Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr26 genome chr26:27708..31439 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO26G00100.2 vs.
Match: XP_005855931.1 (hydrolase involved in interstrand cross-link repair [Nannochloropsis gaditana CCMP526]; EKU20432.1 hydrolase involved in interstrand cross-link repair [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 195.7 bits (496), Expect = 3.400e-46
Identity = 130/231 (56.28%), Postives = 155/231 (67.10%), Query Frame = 0
Query: 267 EEAVKQLENEGEEEEEEEEEVGARRPVVGFRPTGWSFTRNKKKKGKDDFPSSFTSLPAPPSSYTPWINEEEGAKLYFVPYSEHSSYTELRAFIRAIRPRKIIPTVSAGDEKAVERQLKHFLPDMDLSQDRARLDSYFMGGERGGGREGGRVGGREGEGGARGRGRGMDLGEVDVKEQVQRWAEL---VGRDGKEEGGGR---EVEMKRTKEEKRMKRKAVVEVVLIDDDDD 492
EE +E E EEEEEE+E A RPVVGFRPTGWS+ RN+K +D PSS PSSYTPW+N + GAKLY+VPYSEHSSYTELR+F+RAIRPRKIIPTV AGDEK VERQLKHFL DMDLS DR+RLD Y GE + R EGG G+ + D ++DV+EQV RW EL + DGK + GR E E +EK + RK VEV+++DDDD+
Sbjct: 4 EEGAGVMEEE-EEEEEEKEGDDACRPVVGFRPTGWSYLRNRKT-ARDACPSS-------PSSYTPWVNPQNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRYLGRGEE-KRLKILPPNKRRLEGGVGGKRKTFDFEKIDVEEQVLRWEELSKGLNSDGKVQERGRGWDEREFTSDTKEKGLGRK-TVEVIVLDDDDN 223
The following BLAST results are available for this feature:
BLAST of NO26G00100.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 3.40e-46 / Id = 56.28 Sequence XP_005855931.1
Match Name E-value Identity Description
XP_005855931.1 3.400e-46 56.28 hydrolase involved in interstrand cross-link repai... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO26G00100.2 ID=NO26G00100.2|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=mRNA|length=2666bp back to top protein sequence of NO26G00100.2
>NO26G00100.2-protein ID=NO26G00100.2-protein|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp back to top mRNA from alignment at chr26:27708..31439-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00100.2 ID=NO26G00100.2|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=mRNA|length=3732bp|location=Sequence derived from alignment at chr26:27708..31439- (Nannochloropsis oceanica)ATGCTGGTCTTTCACCTCAAGCGTG GTAG
GGAGGGAGGGAGGAAGGGAGGGAAGGAGGGGCAAAGGAAGTGTTTTCACA
CCCTCATGCACATCCACAGCCACACCCATCCCTCTTTTCCTCCCTTTCCC
CCCCCTTCTTTTTCTCTCCCCCCCCCTCCAGCGAACAAGACGATCCTCCA
CACGGGCGATTTCCGTGCTAGCGATGGATTGAGGGCGAGGATGACGGCCT
GGCTGCGGGCGAGGGGGAGGAAGATCGACACTGTTTACCTGGACACCACC
TACTGCAATCACAAG GCATGCCCTCCCTCTCTCTCCCTCCCTTTCTTTCA
CCTTCTTTTCCATTTCCACTGAATGACGGTATCAAGCCAACTCACCATCT
CTCCCTCCCTCTCTCCCTCCCTTCCTCCTTCCAGTACACCTTTCCTTCCC
AGGCCTCCGTCCTCGCCTCGCTATCTCTCCTGGCCCGGCGGGAGAAGGAG
GCCGCTCCCTCCACCCTCTTCTACGTGGGCACCTACAGCATCGGCAAGGA
GCGGGCCGTCCGCGCCGTGGCAGAAGGGATAG GTTGGGAAGGAGGGATGG
AGGGAGGGAGGGAGGGAGGGAATGTCCTTCATTGTGTCTTTCCCTCTTCA
CACTTCCACCTTATTCCCTCGCCATCTACCTCTCTCTCTCCCTCCCTCCC
CTCTTCCCTTTCTCCCTCCGCCCGTGGCTTTCTCTTGCCCAGGCAGCAAG
GTATACGCGGACAAGCACAAGGAGCGGACCTTACGCCTCGCAGGGGAGTG
GGACGACGGCCTCTATTCCTCCGATGCTAGGGAATGCTCCGTCAGGATGG
CCTGGCTGGGGAGGCTGAGGGCCGAGAAAATGAGGGCGGGGGGGAGGAAG
GGGGGCGGAAGGCTGAAAGGGCAGGAGGAGCTGCAACAGGAGCAACGGAA
GCAACAGGATCGAGGGAGGACGGAGGAAAAGGAGGAGGAAGGGGGGAGAA
AGGTGTTGGGGCGGGAACAGGATGGAGAGAGAACGGATAAGGAGGGGGAG
GAGGAAGAAGGGAAAGAAGGGAGAGAGGGAGGGGCAAAAACGAGTACACT
GCAGCAGTCGCTTGGAATGGAGGGGGAAAATGAGAGGGTTGAGGGGTATG
CGTGGGAGGAGGAGGAGGAAGAAGAGGAGGAGGGGGAGGAGGGGAAGGAG
GGGGGGGAGGGGGGACAAGACGACGACGACGGGGAGGAGGCAGTCAAGCA
ACTTGAAAATGAGGGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGTAGGCG
CCCGAAGGCCAGTCGTTGGCTTTCGTCCCACGG GTGAGAGTGAGGAGGAG
GAGCAGCCGCGGCAGCAAGTCTACCTCATGGTCTTTAGATTTCTAACCCA
CTTCCCTCCCTCTCTCCCTCCCTCTCTCCTCCCCTCTCTCCCTCTATCAG
GCTGGAGCTTCACCCGGAACAAGAAGAAGAAGGGCAAGGACGACTTCCCC
TCCTCCTTTACCTCCCTCCCTGCGCCCCCCTCCTCCTACACCCCCTGGAT
CAACGAGGAGGAAGGCGCCAAGCTGTACTTTGTCCCCTACTCCGAGCACT
CTTCTTACACTGAATTGAGGGCATTTATCAGAGCGATACGGCCCAG GTCA
GTTTTGGACCTCGTATTATTCCTTCTCTTCCTCCTTCTCTCCCTCCTTTC
GCCCCTCCTCTTCTCCCTCAAAAACACATCCACCTGCCGATGAAACTTTA
GAATAACGGTAGGTGAATAATCCACTTTTAAACCCTTTCTACCCCTTGCC
TCCTTCCTTTTCTCTCTTCCTTTCGCAGGAAAATCATACCCACCGTAAGT
GCAGGCGACGAGAAAGCCGTGGAGCGGCAACTGAAACATTTCCTCCCTGA
CATGGACCTATCCCAAGATCGGGCTCGTCTCGATAGTTACTTCATGGGGG
GAGAAAGAGGGGGAGGAAGAGAGGGAGGGAGGGTGGGTGGGAGAGAGGGA
GAGGGAGGAGCAAGAGGGAGAGGACGAGGGATGGATTTGGGTGAAGTGGA
TGTGAAAGAGCAGGTGCAGCGATGGGCGGAGCTAGTGGGGCGCGATGGCA
AAGAGGAGGGAGGAGGAAGAGAAGTGGAAATGAAGCGGACAAAGGAGGAG
AAGAGAATGAAGAGAAAAGCGGTTGTGGAGGTGGTGCTAATCGATGATGA
CGATGATTGA back to top Coding sequence (CDS) from alignment at chr26:27708..31439-
>NO26G00100.2 ID=NO26G00100.2|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at chr26:27708..31439- (Nannochloropsis oceanica) back to top