NO26G00140.1, NO26G00140.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO26G00140.1
Unique Name	NO26G00140.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1380
Alignment location	chr26:46416..48560 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr26	genome	chr26:46416..48560 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO26G00140.1 vs.
Match: CBN79281.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 205.3 bits (521), Expect = 4.100e-49
Identity = 154/420 (36.67%), Postives = 206/420 (49.05%), Query Frame = 0

Query:   55 YRALDEDVRDFWVPRE--VKRLRHPITALTFLRDYVQPSIPVIFSKGSGLLDQWQGVERWKEWEWVVGRVGEETIVSVNVTPDGRGDAILEMRKEIERKVEEEKRVERKTQNFKRTEGRKEGRPGSPSS-----PPSLPPRPPPHPRRVFIKPEERRMAFGAFVDILL-----HGEDE-----GGRESGREEGVFYLSQQNDNMRVDFPMFLSDGQGTREEGGEEGQVPAAGFPIARQVFGHAPDAINLWIGGRRSVSSVHKDPYENMYAVLKGEKHFTLFPPSDAASFSVAQDLLQATYHSSPSSRTLSVSIEDQGR------REDGGRIDWIDLEASREGGREGG--RALHPLEVWVKEGEVLYLPALWFHEVTQTCPTIAVNYWHDMAFLGPKYVYFNFMQRLG---RQRQRRREGG 447
            +  L +D R FW      V+RL        F RDYV  S PVI S G G      G   W +   + GR  E   V+V+ TPDGRGD ++++   +   + E    +    +   T GR  G  GS  S       ++          VF+KPEERRM F AFV  LL        DE     G    G  +GV YLS QND++R +FP  + D +                  +AR+ FG+ PDA+NLWIG  RS+S+VHKD YENMY V++GEKHFTL PPSD   F   Q+  Q  Y    S        E +GR        + G++ WI ++ +     +    R   P+   V  G++LYLP+LW+H V+Q   T+AVNYWHDM F   KYV++ F+Q L    R+   RR GG
Sbjct:    5 FEQLQDDTRSFWQHPSSGVRRLDTMPPPADFFRDYVATSTPVILS-GGGCFKGGGGRSCWDDLASLAGRDSEGLEVTVDFTPDGRGDCVVDVADSM---LSELPTSDANAMHDSATGGRVAGAEGSRRSCGTGDAVNVGSAAAARTTAVFVKPEERRMKFEAFVSTLLTEAAARASDESSSTRGCTSGGAGKGVPYLSHQNDSLRQEFPGLMEDVEPF--------------LALAREAFGNEPDAVNLWIGDDRSLSAVHKDHYENMYCVVRGEKHFTLLPPSDVL-FLYEQEYPQGRYRQRRSVD----GGEGEGRGGEFEVEMEEGKVPWIPVDPACPDLEKYPLFRFASPVHCRVGPGDILYLPSLWYHRVSQRGITVAVNYWHDMQF-DHKYVHYRFLQTLAGKLREGVVRRPGG 400

The following BLAST results are available for this feature:

BLAST of NO26G00140.1 vs.

BLAST of NO26G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN79281.1	4.100e-49	36.67	conserved unknown protein [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO26G00140	NO26G00140	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO26G00140.1	NO26G00140.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO26G00140.1.cds1	NO26G00140.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00140.1.cds2	NO26G00140.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00140.1.cds3	NO26G00140.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00140.1.cds4	NO26G00140.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO26G00140.1.cds5	NO26G00140.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr26:46416..48560-
coding sequence from alignment at chr26:46416..48560-

mRNA sequence

>NO26G00140.1 ID=NO26G00140.1|Name=NO26G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
ATGCCTGAGAGGGGGACGAAGCTTGACAACGCCTTCAACCAGCGATTCAG
CGGAGGAAACGACGATTTTGGAATGCACCACACGGACAATGGTGACCGAG
ACGATGACCACCGGTACAAAGATGTCAAGGGAGAAAATGTCGATGACGAT
GAGAATGCCCCATACCGAGCGCTCGACGAGGATGTTCGAGATTTTTGGGT
CCCACGGGAGGTGAAGCGATTGAGACATCCCATCACGGCATTGACTTTCC
TAAGAGACTACGTCCAGCCTTCCATTCCCGTCATTTTCTCAAAAGGGAGT
GGGCTCCTCGACCAATGGCAGGGCGTGGAGAGGTGGAAGGAGTGGGAATG
GGTGGTGGGAAGGGTAGGAGAGGAGACAATAGTCTCTGTCAACGTGACCC
CTGATGGGAGAGGTGACGCCATTCTGGAGATGCGGAAGGAAATCGAGAGA
AAGGTCGAAGAGGAGAAAAGGGTAGAGAGGAAAACTCAAAATTTCAAAAG
GACGGAGGGAAGGAAGGAGGGGCGGCCTGGTTCTCCGTCCTCTCCTCCTT
CCCTTCCTCCTCGTCCTCCCCCGCACCCTCGACGTGTCTTCATCAAGCCC
GAAGAACGGCGAATGGCCTTCGGCGCTTTCGTCGACATCCTCCTCCACGG
GGAAGATGAGGGCGGGAGAGAAAGCGGGAGGGAGGAAGGGGTGTTCTACC
TCAGCCAACAGAACGACAACATGCGCGTCGACTTTCCTATGTTCCTCTCG
GACGGCCAAGGCACGCGGGAGGAAGGGGGCGAGGAAGGGCAGGTTCCCGC
TGCCGGCTTCCCAATCGCCCGCCAGGTGTTTGGTCATGCCCCGGACGCGA
TTAATTTGTGGATCGGTGGCCGCAGGAGCGTCTCGTCGGTCCACAAGGAT
CCTTACGAAAACATGTATGCCGTGCTCAAGGGGGAGAAGCATTTCACCCT
CTTCCCTCCCTCTGACGCCGCCTCCTTTTCTGTTGCCCAGGATCTTCTTC
AAGCCACTTATCACTCCTCTCCTTCCTCCCGCACTCTCTCCGTTTCGATC
GAGGACCAGGGCAGGAGGGAGGATGGGGGTCGGATCGACTGGATCGACTT
GGAGGCGTCGAGGGAGGGAGGGAGGGAAGGAGGGAGGGCGTTGCACCCCC
TGGAGGTGTGGGTGAAGGAGGGGGAGGTGCTGTATTTACCTGCATTGTGG
TTCCACGAGGTGACACAGACGTGTCCAACAATAGCCGTCAACTACTGGCA
CGACATGGCGTTCCTAGGACCAAAGTATGTGTATTTTAACTTCATGCAGC
GCCTCGGTAGGCAGCGACAAAGAAGGAGGGAGGGAGGGAGGGAAGGAGGG
AAGGAGGGAGGGAAGGAGGGAGGGGAATAG

protein sequence of NO26G00140.1

>NO26G00140.1-protein ID=NO26G00140.1-protein|Name=NO26G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MPERGTKLDNAFNQRFSGGNDDFGMHHTDNGDRDDDHRYKDVKGENVDDD
ENAPYRALDEDVRDFWVPREVKRLRHPITALTFLRDYVQPSIPVIFSKGS
GLLDQWQGVERWKEWEWVVGRVGEETIVSVNVTPDGRGDAILEMRKEIER
KVEEEKRVERKTQNFKRTEGRKEGRPGSPSSPPSLPPRPPPHPRRVFIKP
EERRMAFGAFVDILLHGEDEGGRESGREEGVFYLSQQNDNMRVDFPMFLS
DGQGTREEGGEEGQVPAAGFPIARQVFGHAPDAINLWIGGRRSVSSVHKD
PYENMYAVLKGEKHFTLFPPSDAASFSVAQDLLQATYHSSPSSRTLSVSI
EDQGRREDGGRIDWIDLEASREGGREGGRALHPLEVWVKEGEVLYLPALW
FHEVTQTCPTIAVNYWHDMAFLGPKYVYFNFMQRLGRQRQRRREGGREGG
KEGGKEGGE*

mRNA from alignment at chr26:46416..48560-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO26G00140.1 ID=NO26G00140.1|Name=NO26G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2145bp|location=Sequence derived from alignment at chr26:46416..48560- (Nannochloropsis oceanica)
ATGCCTGAGAGGGGGACGAAGCTTGACAACGCCTTCAACCAGCGATTCAG
CGGAGGAAACGACGATTTTGGGTGAGGCCCCGCAGACAGGGAAATGTAAA
GAGCACCCATTACTGTCTACACCTAACGGAACGGAATCTCGTTGACAAGA
GACGTACAAGGAGAAATAGGAGGAGAAGGAGGAGGAGGAGGCCGAAATAA
TCTCCCTGCCCTCTCTCCACACCGCCCACAGAATGCACCACACGGACAAT
GGTGACCGAGACGATGACCACCGGTACAAAGATGTCAAGGGAGAAAATGT
CGATGACGATGAGAATGCCCCATACCGAGCGCTCGACGAGGATGTTCGAG
ATTTTTGGGTCCCACGGGAGGTGAAGCGATTGAGACATCCCATCACGGCA
TTGACTTTCCTAAGAGTAAGTATCATCCGGCAGGAGGTTATAAAATCAGA
GTAACAAGTCAATAATTATAAAATCTCATTCCCTCACACCCAAATGCGTT
CCTCCATGTGCCAAGGTGACTCACGACACACCACCCTTCCTCCCTCCTTC
TATCCTCTCTTTCCTCCAGGACTACGTCCAGCCTTCCATTCCCGTCATTT
TCTCAAAAGGGAGTGGGCTCCTCGACCAATGGCAGGGCGTGGAGAGGTGG
AAGGAGTGGGAATGGGTGGTGGGAAGGGTAGGAGAGGAGACAATAGTCTC
TGTCAACGTGACCCCTGATGGGAGAGGTGACGCCATTCTGGAGATGCGGA
AGGAAATCGAGAGAAAGGTCGAAGAGGAGAAAAGGGTAGAGAGGAAAACT
CAAAATTTCAAAAGGACGGAGGGAAGGAAGGAGGGGCGGCCTGGTTCTCC
GTCCTCTCCTCCTTCCCTTCCTCCTCGTCCTCCCCCGCACCCTCGACGTG
TCTTCATCAAGCCCGAAGAACGGCGAATGGCCTTCGGCGCTTTCGTCGAC
ATCCTCCTCCACGGGGAAGATGAGGGCGGGAGAGAAAGCGGGAGGGAGGA
AGGGGTGTTCTACCTCAGCCAACAGAACGACAACATGCGCGTCGACTTTC
CTATGTTCCTCTCGGACGGCCAAGGCACGCGGGAGGAAGGGGGCGAGGAA
GGGCAGGTTCCCGCTGCCGGCTTCCCAATCGCCCGCCAGGTGTTTGGTCA
TGCCCCGGACGCGATTAATTTGTGGATCGGTGGCCGCAGGAGCGTCTCGT
CGGTCCACAAGGATCCTTACGAAAACATGTATGCCGTGCTCAAGGGGGAG
AAGGTAGGCGGTAGGGGGCTTCCCTCCCTCCCTGCCCTCCCTCCCTCCCT
CCCTCCCTTTCGTCTACGATTTCCTCGTTGTTTTCTCATTCCCATTAGCA
TGTCACTCCCTTTCCCCCCTCCGACATGTCCTCTCTCTGCCACCTCTCCC
GGGTGCTTCCACAAGCTTCTGACCCCAGCTCACCCCTCCCTACTTCCCTC
CCTCCCTCCCACCCTCCTTCAGCATTTCACCCTCTTCCCTCCCTCTGACG
CCGCCTCCTTTTCTGTTGCCCAGGATCTTCTTCAAGCCACTTATCACTCC
TCTCCTTCCTCCCGCACTCTCTCCGTTTCGATCGAGGACCAGGGCAGGAG
GGAGGATGGGGGTCGGATCGACTGGATCGACTTGGAGGCGTCGAGGGAGG
GAGGGAGGGAAGGAGGGAGGGCGTTGCACCCCCTGGAGGTGTGGGTGAAG
GAGGGGGAGGTGCTGTATTTACCTGCATTGTGGTTCCACGAGGTGACACA
GACGTGTCCAACAATAGCCGGTACGGAGGGAGGGAGGGAGGGGGAGAGGG
AAGGGGGGGGACCTCAATAGAAGCAAATAGAGCATCTTCTAGCCTCCCTC
TACCATCTCTTTTTCTTTCCCTCCCTCCCCCTTCCCTCTCCCCTCACCCC
CTCCTTCCAGTCAACTACTGACACGACATGGCGTTCCTAGGACATGAGCG
TGTGTATTTTAATCATCCCTATCTCTTCCCTTCCCTCACCCCCTCCTTCC
AGTCAACTACTGGCACGACATGGCGTTCCTAGGACCAAAGTATGTGTATT
TTAACTTCATGCAGCGCCTCGGTAGGCAGCGACAAAGAAGGAGGGAGGGA
GGGAGGGAAGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGGAATAG

Coding sequence (CDS) from alignment at chr26:46416..48560-

>NO26G00140.1 ID=NO26G00140.1|Name=NO26G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at chr26:46416..48560- (Nannochloropsis oceanica)
ATGCCTGAGAGGGGGACGAAGCTTGACAACGCCTTCAACCAGCGATTCAG
CGGAGGAAACGACGATTTTGGAATGCACCACACGGACAATGGTGACCGAG
ACGATGACCACCGGTACAAAGATGTCAAGGGAGAAAATGTCGATGACGAT
GAGAATGCCCCATACCGAGCGCTCGACGAGGATGTTCGAGATTTTTGGGT
CCCACGGGAGGTGAAGCGATTGAGACATCCCATCACGGCATTGACTTTCC
TAAGAGACTACGTCCAGCCTTCCATTCCCGTCATTTTCTCAAAAGGGAGT
GGGCTCCTCGACCAATGGCAGGGCGTGGAGAGGTGGAAGGAGTGGGAATG
GGTGGTGGGAAGGGTAGGAGAGGAGACAATAGTCTCTGTCAACGTGACCC
CTGATGGGAGAGGTGACGCCATTCTGGAGATGCGGAAGGAAATCGAGAGA
AAGGTCGAAGAGGAGAAAAGGGTAGAGAGGAAAACTCAAAATTTCAAAAG
GACGGAGGGAAGGAAGGAGGGGCGGCCTGGTTCTCCGTCCTCTCCTCCTT
CCCTTCCTCCTCGTCCTCCCCCGCACCCTCGACGTGTCTTCATCAAGCCC
GAAGAACGGCGAATGGCCTTCGGCGCTTTCGTCGACATCCTCCTCCACGG
GGAAGATGAGGGCGGGAGAGAAAGCGGGAGGGAGGAAGGGGTGTTCTACC
TCAGCCAACAGAACGACAACATGCGCGTCGACTTTCCTATGTTCCTCTCG
GACGGCCAAGGCACGCGGGAGGAAGGGGGCGAGGAAGGGCAGGTTCCCGC
TGCCGGCTTCCCAATCGCCCGCCAGGTGTTTGGTCATGCCCCGGACGCGA
TTAATTTGTGGATCGGTGGCCGCAGGAGCGTCTCGTCGGTCCACAAGGAT
CCTTACGAAAACATGTATGCCGTGCTCAAGGGGGAGAAGCATTTCACCCT
CTTCCCTCCCTCTGACGCCGCCTCCTTTTCTGTTGCCCAGGATCTTCTTC
AAGCCACTTATCACTCCTCTCCTTCCTCCCGCACTCTCTCCGTTTCGATC
GAGGACCAGGGCAGGAGGGAGGATGGGGGTCGGATCGACTGGATCGACTT
GGAGGCGTCGAGGGAGGGAGGGAGGGAAGGAGGGAGGGCGTTGCACCCCC
TGGAGGTGTGGGTGAAGGAGGGGGAGGTGCTGTATTTACCTGCATTGTGG
TTCCACGAGGTGACACAGACGTGTCCAACAATAGCCGTCAACTACTGGCA
CGACATGGCGTTCCTAGGACCAAAGTATGTGTATTTTAACTTCATGCAGC
GCCTCGGTAGGCAGCGACAAAGAAGGAGGGAGGGAGGGAGGGAAGGAGGG
AAGGAGGGAGGGAAGGAGGGAGGGGAATAG

Synonyms

Publications