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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr25 | genome | chr25:632781..636746 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G02020.1 vs.
Match: EWM23549.1 (potassium:hydrogen antiporter [Nannochloropsis gaditana]) HSP 1 Score: 389.4 bits (999), Expect = 1.600e-104 Identity = 223/453 (49.23%), Postives = 302/453 (66.67%), Query Frame = 0
Query: 38 SATSSSSIYHQPEGGIMSGNGVLEDTLSLFMVQAVIIICVTRFLSLGTKFLKQPRVIMEVVGGILLGPSALGHIPGYLDTVFPAESLGYLALVANLGLVLYLFLVGVELDPEVLRRNGQKAISIAVVGIALPFGLGCLISPLLFNKLLLKDPGYENAAYSSFLVFVGVAMSITAFPVLARILTESKLILSTAGVMTMGAAALNDAIAWCLLVLALSIVHSGRNKLTALFVFLAIAAYAIFLFVAVRPALQAVVRWVEMTGSSSLRSLLFALLICCIFISAWITAFLGVHAIFGSFLVGMIMPRDGKFTLHMCEKIDDLVSNIFLPLYFALSGLKTDIASIGHAIGVALLVLVVLMATAGKFIGCAGAARLNG-IPWRESCVIGILMNTRGLVELIVLNLGLQAKMLDVEIFTIMVMMALITTFITSPLVEYIYPPHMRLQASVDSLKAMGTVL 490
+ T+S S + + GG+++G L T++LF++Q VII+ TR L+ G +LKQPRVI E++ GILLGPS +G+IPG+L VFP SL +L L AN+GL+LY+FLVG+EL P L N ++++ I+ VGI PF LGC S +L+ E +SSFL+F G+++SITAFP+LARILT+ L+ + GVMT+GAAAL DA+AWC L+L +SI+HS L AL+VF + AY L + RP L + GS +L+ L AL IF+SA++T GVH IFGSFL+G+ P + TL + + I+D S +FLPLYFA SGL+T +AS+ L +LV+ +A GKF+GCA AARL G +PWRES +G LMNTRGLVELIVLNLGL A ++DVE FTI V+MAL+TTF T P+V +YP R++ S G +L
Sbjct: 6 TTTASPSDHSEVTGGVLAGANPLHSTVALFLLQVVIIMATTRILAYGLHYLKQPRVIAEILAGILLGPSGMGNIPGWLSNVFPDRSLPFLTLAANVGLILYMFLVGLELTPGALWTNARQSVLISTVGIVFPFLLGCGGSVVLYR----HRKNTEEVPFSSFLLFTGLSLSITAFPILARILTDLNLMETEVGVMTIGAAALGDAVAWCFLILVISILHSS-TLLNALYVFCIVLAYGALLLLLGRPLLSRHLGRAARAGSETLQRSLLALTFMAIFLSAFLTDLAGVHTIFGSFLLGLAFPINPS-TLRLAKTIEDFASIVFLPLYFAASGLRTQLASLSSLRAFLLFLLVLTIAVVGKFVGCAAAARLGGKMPWRESFSVGALMNTRGLVELIVLNLGLDAGVIDVEQFTIFVLMALVTTFATCPVVSCLYPVEKRVKFGTRSAVEGGKLL 452
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G02020.1 ID=NO25G02020.1|Name=NO25G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp ATGGAGGCCGCTGCGGCAGCAGCAGCAGCAGCTACTGCAAGAGCAGGGAC AGGGCACCATGCCGGGGACCTTGTCCAGTCGGTCCATCGATTGTTGCAGA CAGCGGAGGCAAGCGCGACATCGAGTAGCTCCATATATCACCAGCCGGAG GGAGGGATTATGTCAGGGAATGGCGTGTTAGAAGATACGCTGTCGTTGTT CATGGTCCAGGCGGTCATCATTATCTGCGTGACGCGATTCCTCTCCCTGG GGACCAAGTTTCTGAAACAGCCTCGCGTGATCATGGAGGTGGTGGGCGGC ATCTTGCTAGGCCCCTCCGCCCTTGGGCATATTCCTGGCTACCTCGACAC GGTATTCCCCGCAGAGTCGCTAGGTTACCTGGCCCTCGTGGCCAACTTGG GCCTCGTCCTCTACCTTTTCCTCGTGGGCGTCGAGCTTGATCCAGAGGTC CTCCGTCGTAATGGGCAGAAGGCCATTTCCATCGCCGTGGTCGGCATCGC GCTGCCCTTCGGCTTGGGCTGCCTCATCTCCCCCCTGCTCTTCAACAAGC TGCTGCTCAAGGACCCCGGATACGAGAACGCCGCCTACTCTTCCTTCCTG GTGTTCGTGGGCGTGGCTATGTCCATTACAGCCTTCCCCGTTCTTGCCCG CATTCTCACGGAGAGCAAGCTCATCTTGTCTACGGCTGGCGTGATGACCA TGGGCGCCGCGGCTCTGAACGACGCCATCGCCTGGTGCCTCCTCGTCCTG GCCCTCTCTATCGTCCACTCGGGCCGGAACAAGCTTACGGCCCTCTTCGT CTTTCTCGCCATTGCCGCCTACGCCATCTTCCTCTTCGTCGCTGTCCGCC CGGCCCTCCAGGCCGTCGTCAGATGGGTCGAGATGACAGGCTCCTCCTCC CTTCGCTCCCTCCTCTTCGCCCTACTCATCTGCTGTATCTTCATCTCAGC CTGGATCACGGCATTCTTGGGGGTACACGCCATCTTCGGCTCCTTTTTGG TGGGGATGATCATGCCGCGCGACGGGAAGTTCACCCTGCACATGTGCGAG AAGATCGACGATCTCGTCAGCAACATCTTTCTCCCCCTTTATTTCGCCCT CTCAGGCCTTAAGACCGACATTGCATCCATCGGGCATGCCATCGGTGTGG CGCTGCTGGTGCTGGTGGTTCTGATGGCTACTGCGGGGAAATTTATTGGC TGTGCCGGCGCGGCCCGTCTGAACGGCATCCCCTGGCGGGAGTCTTGCGT GATCGGCATCCTTATGAACACGCGCGGCCTCGTGGAGCTGATTGTGCTCA ATCTGGGCCTGCAGGCGAAGATGCTGGACGTGGAGATCTTCACCATTATG GTCATGATGGCCCTCATCACGACCTTCATTACCTCCCCCCTCGTAGAGTA CATCTACCCGCCCCACATGCGCCTCCAGGCTTCCGTCGACTCGCTGAAGG CAATGGGCACCGTGCTCACTCCCATCCACACTCACTGA back to topprotein sequence of NO25G02020.1 >NO25G02020.1-protein ID=NO25G02020.1-protein|Name=NO25G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp MEAAAAAAAAATARAGTGHHAGDLVQSVHRLLQTAEASATSSSSIYHQPE GGIMSGNGVLEDTLSLFMVQAVIIICVTRFLSLGTKFLKQPRVIMEVVGG ILLGPSALGHIPGYLDTVFPAESLGYLALVANLGLVLYLFLVGVELDPEV LRRNGQKAISIAVVGIALPFGLGCLISPLLFNKLLLKDPGYENAAYSSFL VFVGVAMSITAFPVLARILTESKLILSTAGVMTMGAAALNDAIAWCLLVL ALSIVHSGRNKLTALFVFLAIAAYAIFLFVAVRPALQAVVRWVEMTGSSS LRSLLFALLICCIFISAWITAFLGVHAIFGSFLVGMIMPRDGKFTLHMCE KIDDLVSNIFLPLYFALSGLKTDIASIGHAIGVALLVLVVLMATAGKFIG CAGAARLNGIPWRESCVIGILMNTRGLVELIVLNLGLQAKMLDVEIFTIM VMMALITTFITSPLVEYIYPPHMRLQASVDSLKAMGTVLTPIHTH* back to topmRNA from alignment at chr25:632781..636746- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G02020.1 ID=NO25G02020.1|Name=NO25G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=3966bp|location=Sequence derived from alignment at chr25:632781..636746- (Nannochloropsis oceanica) ATGGAGGCCGCTGCGGCAGCAGCAGCAGCAGCTACTGCAAGAGCAGGGAC
AGGGCACCATGCCGGGGACCTTGTCCAGTCGGTCCATCGATTGTTGCAGA
CAGCGGAGGCAAGCGCGACATCGAGTAGCTCCATATATCACCAGCCGGAG
GGAGGGATTATGTCAGGGAATGGCGTGTTAGAAGATACGCTGTCGTTGTT
CATGGTCCAGGTAGGAAGAGGTGATCGAGGACGGGGGGAAGGGATGGAAG
GAGGGATGGAAGGAGGGAGGGAAAGAATCAGGAAGGGAAAAGAACGATTT
GGGGTGGGAGGATCGGTCTCGGTCATGATACGCCATTTATCCGCACCCTT
GCTTTATTCCCTCTCATATTTCAGGCGGTCATCATTATCTGCGTGACGCG
ATTCCTCTCCCTGGGGACCAAGTTTCTGAAACAGCCTCGCGTGATCATGG
AGGTGGTGGGCGGCATCTTGCTAGGTAGGGAGGGAGGGAAGGGAGGGAAA
GAAGAAGAGGGACGGAATGAATTGAGCACATGTCGAAGTGCCTCCATGAT
GTACGTCACCGTCATGCTTATAAAAGCATCCCCTCCCTCTCTCTCTCCCA
CCCAATTCCCTCCCTCCCTCAGGCCCCTCCGCCCTTGGGCATATTCCTGG
CTACCTCGACACGGTATTCCCCGCAGAGTCGCTAGGTTACCTGGCCCTCG
TGGCCAACTTGGGCCTCGTCCTCTACCTTTTCCTCGTGGGCGTCGAGCTT
GATCCAGAGGTAGGAGGGTGGGAGGAAGGGAGGGAGAGAGGGAGGGAGGG
AGGGAGGGAGGGATTTCATCCAGGAATAGATTTAGGGCACCTCTCTCTTT
CGCTCTTCAACCCCCCTTTCCCCCTTCCTCCTCCTTCCTCTTTATCTTCC
TCTCTCCTCCTCTCTTCCACATTTGGTGTTGAAAAGGGAGAATGGCGTGT
CCGTCCGTCGGTCCGTCGCCGTGGGTGGGACCCATCACTCTCCTCCTCGG
ACTTCACCCGCTCACTCATCCATCCATCCCTCCCTCCCTCCCCTCAGGTC
CTCCGTCGTAATGGGCAGAAGGCCATTTCCATCGCCGTGGTCGGCATCGC
GCTGCCCTTCGGCTTGGGCTGCCTCATCTCCCCCCTGCTCTTCAACAAGC
TGCTGCTCAAGGACCCCGGGTAGGGAGGGCGGGAGGGAGGGAGGGAGGGA
GGGAGGGAAGGAGGGGCGATATTCCCTAGGAATGGGATGCCGTTGTCCTT
CCGTCCTTTGTCCGGCCCTCTCTCCACGGATTGTGCAAGACTAACCCCCT
TCCTCTTCTTTCCTCCTCCCTGCCCCCCGCCCTCCCTTCCTCCCTCAGAT
ACGAGAACGCCGCCTACTCTTCCTTCCTGGTGTTCGTGGGCGTGGCTATG
TCCATTACAGCCTTCCCCGTTCTTGCCCGCATTCTCACGGAGAGCAAGCT
CATCTTGTCTACGGCTGGTGAGCCCTCCCTCCCGCCATTTTTCTTTCTCT
CCTTCTCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCGTACCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCTTCCCTCCTTCCCCCTTCTCCCCTTTCCTC
ATGCCTTCTCTGTACACACCCCTCCCTCCTTCCCTCACTCACTTCCTCCC
TCTCCCCCCTCCCCCTCCTAGGCGTGATGACCATGGGCGCCGCGGCTCTG
AACGACGCCATCGCCTGGTGCCTCCTCGTCCTGGCCCTCTCTATCGTCCA
CTCGGGCCGGAACAAGCTTACGGCCCTCTTCGTCTTTCTCGCCATTGCCG
CCTACGCCATCTGTAAGGACGGAGAGAGGGAGGAAGGAAGAGAGGGAGGA
TGGATGCCACTTGTCATCATAGTGCTTCCCTCCCTCATATACAGAGCTAA
ATATACATCTTATATTTAGCGAGTCATACATGTTTACATATAGATCCAAA
CACCCATCCATCTAAACACCTACATTCCTACATCTATCGATCCATGTATA
TATCCACCGCCAATAATAGTCCTCTTCGTCGCTGTCCGCCCGGCCCTCCA
GGCCGTCGTCAGATGGGTCGAGATGACAGGTACGTCCCCTCCCTCCCTCC
CTCCCTCACTCACTCACTCACTCACTCACTCTCTCCCTCCCATGCCCACT
CTGTCTTTCCATCCCTCCCTTCTCTCCTCCTTCCCTCTCTCCCCATCCTC
CTTCTGTCTTCTCCTCCTCCACTGATCTCTTCCTCCCTCCCTCCCTCAGG
CTCCTCCTCCCTTCGCTCCCTCCTCTTCGCCCTACTCATCTGCTGTATCT
TCATCTCAGCCTGGATCACGGCATTCTTGGGGGTAGGGAAGGAGGGAGGG
AGGGGCGGAGGGAGGGACGGAGGGAGGGACGGAGGGAGGGACGGAGGGAG
GGACGGAGGGAAGAGCAAAGATGATGCGCAGGGAAGAAGTCTCCTCTTAT
TTTCCAAGAGCACTCGCGTCAGCTACCGCCGGATACCACCCCACTTTCAG
CCTCTTAGCCAGCCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTC
CTAGGTACACGCCATCTTCGGCTCCTTTTTGGTGGGGATGATCATGCCGC
GCGACGGGAAGTTCACCCTGCACATGTGCGAGAAGATCGACGATCTCGTC
AGCAACATCTTTCTCCCCCTTTATTTCGCCCTCTCAGGTCCGGACGGAAG
GAGGGAGGGCGGAGGGCGAAGCAACGCTCTGTCTGGAGTCAAGCTGGAAG
GATCGTCTACTCACCTTCCTACCCTCTCTCCGTCCCTCCCTTACTCCGTC
CCTCCCTTACTCCCTTAATCCCTCCCTCCCTCCAGGCCTTAAGACCGACA
TTGCATCCATCGGGCATGCCATCGGTGTGGCGCTGCTGGTGCTGGTGGTT
CTGATGGCTACTGCGGGGAAATTTATTGGCTGTGCCGGTAAAGAGGGAGG
AAGGGAGGGAGGGAGGGAAGGAACGCGGATGGGATGGAGAGCGGGCTTTC
TGGTGAGATTCGACCTCTGCCAATATATCCAACTCGTATCGACTTTCTCC
CCCTCCCTCCCACCCTCCCACCCTCCAGGCGCGGCCCGTCTGAACGGCAT
CCCCTGGCGGGAGTCTTGCGTGATCGGCATCCTTATGAACACGCGGTAGG
GAGTGGGGAGGGGGGGAAGGAGGGAGGGAGGGAGGAAGGGAAGGAAAGTA
GCCGTGTGTAAGAGAACTCACTCTTGTCCCCTTCTCATTCGGGTGCTTGT
GAGCCTACTTCCTTGTGAGCCTACCTCCTTCCCTCCCTCCCTTCCTCCCT
GCGGCACTCTTCTGGTGGTCGTACTCAACTGGGCCTGCAAGCCTGGATAC
CCACATGTCTCACCCCTCCCCCCCCCTCCCCCCTCCCTCCTCAGCGGCCT
CGTGGAGCTGATTGTGCTCAATCTGGGCCTGCAGGCGAAGATGCTGGACG
TGGAGATCTTCACCATTATGGTCATGATGGCCCTCATCACGGTAGCCCTT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCCTTTCATTTCCTCCC
TCCCTTCCTCCCTTCCCTGTTCCCCTTGACTGTCTCTCTTCTTCTTTCCT
CATCTCGCTTTGCCTAAACCGGCGAAACAACCGGCCGCCTGGGTCTCATC
CCTCCTCCTCTCCCTCCCTCCCTCCCTCCGCGAAGACCTTCATTACCTCC
CCCCTCGTAGAGTACATCTACCCGCCCCACATGCGCCTCCAGGCTTCCGT
CGACTCGCTGAAGGTAAGCAGAGAGAGAAGGAGGGACGGAGGGAGGGACG
GAGGAAGGGACGGAATGACCAGCACCCACTCACTGACTTTCTCTGCCCCT
GTCCCTCACGACCTCATCCTATCTATACTTCCAGGCAAGGACTCTCTTAA
CTCCCTACCTCTAACCCTCATGCCCAGGCAATGGGCACCGTGCTCACTCC
CATCCACACTCACTGA back to topCoding sequence (CDS) from alignment at chr25:632781..636746- >NO25G02020.1 ID=NO25G02020.1|Name=NO25G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr25:632781..636746- (Nannochloropsis oceanica) ATGGAGGCCGCTGCGGCAGCAGCAGCAGCAGCTACTGCAAGAGCAGGGAC AGGGCACCATGCCGGGGACCTTGTCCAGTCGGTCCATCGATTGTTGCAGA CAGCGGAGGCAAGCGCGACATCGAGTAGCTCCATATATCACCAGCCGGAG GGAGGGATTATGTCAGGGAATGGCGTGTTAGAAGATACGCTGTCGTTGTT CATGGTCCAGGCGGTCATCATTATCTGCGTGACGCGATTCCTCTCCCTGG GGACCAAGTTTCTGAAACAGCCTCGCGTGATCATGGAGGTGGTGGGCGGC ATCTTGCTAGGCCCCTCCGCCCTTGGGCATATTCCTGGCTACCTCGACAC GGTATTCCCCGCAGAGTCGCTAGGTTACCTGGCCCTCGTGGCCAACTTGG GCCTCGTCCTCTACCTTTTCCTCGTGGGCGTCGAGCTTGATCCAGAGGTC CTCCGTCGTAATGGGCAGAAGGCCATTTCCATCGCCGTGGTCGGCATCGC GCTGCCCTTCGGCTTGGGCTGCCTCATCTCCCCCCTGCTCTTCAACAAGC TGCTGCTCAAGGACCCCGGATACGAGAACGCCGCCTACTCTTCCTTCCTG GTGTTCGTGGGCGTGGCTATGTCCATTACAGCCTTCCCCGTTCTTGCCCG CATTCTCACGGAGAGCAAGCTCATCTTGTCTACGGCTGGCGTGATGACCA TGGGCGCCGCGGCTCTGAACGACGCCATCGCCTGGTGCCTCCTCGTCCTG GCCCTCTCTATCGTCCACTCGGGCCGGAACAAGCTTACGGCCCTCTTCGT CTTTCTCGCCATTGCCGCCTACGCCATCTTCCTCTTCGTCGCTGTCCGCC CGGCCCTCCAGGCCGTCGTCAGATGGGTCGAGATGACAGGCTCCTCCTCC CTTCGCTCCCTCCTCTTCGCCCTACTCATCTGCTGTATCTTCATCTCAGC CTGGATCACGGCATTCTTGGGGGTACACGCCATCTTCGGCTCCTTTTTGG TGGGGATGATCATGCCGCGCGACGGGAAGTTCACCCTGCACATGTGCGAG AAGATCGACGATCTCGTCAGCAACATCTTTCTCCCCCTTTATTTCGCCCT CTCAGGCCTTAAGACCGACATTGCATCCATCGGGCATGCCATCGGTGTGG CGCTGCTGGTGCTGGTGGTTCTGATGGCTACTGCGGGGAAATTTATTGGC TGTGCCGGCGCGGCCCGTCTGAACGGCATCCCCTGGCGGGAGTCTTGCGT GATCGGCATCCTTATGAACACGCGCGGCCTCGTGGAGCTGATTGTGCTCA ATCTGGGCCTGCAGGCGAAGATGCTGGACGTGGAGATCTTCACCATTATG GTCATGATGGCCCTCATCACGACCTTCATTACCTCCCCCCTCGTAGAGTA CATCTACCCGCCCCACATGCGCCTCCAGGCTTCCGTCGACTCGCTGAAGG CAATGGGCACCGTGCTCACTCCCATCCACACTCACTGA back to top
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