NO26G00100.2, NO26G00100.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00100.2
Unique NameNO26G00100.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2666
Alignment locationchr26:27708..31439 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:27708..31439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO26G00100.2 vs.
Match: XP_005855931.1 (hydrolase involved in interstrand cross-link repair [Nannochloropsis gaditana CCMP526]; EKU20432.1 hydrolase involved in interstrand cross-link repair [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 195.7 bits (496), Expect = 3.400e-46
Identity = 130/231 (56.28%), Postives = 155/231 (67.10%), Query Frame = 0
Query:  267 EEAVKQLENEGEEEEEEEEEVGARRPVVGFRPTGWSFTRNKKKKGKDDFPSSFTSLPAPPSSYTPWINEEEGAKLYFVPYSEHSSYTELRAFIRAIRPRKIIPTVSAGDEKAVERQLKHFLPDMDLSQDRARLDSYFMGGERGGGREGGRVGGREGEGGARGRGRGMDLGEVDVKEQVQRWAEL---VGRDGKEEGGGR---EVEMKRTKEEKRMKRKAVVEVVLIDDDDD 492
            EE    +E E EEEEEE+E   A RPVVGFRPTGWS+ RN+K   +D  PSS       PSSYTPW+N + GAKLY+VPYSEHSSYTELR+F+RAIRPRKIIPTV AGDEK VERQLKHFL DMDLS DR+RLD Y   GE     +      R  EGG  G+ +  D  ++DV+EQV RW EL   +  DGK +  GR   E E     +EK + RK  VEV+++DDDD+
Sbjct:    4 EEGAGVMEEE-EEEEEEKEGDDACRPVVGFRPTGWSYLRNRKT-ARDACPSS-------PSSYTPWVNPQNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRYLGRGEE-KRLKILPPNKRRLEGGVGGKRKTFDFEKIDVEEQVLRWEELSKGLNSDGKVQERGRGWDEREFTSDTKEKGLGRK-TVEVIVLDDDDN 223          
The following BLAST results are available for this feature:
BLAST of NO26G00100.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855931.13.400e-4656.28hydrolase involved in interstrand cross-link repai... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00100NO26G00100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00100.2NO26G00100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00100.2.cds1NO26G00100.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00100.2.cds2NO26G00100.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00100.2.cds3NO26G00100.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00100.2.cds4NO26G00100.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00100.2.cds5NO26G00100.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00100.2.cds6NO26G00100.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00100.2 ID=NO26G00100.2|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=mRNA|length=2666bp
GCGGTTTCCTTCGTGTGTCTGTTGCATGTGAGGGACGAGGGGGAGGAAGC
GAGGCGTTCGTTACTTAGGGCGAGATACATGAATGGTGAGGGGCACCTCA
TAGTCGCGAGTGTGCAGACAAGGAAATCGCGCAGGCTCCCTCGGGCACAT
TTAAGCCAAAGGCCTGGGAGGAGGCCGCGGAGGAGGAAGAGGAGAAGGAG
GAGGCCCAGCACGAAAAGAAGCATGCGCCTATCTCTTCCGTGAGAACAAA
AGCCTCGCCATCTCGTCTTCCAGCCCTCCCTTGTCTCGAGGAGCCAAAAC
TGTAAATGTGGCTGTACATCCAGGCCGCTTTGTTGCTGTTGGAGGGAGAG
TGAGGAGTGGTTCGGATGTGGACAGGCCAGGCGAAGGGAATCACAAGGTG
TATCTACCGAACTGGACAGAAGAAGCTAGCGATGGAGGACCCGGGAATGA
GTAATGAGGCGAACGCAGACACAGAGTGCTGCAGCGGGGCAGTGGGTTTG
AGCGATGCCTTGCCTTGACCAGCTCCAGGGTCAAAGTGTATGAGGCGAAG
TTGTATTTACACAATTCTTTCATATCTCGAAACCTAGATACAGGGCTACG
TGGAGCATTTGTATTTGTATTGTTATTATTACCGGGCAAGCCGCCGGGGC
GAACGAGGATATCGTGCGGAGGGACAGGGGCGGTGTAGGAGAAGGCGTGT
ACCTGTGGGCTGGCTAGCTGTACAAGGGCATGGCGTCGCAGGTGGAGCGA
ATCAAGTGGGTCGAAGGCACCTCCTTCCTCGTGGACGGCTTTGGGTTTAC
CTCGCCCAAATGCTCTGCCTATTTCTTGACGCACTACCACAGTGATCACT
ACTGGGGCCTGAGACCGTCTTTCAGCAAAGGCACTATCTTCTGCAGCGAG
ATCACGGGCGCCCTTCTTATCGGCAAGCTAGGAATCAAGCCCCAATTTGT
ACACATGCTGCCCATGGAGAGACCCACCACCATAGAGGTACGACCTCCCT
CTCTTCCAACCTCACCTGGTGGGTTGAAGCCTTCCTCCCTCCCTCCCTTC
TCCCGCCTTCCACTTTCTAGGGCGTGGAAGTCACTCTGCTAGATGCAAAC
CATTGCCCTGGCGCCGTCATGCTGGTCTTTCACCTCAAGCGTGCGAACAA
GACGATCCTCCACACGGGCGATTTCCGTGCTAGCGATGGATTGAGGGCGA
GGATGACGGCCTGGCTGCGGGCGAGGGGGAGGAAGATCGACACTGTTTAC
CTGGACACCACCTACTGCAATCACAAGTACACCTTTCCTTCCCAGGCCTC
CGTCCTCGCCTCGCTATCTCTCCTGGCCCGGCGGGAGAAGGAGGCCGCTC
CCTCCACCCTCTTCTACGTGGGCACCTACAGCATCGGCAAGGAGCGGGCC
GTCCGCGCCGTGGCAGAAGGGATAGGCAGCAAGGTATACGCGGACAAGCA
CAAGGAGCGGACCTTACGCCTCGCAGGGGAGTGGGACGACGGCCTCTATT
CCTCCGATGCTAGGGAATGCTCCGTCAGGATGGCCTGGCTGGGGAGGCTG
AGGGCCGAGAAAATGAGGGCGGGGGGGAGGAAGGGGGGCGGAAGGCTGAA
AGGGCAGGAGGAGCTGCAACAGGAGCAACGGAAGCAACAGGATCGAGGGA
GGACGGAGGAAAAGGAGGAGGAAGGGGGGAGAAAGGTGTTGGGGCGGGAA
CAGGATGGAGAGAGAACGGATAAGGAGGGGGAGGAGGAAGAAGGGAAAGA
AGGGAGAGAGGGAGGGGCAAAAACGAGTACACTGCAGCAGTCGCTTGGAA
TGGAGGGGGAAAATGAGAGGGTTGAGGGGTATGCGTGGGAGGAGGAGGAG
GAAGAAGAGGAGGAGGGGGAGGAGGGGAAGGAGGGGGGGGAGGGGGGACA
AGACGACGACGACGGGGAGGAGGCAGTCAAGCAACTTGAAAATGAGGGGG
AAGAGGAGGAGGAGGAGGAGGAGGAGGTAGGCGCCCGAAGGCCAGTCGTT
GGCTTTCGTCCCACGGGCTGGAGCTTCACCCGGAACAAGAAGAAGAAGGG
CAAGGACGACTTCCCCTCCTCCTTTACCTCCCTCCCTGCGCCCCCCTCCT
CCTACACCCCCTGGATCAACGAGGAGGAAGGCGCCAAGCTGTACTTTGTC
CCCTACTCCGAGCACTCTTCTTACACTGAATTGAGGGCATTTATCAGAGC
GATACGGCCCAGGAAAATCATACCCACCGTAAGTGCAGGCGACGAGAAAG
CCGTGGAGCGGCAACTGAAACATTTCCTCCCTGACATGGACCTATCCCAA
GATCGGGCTCGTCTCGATAGTTACTTCATGGGGGGAGAAAGAGGGGGAGG
AAGAGAGGGAGGGAGGGTGGGTGGGAGAGAGGGAGAGGGAGGAGCAAGAG
GGAGAGGACGAGGGATGGATTTGGGTGAAGTGGATGTGAAAGAGCAGGTG
CAGCGATGGGCGGAGCTAGTGGGGCGCGATGGCAAAGAGGAGGGAGGAGG
AAGAGAAGTGGAAATGAAGCGGACAAAGGAGGAGAAGAGAATGAAGAGAA
AAGCGGTTGTGGAGGTGGTGCTAATCGATGATGACGATGATTGAGGAGTT
AGATAAGAGGACGGATGTGGATATGTACAGAAAATAGAAAATGAATAACC
TTCCCTGCTGGGCCCA
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protein sequence of NO26G00100.2

>NO26G00100.2-protein ID=NO26G00100.2-protein|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MLVFHLKRANKTILHTGDFRASDGLRARMTAWLRARGRKIDTVYLDTTYC
NHKYTFPSQASVLASLSLLARREKEAAPSTLFYVGTYSIGKERAVRAVAE
GIGSKVYADKHKERTLRLAGEWDDGLYSSDARECSVRMAWLGRLRAEKMR
AGGRKGGGRLKGQEELQQEQRKQQDRGRTEEKEEEGGRKVLGREQDGERT
DKEGEEEEGKEGREGGAKTSTLQQSLGMEGENERVEGYAWEEEEEEEEEG
EEGKEGGEGGQDDDDGEEAVKQLENEGEEEEEEEEEVGARRPVVGFRPTG
WSFTRNKKKKGKDDFPSSFTSLPAPPSSYTPWINEEEGAKLYFVPYSEHS
SYTELRAFIRAIRPRKIIPTVSAGDEKAVERQLKHFLPDMDLSQDRARLD
SYFMGGERGGGREGGRVGGREGEGGARGRGRGMDLGEVDVKEQVQRWAEL
VGRDGKEEGGGREVEMKRTKEEKRMKRKAVVEVVLIDDDDD*
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mRNA from alignment at chr26:27708..31439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00100.2 ID=NO26G00100.2|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=mRNA|length=3732bp|location=Sequence derived from alignment at chr26:27708..31439- (Nannochloropsis oceanica)
GCGGTTTCCTTCGTGTGTCTGTTGCATGTGAGGGACGAGGGGGAGGAAGC GAGGCGTTCGTTACTTAGGGCGAGATACATGAATGGTGAGGGGCACCTCA TAGTCGCGAGTGTGCAGACAAGGAAATCGCGCAGGCTCCCTCGGGCACAT TTAAGCCAAAGGCCTGGGAGGAGGCCGCGGAGGAGGAAGAGGAGAAGGAG GAGGCCCAGCACGAAAAGAAGCATGCGCCTATCTCTTCCGTGAGAACAAA AGCCTCGCCATCTCGTCTTCCAGCCCTCCCTTGTCTCGAGGAGCCAAAAC TGTAAATGTGGCTGTACATCCAGGCCGCTTTGTTGCTGTTGGAGGGAGAG TGAGGAGTGGTTCGGATGTGGACAGGCCAGGCGAAGGGAATCACAAGGTG TATCTACCGAACTGGACAGAAGAAGCTAGCGATGGAGGACCCGGGAATGA GTAATGAGGCGAACGCAGACACAGAGTGCTGCAGCGGGGCAGTGGGTTTG AGCGATGCCTTGCCTTGACCAGCTCCAGGGTCAAAGTGTATGAGGCGAAG TTGTATTTACACAATTCTTTCATATCTCGAAACCTAGATACAGGGCTACG TGGAGCATTTGTATTTGTATTGTTATTATTACCGGGCAAGCCGCCGGGGC GAACGAGGATATCGTGCGGAGGGACAGGGGCGGTGTAGGAGAAGGCGTGT ACCTGTGGGCTGGCTAGCTGTACAAGGGCATGGCGTCGCAGGTGGAGCGA ATCAAGTGGGTCGAAGTACGTTGTTCCCGTGGTGATGGGTGGATAGGGTG GAGGGTTGATGAGAGGCGTGCCCAACTTTCCGTCTCTTCCTTGCCCTGTG GCGTCACCTACCTCCTGCTTCCGATTATAGTGGAAAATGTGCCTGTCATA CCTCAATCCTTCCCGCCCTCTCTTCATTCCCTGACTGCTATTAGGGCACC TCCTTCCTCGTGGACGGCTTTGGGTTTACCTCGCCCAAATGCTCTGCCTA TTTCTTGACGCACTACCACAGTGATCACTACTGGGGCCTGAGACCGTCTT TCAGCAAAGGTCAGGAGAGAAAGGGACGAAGAGGAGACTGAGACGGGTGG ATGCGAGTGTTTCTACCTACGAGATCGAGTGATACATGCCTCCTTTCGCG TCGCATTGCCTTCACACCCAGCCCTCCCTCCCTCACTCCCTCACCCTCCT CCTTTCCTTCCTTCCTCAACCTTTCCTCCGCAGGCACTATCTTCTGCAGC GAGATCACGGGCGCCCTTCTTATCGGCAAGCTAGGAATCAAGCCCCAATT TGTACACATGCTGCCCATGGAGAGACCCACCACCATAGAGGTACGACCTC CCTCTCTTCCAACCTCACCTGGTGGGTTGAAGCCTTCCTCCCTCCCTCCC TTCTCCCGCCTTCCACTTTCTAGGGCGTGGAAGTCACTCTGCTAGATGCA AACCATTGCCCTGGCGCCGTCATGCTGGTCTTTCACCTCAAGCGTGGTAG GGAGGGAGGGAGGAAGGGAGGGAAGGAGGGGCAAAGGAAGTGTTTTCACA CCCTCATGCACATCCACAGCCACACCCATCCCTCTTTTCCTCCCTTTCCC CCCCCTTCTTTTTCTCTCCCCCCCCCTCCAGCGAACAAGACGATCCTCCA CACGGGCGATTTCCGTGCTAGCGATGGATTGAGGGCGAGGATGACGGCCT GGCTGCGGGCGAGGGGGAGGAAGATCGACACTGTTTACCTGGACACCACC TACTGCAATCACAAGGCATGCCCTCCCTCTCTCTCCCTCCCTTTCTTTCA CCTTCTTTTCCATTTCCACTGAATGACGGTATCAAGCCAACTCACCATCT CTCCCTCCCTCTCTCCCTCCCTTCCTCCTTCCAGTACACCTTTCCTTCCC AGGCCTCCGTCCTCGCCTCGCTATCTCTCCTGGCCCGGCGGGAGAAGGAG GCCGCTCCCTCCACCCTCTTCTACGTGGGCACCTACAGCATCGGCAAGGA GCGGGCCGTCCGCGCCGTGGCAGAAGGGATAGGTTGGGAAGGAGGGATGG AGGGAGGGAGGGAGGGAGGGAATGTCCTTCATTGTGTCTTTCCCTCTTCA CACTTCCACCTTATTCCCTCGCCATCTACCTCTCTCTCTCCCTCCCTCCC CTCTTCCCTTTCTCCCTCCGCCCGTGGCTTTCTCTTGCCCAGGCAGCAAG GTATACGCGGACAAGCACAAGGAGCGGACCTTACGCCTCGCAGGGGAGTG GGACGACGGCCTCTATTCCTCCGATGCTAGGGAATGCTCCGTCAGGATGG CCTGGCTGGGGAGGCTGAGGGCCGAGAAAATGAGGGCGGGGGGGAGGAAG GGGGGCGGAAGGCTGAAAGGGCAGGAGGAGCTGCAACAGGAGCAACGGAA GCAACAGGATCGAGGGAGGACGGAGGAAAAGGAGGAGGAAGGGGGGAGAA AGGTGTTGGGGCGGGAACAGGATGGAGAGAGAACGGATAAGGAGGGGGAG GAGGAAGAAGGGAAAGAAGGGAGAGAGGGAGGGGCAAAAACGAGTACACT GCAGCAGTCGCTTGGAATGGAGGGGGAAAATGAGAGGGTTGAGGGGTATG CGTGGGAGGAGGAGGAGGAAGAAGAGGAGGAGGGGGAGGAGGGGAAGGAG GGGGGGGAGGGGGGACAAGACGACGACGACGGGGAGGAGGCAGTCAAGCA ACTTGAAAATGAGGGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGTAGGCG CCCGAAGGCCAGTCGTTGGCTTTCGTCCCACGGGTGAGAGTGAGGAGGAG GAGCAGCCGCGGCAGCAAGTCTACCTCATGGTCTTTAGATTTCTAACCCA CTTCCCTCCCTCTCTCCCTCCCTCTCTCCTCCCCTCTCTCCCTCTATCAG GCTGGAGCTTCACCCGGAACAAGAAGAAGAAGGGCAAGGACGACTTCCCC TCCTCCTTTACCTCCCTCCCTGCGCCCCCCTCCTCCTACACCCCCTGGAT CAACGAGGAGGAAGGCGCCAAGCTGTACTTTGTCCCCTACTCCGAGCACT CTTCTTACACTGAATTGAGGGCATTTATCAGAGCGATACGGCCCAGGTCA GTTTTGGACCTCGTATTATTCCTTCTCTTCCTCCTTCTCTCCCTCCTTTC GCCCCTCCTCTTCTCCCTCAAAAACACATCCACCTGCCGATGAAACTTTA GAATAACGGTAGGTGAATAATCCACTTTTAAACCCTTTCTACCCCTTGCC TCCTTCCTTTTCTCTCTTCCTTTCGCAGGAAAATCATACCCACCGTAAGT GCAGGCGACGAGAAAGCCGTGGAGCGGCAACTGAAACATTTCCTCCCTGA CATGGACCTATCCCAAGATCGGGCTCGTCTCGATAGTTACTTCATGGGGG GAGAAAGAGGGGGAGGAAGAGAGGGAGGGAGGGTGGGTGGGAGAGAGGGA GAGGGAGGAGCAAGAGGGAGAGGACGAGGGATGGATTTGGGTGAAGTGGA TGTGAAAGAGCAGGTGCAGCGATGGGCGGAGCTAGTGGGGCGCGATGGCA AAGAGGAGGGAGGAGGAAGAGAAGTGGAAATGAAGCGGACAAAGGAGGAG AAGAGAATGAAGAGAAAAGCGGTTGTGGAGGTGGTGCTAATCGATGATGA CGATGATTGAGGAGTTAGATAAGAGGACGGATGTGGATATGTACAGAAAA TAGAAAATGAATAACCTTCCCTGCTGGGCCCA
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Coding sequence (CDS) from alignment at chr26:27708..31439-

>NO26G00100.2 ID=NO26G00100.2|Name=NO26G00100.2|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at chr26:27708..31439- (Nannochloropsis oceanica)
ATGCTGGTCTTTCACCTCAAGCGTGCGAACAAGACGATCCTCCACACGGG
CGATTTCCGTGCTAGCGATGGATTGAGGGCGAGGATGACGGCCTGGCTGC
GGGCGAGGGGGAGGAAGATCGACACTGTTTACCTGGACACCACCTACTGC
AATCACAAGTACACCTTTCCTTCCCAGGCCTCCGTCCTCGCCTCGCTATC
TCTCCTGGCCCGGCGGGAGAAGGAGGCCGCTCCCTCCACCCTCTTCTACG
TGGGCACCTACAGCATCGGCAAGGAGCGGGCCGTCCGCGCCGTGGCAGAA
GGGATAGGCAGCAAGGTATACGCGGACAAGCACAAGGAGCGGACCTTACG
CCTCGCAGGGGAGTGGGACGACGGCCTCTATTCCTCCGATGCTAGGGAAT
GCTCCGTCAGGATGGCCTGGCTGGGGAGGCTGAGGGCCGAGAAAATGAGG
GCGGGGGGGAGGAAGGGGGGCGGAAGGCTGAAAGGGCAGGAGGAGCTGCA
ACAGGAGCAACGGAAGCAACAGGATCGAGGGAGGACGGAGGAAAAGGAGG
AGGAAGGGGGGAGAAAGGTGTTGGGGCGGGAACAGGATGGAGAGAGAACG
GATAAGGAGGGGGAGGAGGAAGAAGGGAAAGAAGGGAGAGAGGGAGGGGC
AAAAACGAGTACACTGCAGCAGTCGCTTGGAATGGAGGGGGAAAATGAGA
GGGTTGAGGGGTATGCGTGGGAGGAGGAGGAGGAAGAAGAGGAGGAGGGG
GAGGAGGGGAAGGAGGGGGGGGAGGGGGGACAAGACGACGACGACGGGGA
GGAGGCAGTCAAGCAACTTGAAAATGAGGGGGAAGAGGAGGAGGAGGAGG
AGGAGGAGGTAGGCGCCCGAAGGCCAGTCGTTGGCTTTCGTCCCACGGGC
TGGAGCTTCACCCGGAACAAGAAGAAGAAGGGCAAGGACGACTTCCCCTC
CTCCTTTACCTCCCTCCCTGCGCCCCCCTCCTCCTACACCCCCTGGATCA
ACGAGGAGGAAGGCGCCAAGCTGTACTTTGTCCCCTACTCCGAGCACTCT
TCTTACACTGAATTGAGGGCATTTATCAGAGCGATACGGCCCAGGAAAAT
CATACCCACCGTAAGTGCAGGCGACGAGAAAGCCGTGGAGCGGCAACTGA
AACATTTCCTCCCTGACATGGACCTATCCCAAGATCGGGCTCGTCTCGAT
AGTTACTTCATGGGGGGAGAAAGAGGGGGAGGAAGAGAGGGAGGGAGGGT
GGGTGGGAGAGAGGGAGAGGGAGGAGCAAGAGGGAGAGGACGAGGGATGG
ATTTGGGTGAAGTGGATGTGAAAGAGCAGGTGCAGCGATGGGCGGAGCTA
GTGGGGCGCGATGGCAAAGAGGAGGGAGGAGGAAGAGAAGTGGAAATGAA
GCGGACAAAGGAGGAGAAGAGAATGAAGAGAAAAGCGGTTGTGGAGGTGG
TGCTAATCGATGATGACGATGATTGA
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Synonyms
Publications