|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr26 | genome | chr26:27708..31439 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO26G00100.2 vs.
Match: XP_005855931.1 (hydrolase involved in interstrand cross-link repair [Nannochloropsis gaditana CCMP526]; EKU20432.1 hydrolase involved in interstrand cross-link repair [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 195.7 bits (496), Expect = 3.400e-46 Identity = 130/231 (56.28%), Postives = 155/231 (67.10%), Query Frame = 0
Query: 267 EEAVKQLENEGEEEEEEEEEVGARRPVVGFRPTGWSFTRNKKKKGKDDFPSSFTSLPAPPSSYTPWINEEEGAKLYFVPYSEHSSYTELRAFIRAIRPRKIIPTVSAGDEKAVERQLKHFLPDMDLSQDRARLDSYFMGGERGGGREGGRVGGREGEGGARGRGRGMDLGEVDVKEQVQRWAEL---VGRDGKEEGGGR---EVEMKRTKEEKRMKRKAVVEVVLIDDDDD 492
EE +E E EEEEEE+E A RPVVGFRPTGWS+ RN+K +D PSS PSSYTPW+N + GAKLY+VPYSEHSSYTELR+F+RAIRPRKIIPTV AGDEK VERQLKHFL DMDLS DR+RLD Y GE + R EGG G+ + D ++DV+EQV RW EL + DGK + GR E E +EK + RK VEV+++DDDD+
Sbjct: 4 EEGAGVMEEE-EEEEEEKEGDDACRPVVGFRPTGWSYLRNRKT-ARDACPSS-------PSSYTPWVNPQNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRYLGRGEE-KRLKILPPNKRRLEGGVGGKRKTFDFEKIDVEEQVLRWEELSKGLNSDGKVQERGRGWDEREFTSDTKEKGLGRK-TVEVIVLDDDDN 223
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO26G00100.2 ID=NO26G00100.2|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=mRNA|length=2666bp GCGGTTTCCTTCGTGTGTCTGTTGCATGTGAGGGACGAGGGGGAGGAAGC GAGGCGTTCGTTACTTAGGGCGAGATACATGAATGGTGAGGGGCACCTCA TAGTCGCGAGTGTGCAGACAAGGAAATCGCGCAGGCTCCCTCGGGCACAT TTAAGCCAAAGGCCTGGGAGGAGGCCGCGGAGGAGGAAGAGGAGAAGGAG GAGGCCCAGCACGAAAAGAAGCATGCGCCTATCTCTTCCGTGAGAACAAA AGCCTCGCCATCTCGTCTTCCAGCCCTCCCTTGTCTCGAGGAGCCAAAAC TGTAAATGTGGCTGTACATCCAGGCCGCTTTGTTGCTGTTGGAGGGAGAG TGAGGAGTGGTTCGGATGTGGACAGGCCAGGCGAAGGGAATCACAAGGTG TATCTACCGAACTGGACAGAAGAAGCTAGCGATGGAGGACCCGGGAATGA GTAATGAGGCGAACGCAGACACAGAGTGCTGCAGCGGGGCAGTGGGTTTG AGCGATGCCTTGCCTTGACCAGCTCCAGGGTCAAAGTGTATGAGGCGAAG TTGTATTTACACAATTCTTTCATATCTCGAAACCTAGATACAGGGCTACG TGGAGCATTTGTATTTGTATTGTTATTATTACCGGGCAAGCCGCCGGGGC GAACGAGGATATCGTGCGGAGGGACAGGGGCGGTGTAGGAGAAGGCGTGT ACCTGTGGGCTGGCTAGCTGTACAAGGGCATGGCGTCGCAGGTGGAGCGA ATCAAGTGGGTCGAAGGCACCTCCTTCCTCGTGGACGGCTTTGGGTTTAC CTCGCCCAAATGCTCTGCCTATTTCTTGACGCACTACCACAGTGATCACT ACTGGGGCCTGAGACCGTCTTTCAGCAAAGGCACTATCTTCTGCAGCGAG ATCACGGGCGCCCTTCTTATCGGCAAGCTAGGAATCAAGCCCCAATTTGT ACACATGCTGCCCATGGAGAGACCCACCACCATAGAGGTACGACCTCCCT CTCTTCCAACCTCACCTGGTGGGTTGAAGCCTTCCTCCCTCCCTCCCTTC TCCCGCCTTCCACTTTCTAGGGCGTGGAAGTCACTCTGCTAGATGCAAAC CATTGCCCTGGCGCCGTCATGCTGGTCTTTCACCTCAAGCGTGCGAACAA GACGATCCTCCACACGGGCGATTTCCGTGCTAGCGATGGATTGAGGGCGA GGATGACGGCCTGGCTGCGGGCGAGGGGGAGGAAGATCGACACTGTTTAC CTGGACACCACCTACTGCAATCACAAGTACACCTTTCCTTCCCAGGCCTC CGTCCTCGCCTCGCTATCTCTCCTGGCCCGGCGGGAGAAGGAGGCCGCTC CCTCCACCCTCTTCTACGTGGGCACCTACAGCATCGGCAAGGAGCGGGCC GTCCGCGCCGTGGCAGAAGGGATAGGCAGCAAGGTATACGCGGACAAGCA CAAGGAGCGGACCTTACGCCTCGCAGGGGAGTGGGACGACGGCCTCTATT CCTCCGATGCTAGGGAATGCTCCGTCAGGATGGCCTGGCTGGGGAGGCTG AGGGCCGAGAAAATGAGGGCGGGGGGGAGGAAGGGGGGCGGAAGGCTGAA AGGGCAGGAGGAGCTGCAACAGGAGCAACGGAAGCAACAGGATCGAGGGA GGACGGAGGAAAAGGAGGAGGAAGGGGGGAGAAAGGTGTTGGGGCGGGAA CAGGATGGAGAGAGAACGGATAAGGAGGGGGAGGAGGAAGAAGGGAAAGA AGGGAGAGAGGGAGGGGCAAAAACGAGTACACTGCAGCAGTCGCTTGGAA TGGAGGGGGAAAATGAGAGGGTTGAGGGGTATGCGTGGGAGGAGGAGGAG GAAGAAGAGGAGGAGGGGGAGGAGGGGAAGGAGGGGGGGGAGGGGGGACA AGACGACGACGACGGGGAGGAGGCAGTCAAGCAACTTGAAAATGAGGGGG AAGAGGAGGAGGAGGAGGAGGAGGAGGTAGGCGCCCGAAGGCCAGTCGTT GGCTTTCGTCCCACGGGCTGGAGCTTCACCCGGAACAAGAAGAAGAAGGG CAAGGACGACTTCCCCTCCTCCTTTACCTCCCTCCCTGCGCCCCCCTCCT CCTACACCCCCTGGATCAACGAGGAGGAAGGCGCCAAGCTGTACTTTGTC CCCTACTCCGAGCACTCTTCTTACACTGAATTGAGGGCATTTATCAGAGC GATACGGCCCAGGAAAATCATACCCACCGTAAGTGCAGGCGACGAGAAAG CCGTGGAGCGGCAACTGAAACATTTCCTCCCTGACATGGACCTATCCCAA GATCGGGCTCGTCTCGATAGTTACTTCATGGGGGGAGAAAGAGGGGGAGG AAGAGAGGGAGGGAGGGTGGGTGGGAGAGAGGGAGAGGGAGGAGCAAGAG GGAGAGGACGAGGGATGGATTTGGGTGAAGTGGATGTGAAAGAGCAGGTG CAGCGATGGGCGGAGCTAGTGGGGCGCGATGGCAAAGAGGAGGGAGGAGG AAGAGAAGTGGAAATGAAGCGGACAAAGGAGGAGAAGAGAATGAAGAGAA AAGCGGTTGTGGAGGTGGTGCTAATCGATGATGACGATGATTGAGGAGTT AGATAAGAGGACGGATGTGGATATGTACAGAAAATAGAAAATGAATAACC TTCCCTGCTGGGCCCA back to topprotein sequence of NO26G00100.2 >NO26G00100.2-protein ID=NO26G00100.2-protein|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp MLVFHLKRANKTILHTGDFRASDGLRARMTAWLRARGRKIDTVYLDTTYC NHKYTFPSQASVLASLSLLARREKEAAPSTLFYVGTYSIGKERAVRAVAE GIGSKVYADKHKERTLRLAGEWDDGLYSSDARECSVRMAWLGRLRAEKMR AGGRKGGGRLKGQEELQQEQRKQQDRGRTEEKEEEGGRKVLGREQDGERT DKEGEEEEGKEGREGGAKTSTLQQSLGMEGENERVEGYAWEEEEEEEEEG EEGKEGGEGGQDDDDGEEAVKQLENEGEEEEEEEEEVGARRPVVGFRPTG WSFTRNKKKKGKDDFPSSFTSLPAPPSSYTPWINEEEGAKLYFVPYSEHS SYTELRAFIRAIRPRKIIPTVSAGDEKAVERQLKHFLPDMDLSQDRARLD SYFMGGERGGGREGGRVGGREGEGGARGRGRGMDLGEVDVKEQVQRWAEL VGRDGKEEGGGREVEMKRTKEEKRMKRKAVVEVVLIDDDDD* back to topmRNA from alignment at chr26:27708..31439- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO26G00100.2 ID=NO26G00100.2|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=mRNA|length=3732bp|location=Sequence derived from alignment at chr26:27708..31439- (Nannochloropsis oceanica) GCGGTTTCCTTCGTGTGTCTGTTGCATGTGAGGGACGAGGGGGAGGAAGC
GAGGCGTTCGTTACTTAGGGCGAGATACATGAATGGTGAGGGGCACCTCA
TAGTCGCGAGTGTGCAGACAAGGAAATCGCGCAGGCTCCCTCGGGCACAT
TTAAGCCAAAGGCCTGGGAGGAGGCCGCGGAGGAGGAAGAGGAGAAGGAG
GAGGCCCAGCACGAAAAGAAGCATGCGCCTATCTCTTCCGTGAGAACAAA
AGCCTCGCCATCTCGTCTTCCAGCCCTCCCTTGTCTCGAGGAGCCAAAAC
TGTAAATGTGGCTGTACATCCAGGCCGCTTTGTTGCTGTTGGAGGGAGAG
TGAGGAGTGGTTCGGATGTGGACAGGCCAGGCGAAGGGAATCACAAGGTG
TATCTACCGAACTGGACAGAAGAAGCTAGCGATGGAGGACCCGGGAATGA
GTAATGAGGCGAACGCAGACACAGAGTGCTGCAGCGGGGCAGTGGGTTTG
AGCGATGCCTTGCCTTGACCAGCTCCAGGGTCAAAGTGTATGAGGCGAAG
TTGTATTTACACAATTCTTTCATATCTCGAAACCTAGATACAGGGCTACG
TGGAGCATTTGTATTTGTATTGTTATTATTACCGGGCAAGCCGCCGGGGC
GAACGAGGATATCGTGCGGAGGGACAGGGGCGGTGTAGGAGAAGGCGTGT
ACCTGTGGGCTGGCTAGCTGTACAAGGGCATGGCGTCGCAGGTGGAGCGA
ATCAAGTGGGTCGAAGTACGTTGTTCCCGTGGTGATGGGTGGATAGGGTG
GAGGGTTGATGAGAGGCGTGCCCAACTTTCCGTCTCTTCCTTGCCCTGTG
GCGTCACCTACCTCCTGCTTCCGATTATAGTGGAAAATGTGCCTGTCATA
CCTCAATCCTTCCCGCCCTCTCTTCATTCCCTGACTGCTATTAGGGCACC
TCCTTCCTCGTGGACGGCTTTGGGTTTACCTCGCCCAAATGCTCTGCCTA
TTTCTTGACGCACTACCACAGTGATCACTACTGGGGCCTGAGACCGTCTT
TCAGCAAAGGTCAGGAGAGAAAGGGACGAAGAGGAGACTGAGACGGGTGG
ATGCGAGTGTTTCTACCTACGAGATCGAGTGATACATGCCTCCTTTCGCG
TCGCATTGCCTTCACACCCAGCCCTCCCTCCCTCACTCCCTCACCCTCCT
CCTTTCCTTCCTTCCTCAACCTTTCCTCCGCAGGCACTATCTTCTGCAGC
GAGATCACGGGCGCCCTTCTTATCGGCAAGCTAGGAATCAAGCCCCAATT
TGTACACATGCTGCCCATGGAGAGACCCACCACCATAGAGGTACGACCTC
CCTCTCTTCCAACCTCACCTGGTGGGTTGAAGCCTTCCTCCCTCCCTCCC
TTCTCCCGCCTTCCACTTTCTAGGGCGTGGAAGTCACTCTGCTAGATGCA
AACCATTGCCCTGGCGCCGTCATGCTGGTCTTTCACCTCAAGCGTGGTAG
GGAGGGAGGGAGGAAGGGAGGGAAGGAGGGGCAAAGGAAGTGTTTTCACA
CCCTCATGCACATCCACAGCCACACCCATCCCTCTTTTCCTCCCTTTCCC
CCCCCTTCTTTTTCTCTCCCCCCCCCTCCAGCGAACAAGACGATCCTCCA
CACGGGCGATTTCCGTGCTAGCGATGGATTGAGGGCGAGGATGACGGCCT
GGCTGCGGGCGAGGGGGAGGAAGATCGACACTGTTTACCTGGACACCACC
TACTGCAATCACAAGGCATGCCCTCCCTCTCTCTCCCTCCCTTTCTTTCA
CCTTCTTTTCCATTTCCACTGAATGACGGTATCAAGCCAACTCACCATCT
CTCCCTCCCTCTCTCCCTCCCTTCCTCCTTCCAGTACACCTTTCCTTCCC
AGGCCTCCGTCCTCGCCTCGCTATCTCTCCTGGCCCGGCGGGAGAAGGAG
GCCGCTCCCTCCACCCTCTTCTACGTGGGCACCTACAGCATCGGCAAGGA
GCGGGCCGTCCGCGCCGTGGCAGAAGGGATAGGTTGGGAAGGAGGGATGG
AGGGAGGGAGGGAGGGAGGGAATGTCCTTCATTGTGTCTTTCCCTCTTCA
CACTTCCACCTTATTCCCTCGCCATCTACCTCTCTCTCTCCCTCCCTCCC
CTCTTCCCTTTCTCCCTCCGCCCGTGGCTTTCTCTTGCCCAGGCAGCAAG
GTATACGCGGACAAGCACAAGGAGCGGACCTTACGCCTCGCAGGGGAGTG
GGACGACGGCCTCTATTCCTCCGATGCTAGGGAATGCTCCGTCAGGATGG
CCTGGCTGGGGAGGCTGAGGGCCGAGAAAATGAGGGCGGGGGGGAGGAAG
GGGGGCGGAAGGCTGAAAGGGCAGGAGGAGCTGCAACAGGAGCAACGGAA
GCAACAGGATCGAGGGAGGACGGAGGAAAAGGAGGAGGAAGGGGGGAGAA
AGGTGTTGGGGCGGGAACAGGATGGAGAGAGAACGGATAAGGAGGGGGAG
GAGGAAGAAGGGAAAGAAGGGAGAGAGGGAGGGGCAAAAACGAGTACACT
GCAGCAGTCGCTTGGAATGGAGGGGGAAAATGAGAGGGTTGAGGGGTATG
CGTGGGAGGAGGAGGAGGAAGAAGAGGAGGAGGGGGAGGAGGGGAAGGAG
GGGGGGGAGGGGGGACAAGACGACGACGACGGGGAGGAGGCAGTCAAGCA
ACTTGAAAATGAGGGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGTAGGCG
CCCGAAGGCCAGTCGTTGGCTTTCGTCCCACGGGTGAGAGTGAGGAGGAG
GAGCAGCCGCGGCAGCAAGTCTACCTCATGGTCTTTAGATTTCTAACCCA
CTTCCCTCCCTCTCTCCCTCCCTCTCTCCTCCCCTCTCTCCCTCTATCAG
GCTGGAGCTTCACCCGGAACAAGAAGAAGAAGGGCAAGGACGACTTCCCC
TCCTCCTTTACCTCCCTCCCTGCGCCCCCCTCCTCCTACACCCCCTGGAT
CAACGAGGAGGAAGGCGCCAAGCTGTACTTTGTCCCCTACTCCGAGCACT
CTTCTTACACTGAATTGAGGGCATTTATCAGAGCGATACGGCCCAGGTCA
GTTTTGGACCTCGTATTATTCCTTCTCTTCCTCCTTCTCTCCCTCCTTTC
GCCCCTCCTCTTCTCCCTCAAAAACACATCCACCTGCCGATGAAACTTTA
GAATAACGGTAGGTGAATAATCCACTTTTAAACCCTTTCTACCCCTTGCC
TCCTTCCTTTTCTCTCTTCCTTTCGCAGGAAAATCATACCCACCGTAAGT
GCAGGCGACGAGAAAGCCGTGGAGCGGCAACTGAAACATTTCCTCCCTGA
CATGGACCTATCCCAAGATCGGGCTCGTCTCGATAGTTACTTCATGGGGG
GAGAAAGAGGGGGAGGAAGAGAGGGAGGGAGGGTGGGTGGGAGAGAGGGA
GAGGGAGGAGCAAGAGGGAGAGGACGAGGGATGGATTTGGGTGAAGTGGA
TGTGAAAGAGCAGGTGCAGCGATGGGCGGAGCTAGTGGGGCGCGATGGCA
AAGAGGAGGGAGGAGGAAGAGAAGTGGAAATGAAGCGGACAAAGGAGGAG
AAGAGAATGAAGAGAAAAGCGGTTGTGGAGGTGGTGCTAATCGATGATGA
CGATGATTGAGGAGTTAGATAAGAGGACGGATGTGGATATGTACAGAAAA
TAGAAAATGAATAACCTTCCCTGCTGGGCCCA back to topCoding sequence (CDS) from alignment at chr26:27708..31439- >NO26G00100.2 ID=NO26G00100.2|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at chr26:27708..31439- (Nannochloropsis oceanica) ATGCTGGTCTTTCACCTCAAGCGTGCGAACAAGACGATCCTCCACACGGG CGATTTCCGTGCTAGCGATGGATTGAGGGCGAGGATGACGGCCTGGCTGC GGGCGAGGGGGAGGAAGATCGACACTGTTTACCTGGACACCACCTACTGC AATCACAAGTACACCTTTCCTTCCCAGGCCTCCGTCCTCGCCTCGCTATC TCTCCTGGCCCGGCGGGAGAAGGAGGCCGCTCCCTCCACCCTCTTCTACG TGGGCACCTACAGCATCGGCAAGGAGCGGGCCGTCCGCGCCGTGGCAGAA GGGATAGGCAGCAAGGTATACGCGGACAAGCACAAGGAGCGGACCTTACG CCTCGCAGGGGAGTGGGACGACGGCCTCTATTCCTCCGATGCTAGGGAAT GCTCCGTCAGGATGGCCTGGCTGGGGAGGCTGAGGGCCGAGAAAATGAGG GCGGGGGGGAGGAAGGGGGGCGGAAGGCTGAAAGGGCAGGAGGAGCTGCA ACAGGAGCAACGGAAGCAACAGGATCGAGGGAGGACGGAGGAAAAGGAGG AGGAAGGGGGGAGAAAGGTGTTGGGGCGGGAACAGGATGGAGAGAGAACG GATAAGGAGGGGGAGGAGGAAGAAGGGAAAGAAGGGAGAGAGGGAGGGGC AAAAACGAGTACACTGCAGCAGTCGCTTGGAATGGAGGGGGAAAATGAGA GGGTTGAGGGGTATGCGTGGGAGGAGGAGGAGGAAGAAGAGGAGGAGGGG GAGGAGGGGAAGGAGGGGGGGGAGGGGGGACAAGACGACGACGACGGGGA GGAGGCAGTCAAGCAACTTGAAAATGAGGGGGAAGAGGAGGAGGAGGAGG AGGAGGAGGTAGGCGCCCGAAGGCCAGTCGTTGGCTTTCGTCCCACGGGC TGGAGCTTCACCCGGAACAAGAAGAAGAAGGGCAAGGACGACTTCCCCTC CTCCTTTACCTCCCTCCCTGCGCCCCCCTCCTCCTACACCCCCTGGATCA ACGAGGAGGAAGGCGCCAAGCTGTACTTTGTCCCCTACTCCGAGCACTCT TCTTACACTGAATTGAGGGCATTTATCAGAGCGATACGGCCCAGGAAAAT CATACCCACCGTAAGTGCAGGCGACGAGAAAGCCGTGGAGCGGCAACTGA AACATTTCCTCCCTGACATGGACCTATCCCAAGATCGGGCTCGTCTCGAT AGTTACTTCATGGGGGGAGAAAGAGGGGGAGGAAGAGAGGGAGGGAGGGT GGGTGGGAGAGAGGGAGAGGGAGGAGCAAGAGGGAGAGGACGAGGGATGG ATTTGGGTGAAGTGGATGTGAAAGAGCAGGTGCAGCGATGGGCGGAGCTA GTGGGGCGCGATGGCAAAGAGGAGGGAGGAGGAAGAGAAGTGGAAATGAA GCGGACAAAGGAGGAGAAGAGAATGAAGAGAAAAGCGGTTGTGGAGGTGG TGCTAATCGATGATGACGATGATTGA back to top
|