NO26G00070.2, NO26G00070.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G00070.2
Unique NameNO26G00070.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2379
Alignment locationchr26:17600..20499 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:17600..20499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO26G00070.2 vs.
Match: EWM23038.1 (Nucleotide-sugar transporter [Nannochloropsis gaditana])

HSP 1 Score: 372.5 bits (955), Expect = 1.600e-99
Identity = 212/329 (64.44%), Postives = 251/329 (76.29%), Query Frame = 0 
Query:   64 PSPPSSSSPPTLRRRLCSSMASSKRLSSSSTSLSSSYSFSSTTTPHRKPKKASSLSTAGKGGDLLTSGYFYMALLALQFGMQPILVRAFIPKSTPKMPIVMATEAVKILLCAVGLLVTEKKSARDKMWATWTFRESLRLGAVPAALYALQNTMAQFGYQYLDSLSFNLLNQTKTLAAAVCLYFVLGKKQTPLQLVALCMLLTASIILNWPASASSSSSSSSLPVDPLTFTMGVVPCLLASLTSGVCAALTQKTLQGLSRNSYLYSAELAFYGQICLALLIAARYITDTGGEDAPSFSLPEGVGPLTLLPVVMNAAGGIIVGLVTKYAGG 393
            PSP S+SSP   RRR  +                      ST +P R+ +     S+  + G +  SGYFYM+LLALQFG+QP+LVRAFIP S PKM +VMATE+VKILLCA+GL VTE K +R K+WATWT RESLR+ A+PA+LYALQNTMAQFGYQYLDSLSFNLLNQTKTLAAAVCLY V+G+KQTPLQLVAL MLL ASIILNWP+++ +SS S     DP TFT+GV+P LLASLTSGVCAALTQKTLQG SRNSYL+SAELA YGQ+CL++++ ++Y   + G    S SLP+ + PL LLPVV+NAAGGIIVGLVTKYAGG
Sbjct:    9 PSPSSASSPSPPRRRRPAPR--------------------STPSPPRRAR-GHRTSSVSRTGSVFQSGYFYMSLLALQFGLQPLLVRAFIPTSLPKMLVVMATESVKILLCALGLWVTETKDSRAKLWATWTVRESLRVAALPASLYALQNTMAQFGYQYLDSLSFNLLNQTKTLAAAVCLYVVMGRKQTPLQLVALGMLLVASIILNWPSASPASSPS----YDPTTFTLGVLPVLLASLTSGVCAALTQKTLQGASRNSYLFSAELALYGQVCLSVIVVSKYFFSSPG--TSSLSLPKNLSPLALLPVVINAAGGIIVGLVTKYAGG 310
The following BLAST results are available for this feature:
BLAST of NO26G00070.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23038.11.600e-9964.44Nucleotide-sugar transporter [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G00070NO26G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G00070.2NO26G00070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G00070.2.cds1NO26G00070.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00070.2.cds2NO26G00070.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00070.2.cds3NO26G00070.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00070.2.cds4NO26G00070.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G00070.2.cds5NO26G00070.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G00070.2 ID=NO26G00070.2|Name=NO26G00070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2379bp
ACTGAGGACGATCAATCGGCCTGTGTGACGTGTTGGTGTGGCGTGGTGGT
AATGTACGTGGGTATGGATGAGGGAGATGCCTGGTATGCACATGATGACG
GGTCCAAGCCCGATGGTGCGTGAAGCAGGCGAAGGGAGGGACGGCCAGAT
TAAGGATCAGGTCTACATGCATGACGTCCCTTCCCTATTTTTCCTCCTCT
TCCTCCTCTTCTTTCTTGATTTTGACGTGCTGACGCTCCACCACGAGCCT
TAATCCTTGCCACGGGAAGGGCAAGCAGGGTGCAAGAAGAAGTATAACGT
GGATACTTTGTGTCCTCAGATGAAGAAAGCCGAGGGGTCATCGTATGTAG
GACACGACAACCAGATGCCGTCGCGAGCATGGCCTTCGCGATAACCACCT
GTGACTGACCTATCACGAGAATTCGCCCTGTAGCGGACTTGCGGGAGAAA
AAAGCTCGCCTGGTGAAATCGCACTCGGGGTCGTTGCCCACTGCCTTTTC
TCGAGTCCAAAGAAGCAGGAGGCAGATCGTCTCATCCTCCCGGGGCGAAA
AAGCGGCTCGACCAGTCCGCTTGTGGCCATGTAGCACTAGCACTGCAACC
TGCAGTAACAGAACAAAGGACGTGGAGGTCGAGGCCTTTCAATCTTCTTG
CATGCTTCTTCCATTTATCACAAATGGCATCATCAATTCTCTCCCCCAAT
AGCCTCGCTCCACGAAATGACGGCTCAACACGCCCTCCCTCCACTTCCGA
CAGTCCCTTCATACAGGCCCCTACACCTGGCCCAGCGCCCCCAGTCCAAC
ATTAAAACCCGCTCCTCTTCCCGTGGTTCCTGTCACGCCGCGTCTTCCTC
CTCCCCGTCGTCCTCGTTCTCTCCAACTACCAAACAACCCGCTCGCGCCG
TCCCGCCCTCCCCGCCCTCCTCCTCCTCCCCTCCCACCCTCCGCCGGCGC
CTCTGTTCCTCCATGGCGTCTTCAAAACGTCTCTCTTCCTCTTCCACCTC
CCTCTCCTCCTCCTACTCCTTCTCCTCCACTACCACGCCACACCGCAAAC
CGAAAAAAGCGTCGTCGTTATCAACAGCTGGCAAGGGCGGCGACCTCCTC
ACCTCGGGCTACTTCTACATGGCCCTCCTCGCCCTCCAGTTTGGCATGCA
GCCCATCCTCGTGCGCGCCTTCATCCCCAAAAGCACGCCCAAGATGCCGA
TTGTGATGGCCACGGAAGCCGTCAAGATCCTCCTCTGTGCCGTGGGACTG
CTTGTCACGGAGAAAAAGAGTGCGCGAGACAAGATGTGGGCAACGTGGAC
GTTCAGGGAGAGCCTTCGTCTCGGTGCAGTCCCCGCGGCTCTGTACGCCC
TTCAGAACACCATGGCTCAGTTCGGCTACCAATACCTGGACTCGCTCTCC
TTCAACCTGCTCAACCAAACGAAGACCTTGGCTGCCGCCGTGTGCCTCTA
CTTTGTCTTGGGAAAGAAGCAGACGCCTCTTCAGTTGGTCGCCTTGTGCA
TGCTGCTCACTGCCTCCATAATCCTCAACTGGCCTGCTTCCGCCTCCTCC
TCCTCCTCCTCCTCCTCCCTTCCTGTGGACCCCCTCACTTTCACAATGGG
CGTCGTACCATGCCTCCTCGCGTCTCTCACGTCAGGTGTCTGCGCAGCCC
TGACCCAGAAGACTCTCCAAGGGCTGTCTCGGAACAGCTACCTCTACTCT
GCGGAGCTTGCATTCTACGGGCAGATCTGCCTGGCCCTCCTCATCGCGGC
GAGATACATAACTGATACTGGTGGTGAAGACGCTCCCTCCTTCTCCCTGC
CCGAGGGCGTAGGTCCCCTAACCCTTCTCCCCGTCGTGATGAACGCTGCC
GGTGGCATCATCGTGGGCCTAGTCACTAAGTATGCGGGAGGTAAGTGAAG
GATAGGAAAGGGGGAAAGAGCTGAGGAAGAAGTGTGGAAACGATGCCTGT
TCGTCATGTTTCAAGGGGAGTGCATCGTGCTGGTTCTCACTCCCCTTCCC
ATCGTCTCCCCCCCCAGGCGTGAAAAAGGGTTTCGCCCTCATCGCTGGAA
TTGCCCTGACAGCTTTCTGTCAGTCCGTGGCCCAACAGACCCCCCCCTCG
CGCCTTCACTTGTTTGCTGCCTGTCTCGTGGCACTGTCCACCCACTTGCA
CGCCAAGCACAATGACGCCTGGTACGCGGAAAGGGCAGCGAAGAAGGGGA
TGTGACGAGGAGGAAGGAGAGGGAGGGGAGGAAAAGGGCTGTATAATAAA
TAATGAGGATAAACAATACGGGACTACAAAGAGAAGAGATATCTCTTTTG
CGAAAGAATGACAACAAAATGAAAAAGGGAAAAGAATTAACGAGGTTGAC
ATTGAATTCAACCAGACCTCTGCTTTTCA
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protein sequence of NO26G00070.2

>NO26G00070.2-protein ID=NO26G00070.2-protein|Name=NO26G00070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MTAQHALPPLPTVPSYRPLHLAQRPQSNIKTRSSSRGSCHAASSSSPSSS
FSPTTKQPARAVPPSPPSSSSPPTLRRRLCSSMASSKRLSSSSTSLSSSY
SFSSTTTPHRKPKKASSLSTAGKGGDLLTSGYFYMALLALQFGMQPILVR
AFIPKSTPKMPIVMATEAVKILLCAVGLLVTEKKSARDKMWATWTFRESL
RLGAVPAALYALQNTMAQFGYQYLDSLSFNLLNQTKTLAAAVCLYFVLGK
KQTPLQLVALCMLLTASIILNWPASASSSSSSSSLPVDPLTFTMGVVPCL
LASLTSGVCAALTQKTLQGLSRNSYLYSAELAFYGQICLALLIAARYITD
TGGEDAPSFSLPEGVGPLTLLPVVMNAAGGIIVGLVTKYAGGK*
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mRNA from alignment at chr26:17600..20499+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G00070.2 ID=NO26G00070.2|Name=NO26G00070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2900bp|location=Sequence derived from alignment at chr26:17600..20499+ (Nannochloropsis oceanica)
ACTGAGGACGATCAATCGGCCTGTGTGACGTGTTGGTGTGGCGTGGTGGT
AATGTACGTGGGTATGGATGAGGGAGATGCCTGGTATGCACATGATGACG
GGTCCAAGCCCGATGGTGCGTGAAGCAGGCGAAGGGAGGGACGGCCAGAT
TAAGGATCAGGTCTACATGCATGACGTCCCTTCCCTATTTTTCCTCCTCT
TCCTCCTCTTCTTTCTTGATTTTGACGTGCTGACGCTCCACCACGAGCCT
TAATCCTTGCCACGGGAAGGGCAAGCAGGGTGCAAGAAGAAGTATAACGT
GGATACTTTGTGTCCTCAGATGAAGAAAGCCGAGGGGTCATCGTATGTAG
GACACGACAACCAGATGCCGTCGCGAGCATGGCCTTCGCGATAACCACCT
GTGACTGACCTATCACGAGAATTCGCCCTGTAGCGGACTTGCGGGAGAAA
AAAGCTCGCCTGGTGAAATCGCACTCGGGGTCGTTGCCCACTGCCTTTTC
TCGAGTCCAAAGAAGCAGGAGGCAGATCGTCTCATCCTCCCGGGGCGAAA
AAGCGGCTCGACCAGTCCGCTTGTGGCCATGTAGCACTAGCACTGCAACC
TGCAGTAACAGAACAAAGGACGTGGAGGTCGAGGCCTTTCAATCTTCTTG
CATGCTTCTTCCATTTATCACAAATGGCATCATCAATTCTCTCCCCCAAT
AGCCTCGCTCCACGAAATGACGGCTCAACACGCCCTCCCTCCACTTCCGA
CAGTCCCTTCATACAGGCCCCTACACCTGGCCCAGCGCCCCCAGTCCAAC
ATTAAAACCCGCTCCTCTTCCCGTGGTTCCTGTCACGCCGCGTCTTCCTC
CTCCCCGTCGTCCTCGTTCTCTCCAACTACCAAACAACCCGCTCGCGCCG
TCCCGCCCTCCCCGCCCTCCTCCTCCTCCCCTCCCACCCTCCGCCGGCGC
CTCTGTTCCTCCATGGCGTCTTCAAAACGTCTCTCTTCCTCTTCCACCTC
CCTCTCCTCCTCCTACTCCTTCTCCTCCACTACCACGCCACACCGCAAAC
CGAAAAAAGCGTCGTCGTTATCAACAGCTGGCAAGGGCGGCGACCTCCTC
ACCTCGGGCTACTTCTACATGGCCCTCCTCGCCCTCCAGTTTGGCATGCA
GCCCATCCTCGTGCGCGCCTTCATCCCCAAAAGCACGCCCAAGATGCCGA
TTGTGATGGCCACGGAAGCCGTCAAGATCCTCCTCTGTGCCGTGGGACTG
CTTGTCACGGAGAAAAAGAGTGCGCGAGACAAGATGTGGGCAACGTGGAC
GTTCAGGCAAGAGACTCAGCAAAACTCCCTGCCTCCCTCCCTTCATTCTT
TCCTTCCTCTCTCTTTCACTCCTATCTTACCGCTCCCCATTCCACTCTTT
TTCTCATGCCACAATTACCTTCCCCCCCCCAATCTCTCAGGGAGAGCCTT
CGTCTCGGTGCAGTCCCCGCGGCTCTGTACGCCCTTCAGAACACCATGGC
TCAGTTCGGCTACCAATACCTGGACTCGCTCTCCTTCAACCTGCTCAACC
AAACGAAGGTTCGAACAATCACCTGCCCTGCTTTCCCTCTCCCACAGCCT
CCTACTTCCGCGACCATCCCCCTCACCTCCCTCCTTCCCTCCCTCCCTCC
CTTACTCCCTCCCTCCCTCCCCAGACCTTGGCTGCCGCCGTGTGCCTCTA
CTTTGTCTTGGGAAAGAAGCAGACGCCTCTTCAGTTGGTCGCCTTGTGCA
TGCTGCTCACTGCCTCCATAATCCTCAACTGGCCTGCTTCCGCCTCCTCC
TCCTCCTCCTCCTCCTCCCTTCCTGTGGACCCCCTCACTTTCACAATGGG
CGTCGTACCATGCCTCCTCGCGTCTCTCACGTCAGGTAATCAGAGGATGT
GTGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGAGAGAGAGGGAAAGA
GGGAGGGAAGGGAGTCCAGAAATGCCTCCTCCCCATGCCTCATCACAAAT
TCTCCCTCCCTCCCCTCCCTCCTTCCCCTCGCTCGCTCGCTCTCTCCCTT
CCAGGTGTCTGCGCAGCCCTGACCCAGAAGACTCTCCAAGGGCTGTCTCG
GAACAGCTACCTCTACTCTGCGGAGCTTGCATTCTACGGGCAGATCTGCC
TGGCCCTCCTCATCGCGGCGAGATACATAACTGATACTGGTGGTGAAGGT
GAGTGCCGGTCCTCCTTCCCTCCCTCCCTCCCTCCTTCCCTCTTTCGCAA
CGTTTTTGACACACCTCTCCCTCCCTCTCCCCCTTCCTACCCTCCCTCAG
ACGCTCCCTCCTTCTCCCTGCCCGAGGGCGTAGGTCCCCTAACCCTTCTC
CCCGTCGTGATGAACGCTGCCGGTGGCATCATCGTGGGCCTAGTCACTAA
GTATGCGGGAGGTAAGTGAAGGATAGGAAAGGGGGAAAGAGCTGAGGAAG
AAGTGTGGAAACGATGCCTGTTCGTCATGTTTCAAGGGGAGTGCATCGTG
CTGGTTCTCACTCCCCTTCCCATCGTCTCCCCCCCCAGGCGTGAAAAAGG
GTTTCGCCCTCATCGCTGGAATTGCCCTGACAGCTTTCTGTCAGTCCGTG
GCCCAACAGACCCCCCCCTCGCGCCTTCACTTGTTTGCTGCCTGTCTCGT
GGCACTGTCCACCCACTTGCACGCCAAGCACAATGACGCCTGGTACGCGG
AAAGGGCAGCGAAGAAGGGGATGTGACGAGGAGGAAGGAGAGGGAGGGGA
GGAAAAGGGCTGTATAATAAATAATGAGGATAAACAATACGGGACTACAA
AGAGAAGAGATATCTCTTTTGCGAAAGAATGACAACAAAATGAAAAAGGG
AAAAGAATTAACGAGGTTGACATTGAATTCAACCAGACCTCTGCTTTTCA
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Coding sequence (CDS) from alignment at chr26:17600..20499+

>NO26G00070.2 ID=NO26G00070.2|Name=NO26G00070.2|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr26:17600..20499+ (Nannochloropsis oceanica)
ATGACGGCTCAACACGCCCTCCCTCCACTTCCGACAGTCCCTTCATACAG
GCCCCTACACCTGGCCCAGCGCCCCCAGTCCAACATTAAAACCCGCTCCT
CTTCCCGTGGTTCCTGTCACGCCGCGTCTTCCTCCTCCCCGTCGTCCTCG
TTCTCTCCAACTACCAAACAACCCGCTCGCGCCGTCCCGCCCTCCCCGCC
CTCCTCCTCCTCCCCTCCCACCCTCCGCCGGCGCCTCTGTTCCTCCATGG
CGTCTTCAAAACGTCTCTCTTCCTCTTCCACCTCCCTCTCCTCCTCCTAC
TCCTTCTCCTCCACTACCACGCCACACCGCAAACCGAAAAAAGCGTCGTC
GTTATCAACAGCTGGCAAGGGCGGCGACCTCCTCACCTCGGGCTACTTCT
ACATGGCCCTCCTCGCCCTCCAGTTTGGCATGCAGCCCATCCTCGTGCGC
GCCTTCATCCCCAAAAGCACGCCCAAGATGCCGATTGTGATGGCCACGGA
AGCCGTCAAGATCCTCCTCTGTGCCGTGGGACTGCTTGTCACGGAGAAAA
AGAGTGCGCGAGACAAGATGTGGGCAACGTGGACGTTCAGGGAGAGCCTT
CGTCTCGGTGCAGTCCCCGCGGCTCTGTACGCCCTTCAGAACACCATGGC
TCAGTTCGGCTACCAATACCTGGACTCGCTCTCCTTCAACCTGCTCAACC
AAACGAAGACCTTGGCTGCCGCCGTGTGCCTCTACTTTGTCTTGGGAAAG
AAGCAGACGCCTCTTCAGTTGGTCGCCTTGTGCATGCTGCTCACTGCCTC
CATAATCCTCAACTGGCCTGCTTCCGCCTCCTCCTCCTCCTCCTCCTCCT
CCCTTCCTGTGGACCCCCTCACTTTCACAATGGGCGTCGTACCATGCCTC
CTCGCGTCTCTCACGTCAGGTGTCTGCGCAGCCCTGACCCAGAAGACTCT
CCAAGGGCTGTCTCGGAACAGCTACCTCTACTCTGCGGAGCTTGCATTCT
ACGGGCAGATCTGCCTGGCCCTCCTCATCGCGGCGAGATACATAACTGAT
ACTGGTGGTGAAGACGCTCCCTCCTTCTCCCTGCCCGAGGGCGTAGGTCC
CCTAACCCTTCTCCCCGTCGTGATGAACGCTGCCGGTGGCATCATCGTGG
GCCTAGTCACTAAGTATGCGGGAGGTAAGTGA
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Synonyms
Publications