCTCCTAT
TCCATCCCCCCACGCGTGTACAGACACTGACGGGCTTCTACACCGCCAGA
ATAGGGCTCCGCTTCCTCGTCGAGCATCATATCGTCAGCAACAATGCCCG
GTACACCCCTCCCTCCCCCCCGCCCTCCATCCCTCCCTCCCTCCCTTCAT
CCTTTTCATCTCATCCACTCTCCCTCTCCCTCTCCCTCTCCCTCCTTTTT
CTATTTCTCTAGCGAGGGCTACTCCGGGATCATCGCCTCCAACTGCTCCC
CCCACCAAATCTCCCAAGCCGCCGCCGCCGACGCCACGCGGTGCGTCCTC
TCCCTTCGCCCCTCCCTCCCTCCCTCCCTCTTTTCCTTCCTCCCTCTTTC
TCCCCAAATCACTTCGATTTCTCGCACTCACCCTCCCTCCCATTCGCCTT
CCCTCCCTCCCTCAGGCTCTGTCGAGCCGCCTTAGGGAACGCTCCTCCCA
TACGCATCATCGGCAAGGAAGACGACACCTTCTGCTACATTCCCTCCCAC
CTCTACTATATGGTCACCGAGGCCCTCAAGGTATCTCCTCCATCCCTCCC
TCTCTCCTTTCCGTGTATCGCCCCTTTAGTCTCATTTCCCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCACTTTCTTCCTTCCTT
CCTCCCCCTCTTCGAAGAACTCCTGTCGCGCAGTGGTCGAGAAGCACGAT
CCAATTTATCAAGCAGCAGCTAGAGAGGTCGCCCCCTCCCGCCACCTGGA
CCAAATGTTGAGAGCAGAGGCTCTCAGACAGGTAGGCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTTTGTATCCCCGCATCTATCACTCACGTCTC
CCTCCCTCCCTCCCTCCCTCCCTTCATTTGCCCCCAACAAAATTGTGATA
GCATTTACACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCAGGCTCAAGCTCGTGTCAACCCGGCAGAACTGCCCCCAAT
CAAAGTAGTGGTGGCCATGGGCGAGGAGGACGTCACGATCAAGGTAGGGC
GGAAGGGAAAACGTGAGGGAGGGAGAAATGAAAAGAATAAAAACTCAAGC
ACCACGGACCTCCCTTGTTTTTTGGGTTGACTTAGGACCACATGCATCCT
TATTCTCTCCCTCCCTCTCCTTCCCTTCCTCCCTCTCCTTCCTCTCTCGC
TCCCTCTCTTCCTCAGGTGGCGGACGAAGGCGGCGGAGTCCCTCGGTCTG
ACTTAGGCCTGCTCTGGACCTTCTTCTACACCACGTTCCCTCCCTCTATC
CCTTCCTCCCCCGCGCCCTTGGCAGCAGGAGGGGCCGGAGGGGGCTCATT
GGACGAGAATGTGACCGTGACGGTGAGGAAGGAAGGAAGAGAGGGAGGGA
TGGAGGAAGGGAGGGAAGAAGGATTGAAGGAAAAATACGATGTCTCATCT
TTTCTCTTTCTTTTAATACATTCCACCGGGACTGGGATATTCAGAACGCA
GCAGGCAGCGCGGCTTCCTCTCCTTTCACTTTCCCCAACGTCGGCACCGA
GCCTGTACTAGCGGGGCATGGTAATCCAGGAAGGGAGGGGGAGATGGAGG
GATGGAGGGGAGGGAGGGATGATGGGAATGGATGAGTCTAAGGCATGATC
ATTGATAGCATCCCGTGCGTGGGGAAAGAGGGATGGGGACAGAGAGTGAG
GGAGGGAAGAAAAATGCATCCACCGACCTCTATTCATCAATTTATGTATC
GATCTATCCTCTATTTCTACTTCTACTGTTACTACAACTACTTCTACCTT
TACTGATGCTGCTGCCGATACCACAGGGATGGGCCTTCCCCTTTCTCGGA
TCTACGCCCGCTACTTCGGCGGAGACCTGGAGGTAGGTCATAGGAAATCC
GTTAGGAAGACACTCTTACCGTCTTCCTTCTCAAGGCTTTTTCTCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTTCTTCATAGGTTAAGTCTCTAGA
GGGTTTCGGGATGGACTCCTATCTCCATCTCTGCAAACTGGGGGACCGCT
GCGAAGACCTGGGGTTGCAGGTATGAAGGGAGGGAAGGAGGAAAGGAGTG
GTGAACTGCCTTGTATGTCTATGCATGTGATTCAGAGACATGAGAGGTGT
GCTATAGGTGAGGAGCGTGCGTGTATGCTGACTTCTTTTTCTTACTGCCT
TTCTCTCCCTGCCATACTCCACAGGTTATGCGCAGCCCAGCGGGTCGCGA
TAGTACCCCGACGGAGGCCGCACGAAAAATTTCTTAGCGTAGCGGACATG
AAAAGGAGGGGAGAAGAGAGGAGGTGTGTGAGTGGGAAGGCGGAAAGATA
CGAGTACTGAGTGAAGGGATAGGGGCACACACAATATCGTCTAGGCTTCT
TTCTTCCGCCTGCATGTCAGCCTGCTTCGACTGAACGTAAGATGCCCATG
CACAATTATGAAGGAAAATTGCGAATGAAATAATGAGCGAGATTTTCTGT
ATCTTTGTCGTT
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Coding sequence (CDS) from alignment at chr26:55726..59737+

>NO26G00170.6 ID=NO26G00170.6|Name=NO26G00170.6|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr26:55726..59737+ (Nannochloropsis oceanica)
ATGGGCTGGTACGCGGGCTACGTAGAGGAGCTTTTGGCGTTCCCCAAGCC
CATGGACGCAGAGCAGGAATACGATTTCACCTGTCTCCTGGCCTCCATCC
TCTGTGACCACACGTCGGTGCCACGGGCCTTAGCACACGGCATACAGGAG
TACAGAGCCGACATGAGCAATGAAGATCTGCTGGATGACCCGGGGAGGGA
TGCAATCGAGCAGACACTGACGGGCTTCTACACCGCCAGAATAGGGCTCC
GCTTCCTCGTCGAGCATCATATCGTCAGCAACAATGCCCGCGAGGGCTAC
TCCGGGATCATCGCCTCCAACTGCTCCCCCCACCAAATCTCCCAAGCCGC
CGCCGCCGACGCCACGCGGCTCTGTCGAGCCGCCTTAGGGAACGCTCCTC
CCATACGCATCATCGGCAAGGAAGACGACACCTTCTGCTACATTCCCTCC
CACCTCTACTATATGGTCACCGAGGCCCTCAAGAACTCCTGTCGCGCAGT
GGTCGAGAAGCACGATCCAATTTATCAAGCAGCAGCTAGAGAGGTCGCCC
CCTCCCGCCACCTGGACCAAATGTTGAGAGCAGAGGCTCTCAGACAGGCT
CAAGCTCGTGTCAACCCGGCAGAACTGCCCCCAATCAAAGTAGTGGTGGC
CATGGGCGAGGAGGACGTCACGATCAAGGTGGCGGACGAAGGCGGCGGAG
TCCCTCGGTCTGACTTAGGCCTGCTCTGGACCTTCTTCTACACCACGTTC
CCTCCCTCTATCCCTTCCTCCCCCGCGCCCTTGGCAGCAGGAGGGGCCGG
AGGGGGCTCATTGGACGAGAATGTGACCGTGACGAACGCAGCAGGCAGCG
CGGCTTCCTCTCCTTTCACTTTCCCCAACGTCGGCACCGAGCCTGTACTA
GCGGGGCATGGGATGGGCCTTCCCCTTTCTCGGATCTACGCCCGCTACTT
CGGCGGAGACCTGGAGGTTAAGTCTCTAGAGGGTTTCGGGATGGACTCCT
ATCTCCATCTCTGCAAACTGGGGGACCGCTGCGAAGACCTGGGGTTGCAG
GTTATGCGCAGCCCAGCGGGTCGCGATAGTACCCCGACGGAGGCCGCACG
AAAAATTTCTTAG
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Synonyms
Publications