NO25G02020.1, NO25G02020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G02020.1
Unique NameNO25G02020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1488
Alignment locationchr25:632781..636746 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:632781..636746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO25G02020.1 vs.
Match: EWM23549.1 (potassium:hydrogen antiporter [Nannochloropsis gaditana])

HSP 1 Score: 389.4 bits (999), Expect = 1.600e-104
Identity = 223/453 (49.23%), Postives = 302/453 (66.67%), Query Frame = 0
Query:   38 SATSSSSIYHQPEGGIMSGNGVLEDTLSLFMVQAVIIICVTRFLSLGTKFLKQPRVIMEVVGGILLGPSALGHIPGYLDTVFPAESLGYLALVANLGLVLYLFLVGVELDPEVLRRNGQKAISIAVVGIALPFGLGCLISPLLFNKLLLKDPGYENAAYSSFLVFVGVAMSITAFPVLARILTESKLILSTAGVMTMGAAALNDAIAWCLLVLALSIVHSGRNKLTALFVFLAIAAYAIFLFVAVRPALQAVVRWVEMTGSSSLRSLLFALLICCIFISAWITAFLGVHAIFGSFLVGMIMPRDGKFTLHMCEKIDDLVSNIFLPLYFALSGLKTDIASIGHAIGVALLVLVVLMATAGKFIGCAGAARLNG-IPWRESCVIGILMNTRGLVELIVLNLGLQAKMLDVEIFTIMVMMALITTFITSPLVEYIYPPHMRLQASVDSLKAMGTVL 490
            + T+S S + +  GG+++G   L  T++LF++Q VII+  TR L+ G  +LKQPRVI E++ GILLGPS +G+IPG+L  VFP  SL +L L AN+GL+LY+FLVG+EL P  L  N ++++ I+ VGI  PF LGC  S +L+          E   +SSFL+F G+++SITAFP+LARILT+  L+ +  GVMT+GAAAL DA+AWC L+L +SI+HS    L AL+VF  + AY   L +  RP L   +      GS +L+  L AL    IF+SA++T   GVH IFGSFL+G+  P +   TL + + I+D  S +FLPLYFA SGL+T +AS+       L +LV+ +A  GKF+GCA AARL G +PWRES  +G LMNTRGLVELIVLNLGL A ++DVE FTI V+MAL+TTF T P+V  +YP   R++    S    G +L
Sbjct:    6 TTTASPSDHSEVTGGVLAGANPLHSTVALFLLQVVIIMATTRILAYGLHYLKQPRVIAEILAGILLGPSGMGNIPGWLSNVFPDRSLPFLTLAANVGLILYMFLVGLELTPGALWTNARQSVLISTVGIVFPFLLGCGGSVVLYR----HRKNTEEVPFSSFLLFTGLSLSITAFPILARILTDLNLMETEVGVMTIGAAALGDAVAWCFLILVISILHSS-TLLNALYVFCIVLAYGALLLLLGRPLLSRHLGRAARAGSETLQRSLLALTFMAIFLSAFLTDLAGVHTIFGSFLLGLAFPINPS-TLRLAKTIEDFASIVFLPLYFAASGLRTQLASLSSLRAFLLFLLVLTIAVVGKFVGCAAAARLGGKMPWRESFSVGALMNTRGLVELIVLNLGLDAGVIDVEQFTIFVLMALVTTFATCPVVSCLYPVEKRVKFGTRSAVEGGKLL 452          
The following BLAST results are available for this feature:
BLAST of NO25G02020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23549.11.600e-10449.23potassium:hydrogen antiporter [Nannochloropsis gad... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G02020NO25G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G02020.1NO25G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G02020.1.cds1NO25G02020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds2NO25G02020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds3NO25G02020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds4NO25G02020.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds5NO25G02020.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds6NO25G02020.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds7NO25G02020.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds8NO25G02020.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds9NO25G02020.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds10NO25G02020.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds11NO25G02020.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds12NO25G02020.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds13NO25G02020.1.cds13Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G02020.1.cds14NO25G02020.1.cds14Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G02020.1 ID=NO25G02020.1|Name=NO25G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp
ATGGAGGCCGCTGCGGCAGCAGCAGCAGCAGCTACTGCAAGAGCAGGGAC
AGGGCACCATGCCGGGGACCTTGTCCAGTCGGTCCATCGATTGTTGCAGA
CAGCGGAGGCAAGCGCGACATCGAGTAGCTCCATATATCACCAGCCGGAG
GGAGGGATTATGTCAGGGAATGGCGTGTTAGAAGATACGCTGTCGTTGTT
CATGGTCCAGGCGGTCATCATTATCTGCGTGACGCGATTCCTCTCCCTGG
GGACCAAGTTTCTGAAACAGCCTCGCGTGATCATGGAGGTGGTGGGCGGC
ATCTTGCTAGGCCCCTCCGCCCTTGGGCATATTCCTGGCTACCTCGACAC
GGTATTCCCCGCAGAGTCGCTAGGTTACCTGGCCCTCGTGGCCAACTTGG
GCCTCGTCCTCTACCTTTTCCTCGTGGGCGTCGAGCTTGATCCAGAGGTC
CTCCGTCGTAATGGGCAGAAGGCCATTTCCATCGCCGTGGTCGGCATCGC
GCTGCCCTTCGGCTTGGGCTGCCTCATCTCCCCCCTGCTCTTCAACAAGC
TGCTGCTCAAGGACCCCGGATACGAGAACGCCGCCTACTCTTCCTTCCTG
GTGTTCGTGGGCGTGGCTATGTCCATTACAGCCTTCCCCGTTCTTGCCCG
CATTCTCACGGAGAGCAAGCTCATCTTGTCTACGGCTGGCGTGATGACCA
TGGGCGCCGCGGCTCTGAACGACGCCATCGCCTGGTGCCTCCTCGTCCTG
GCCCTCTCTATCGTCCACTCGGGCCGGAACAAGCTTACGGCCCTCTTCGT
CTTTCTCGCCATTGCCGCCTACGCCATCTTCCTCTTCGTCGCTGTCCGCC
CGGCCCTCCAGGCCGTCGTCAGATGGGTCGAGATGACAGGCTCCTCCTCC
CTTCGCTCCCTCCTCTTCGCCCTACTCATCTGCTGTATCTTCATCTCAGC
CTGGATCACGGCATTCTTGGGGGTACACGCCATCTTCGGCTCCTTTTTGG
TGGGGATGATCATGCCGCGCGACGGGAAGTTCACCCTGCACATGTGCGAG
AAGATCGACGATCTCGTCAGCAACATCTTTCTCCCCCTTTATTTCGCCCT
CTCAGGCCTTAAGACCGACATTGCATCCATCGGGCATGCCATCGGTGTGG
CGCTGCTGGTGCTGGTGGTTCTGATGGCTACTGCGGGGAAATTTATTGGC
TGTGCCGGCGCGGCCCGTCTGAACGGCATCCCCTGGCGGGAGTCTTGCGT
GATCGGCATCCTTATGAACACGCGCGGCCTCGTGGAGCTGATTGTGCTCA
ATCTGGGCCTGCAGGCGAAGATGCTGGACGTGGAGATCTTCACCATTATG
GTCATGATGGCCCTCATCACGACCTTCATTACCTCCCCCCTCGTAGAGTA
CATCTACCCGCCCCACATGCGCCTCCAGGCTTCCGTCGACTCGCTGAAGG
CAATGGGCACCGTGCTCACTCCCATCCACACTCACTGA
back to top

protein sequence of NO25G02020.1

>NO25G02020.1-protein ID=NO25G02020.1-protein|Name=NO25G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MEAAAAAAAAATARAGTGHHAGDLVQSVHRLLQTAEASATSSSSIYHQPE
GGIMSGNGVLEDTLSLFMVQAVIIICVTRFLSLGTKFLKQPRVIMEVVGG
ILLGPSALGHIPGYLDTVFPAESLGYLALVANLGLVLYLFLVGVELDPEV
LRRNGQKAISIAVVGIALPFGLGCLISPLLFNKLLLKDPGYENAAYSSFL
VFVGVAMSITAFPVLARILTESKLILSTAGVMTMGAAALNDAIAWCLLVL
ALSIVHSGRNKLTALFVFLAIAAYAIFLFVAVRPALQAVVRWVEMTGSSS
LRSLLFALLICCIFISAWITAFLGVHAIFGSFLVGMIMPRDGKFTLHMCE
KIDDLVSNIFLPLYFALSGLKTDIASIGHAIGVALLVLVVLMATAGKFIG
CAGAARLNGIPWRESCVIGILMNTRGLVELIVLNLGLQAKMLDVEIFTIM
VMMALITTFITSPLVEYIYPPHMRLQASVDSLKAMGTVLTPIHTH*
back to top

mRNA from alignment at chr25:632781..636746-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G02020.1 ID=NO25G02020.1|Name=NO25G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=3966bp|location=Sequence derived from alignment at chr25:632781..636746- (Nannochloropsis oceanica)
ATGGAGGCCGCTGCGGCAGCAGCAGCAGCAGCTACTGCAAGAGCAGGGAC AGGGCACCATGCCGGGGACCTTGTCCAGTCGGTCCATCGATTGTTGCAGA CAGCGGAGGCAAGCGCGACATCGAGTAGCTCCATATATCACCAGCCGGAG GGAGGGATTATGTCAGGGAATGGCGTGTTAGAAGATACGCTGTCGTTGTT CATGGTCCAGGTAGGAAGAGGTGATCGAGGACGGGGGGAAGGGATGGAAG GAGGGATGGAAGGAGGGAGGGAAAGAATCAGGAAGGGAAAAGAACGATTT GGGGTGGGAGGATCGGTCTCGGTCATGATACGCCATTTATCCGCACCCTT GCTTTATTCCCTCTCATATTTCAGGCGGTCATCATTATCTGCGTGACGCG ATTCCTCTCCCTGGGGACCAAGTTTCTGAAACAGCCTCGCGTGATCATGG AGGTGGTGGGCGGCATCTTGCTAGGTAGGGAGGGAGGGAAGGGAGGGAAA GAAGAAGAGGGACGGAATGAATTGAGCACATGTCGAAGTGCCTCCATGAT GTACGTCACCGTCATGCTTATAAAAGCATCCCCTCCCTCTCTCTCTCCCA CCCAATTCCCTCCCTCCCTCAGGCCCCTCCGCCCTTGGGCATATTCCTGG CTACCTCGACACGGTATTCCCCGCAGAGTCGCTAGGTTACCTGGCCCTCG TGGCCAACTTGGGCCTCGTCCTCTACCTTTTCCTCGTGGGCGTCGAGCTT GATCCAGAGGTAGGAGGGTGGGAGGAAGGGAGGGAGAGAGGGAGGGAGGG AGGGAGGGAGGGATTTCATCCAGGAATAGATTTAGGGCACCTCTCTCTTT CGCTCTTCAACCCCCCTTTCCCCCTTCCTCCTCCTTCCTCTTTATCTTCC TCTCTCCTCCTCTCTTCCACATTTGGTGTTGAAAAGGGAGAATGGCGTGT CCGTCCGTCGGTCCGTCGCCGTGGGTGGGACCCATCACTCTCCTCCTCGG ACTTCACCCGCTCACTCATCCATCCATCCCTCCCTCCCTCCCCTCAGGTC CTCCGTCGTAATGGGCAGAAGGCCATTTCCATCGCCGTGGTCGGCATCGC GCTGCCCTTCGGCTTGGGCTGCCTCATCTCCCCCCTGCTCTTCAACAAGC TGCTGCTCAAGGACCCCGGGTAGGGAGGGCGGGAGGGAGGGAGGGAGGGA GGGAGGGAAGGAGGGGCGATATTCCCTAGGAATGGGATGCCGTTGTCCTT CCGTCCTTTGTCCGGCCCTCTCTCCACGGATTGTGCAAGACTAACCCCCT TCCTCTTCTTTCCTCCTCCCTGCCCCCCGCCCTCCCTTCCTCCCTCAGAT ACGAGAACGCCGCCTACTCTTCCTTCCTGGTGTTCGTGGGCGTGGCTATG TCCATTACAGCCTTCCCCGTTCTTGCCCGCATTCTCACGGAGAGCAAGCT CATCTTGTCTACGGCTGGTGAGCCCTCCCTCCCGCCATTTTTCTTTCTCT CCTTCTCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCGTACCCTCCCTCC CTCCCTCCCTCCCTCCCTCCTTCCCTCCTTCCCCCTTCTCCCCTTTCCTC ATGCCTTCTCTGTACACACCCCTCCCTCCTTCCCTCACTCACTTCCTCCC TCTCCCCCCTCCCCCTCCTAGGCGTGATGACCATGGGCGCCGCGGCTCTG AACGACGCCATCGCCTGGTGCCTCCTCGTCCTGGCCCTCTCTATCGTCCA CTCGGGCCGGAACAAGCTTACGGCCCTCTTCGTCTTTCTCGCCATTGCCG CCTACGCCATCTGTAAGGACGGAGAGAGGGAGGAAGGAAGAGAGGGAGGA TGGATGCCACTTGTCATCATAGTGCTTCCCTCCCTCATATACAGAGCTAA ATATACATCTTATATTTAGCGAGTCATACATGTTTACATATAGATCCAAA CACCCATCCATCTAAACACCTACATTCCTACATCTATCGATCCATGTATA TATCCACCGCCAATAATAGTCCTCTTCGTCGCTGTCCGCCCGGCCCTCCA GGCCGTCGTCAGATGGGTCGAGATGACAGGTACGTCCCCTCCCTCCCTCC CTCCCTCACTCACTCACTCACTCACTCACTCTCTCCCTCCCATGCCCACT CTGTCTTTCCATCCCTCCCTTCTCTCCTCCTTCCCTCTCTCCCCATCCTC CTTCTGTCTTCTCCTCCTCCACTGATCTCTTCCTCCCTCCCTCCCTCAGG CTCCTCCTCCCTTCGCTCCCTCCTCTTCGCCCTACTCATCTGCTGTATCT TCATCTCAGCCTGGATCACGGCATTCTTGGGGGTAGGGAAGGAGGGAGGG AGGGGCGGAGGGAGGGACGGAGGGAGGGACGGAGGGAGGGACGGAGGGAG GGACGGAGGGAAGAGCAAAGATGATGCGCAGGGAAGAAGTCTCCTCTTAT TTTCCAAGAGCACTCGCGTCAGCTACCGCCGGATACCACCCCACTTTCAG CCTCTTAGCCAGCCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTC CTAGGTACACGCCATCTTCGGCTCCTTTTTGGTGGGGATGATCATGCCGC GCGACGGGAAGTTCACCCTGCACATGTGCGAGAAGATCGACGATCTCGTC AGCAACATCTTTCTCCCCCTTTATTTCGCCCTCTCAGGTCCGGACGGAAG GAGGGAGGGCGGAGGGCGAAGCAACGCTCTGTCTGGAGTCAAGCTGGAAG GATCGTCTACTCACCTTCCTACCCTCTCTCCGTCCCTCCCTTACTCCGTC CCTCCCTTACTCCCTTAATCCCTCCCTCCCTCCAGGCCTTAAGACCGACA TTGCATCCATCGGGCATGCCATCGGTGTGGCGCTGCTGGTGCTGGTGGTT CTGATGGCTACTGCGGGGAAATTTATTGGCTGTGCCGGTAAAGAGGGAGG AAGGGAGGGAGGGAGGGAAGGAACGCGGATGGGATGGAGAGCGGGCTTTC TGGTGAGATTCGACCTCTGCCAATATATCCAACTCGTATCGACTTTCTCC CCCTCCCTCCCACCCTCCCACCCTCCAGGCGCGGCCCGTCTGAACGGCAT CCCCTGGCGGGAGTCTTGCGTGATCGGCATCCTTATGAACACGCGGTAGG GAGTGGGGAGGGGGGGAAGGAGGGAGGGAGGGAGGAAGGGAAGGAAAGTA GCCGTGTGTAAGAGAACTCACTCTTGTCCCCTTCTCATTCGGGTGCTTGT GAGCCTACTTCCTTGTGAGCCTACCTCCTTCCCTCCCTCCCTTCCTCCCT GCGGCACTCTTCTGGTGGTCGTACTCAACTGGGCCTGCAAGCCTGGATAC CCACATGTCTCACCCCTCCCCCCCCCTCCCCCCTCCCTCCTCAGCGGCCT CGTGGAGCTGATTGTGCTCAATCTGGGCCTGCAGGCGAAGATGCTGGACG TGGAGATCTTCACCATTATGGTCATGATGGCCCTCATCACGGTAGCCCTT CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCCTTTCATTTCCTCCC TCCCTTCCTCCCTTCCCTGTTCCCCTTGACTGTCTCTCTTCTTCTTTCCT CATCTCGCTTTGCCTAAACCGGCGAAACAACCGGCCGCCTGGGTCTCATC CCTCCTCCTCTCCCTCCCTCCCTCCCTCCGCGAAGACCTTCATTACCTCC CCCCTCGTAGAGTACATCTACCCGCCCCACATGCGCCTCCAGGCTTCCGT CGACTCGCTGAAGGTAAGCAGAGAGAGAAGGAGGGACGGAGGGAGGGACG GAGGAAGGGACGGAATGACCAGCACCCACTCACTGACTTTCTCTGCCCCT GTCCCTCACGACCTCATCCTATCTATACTTCCAGGCAAGGACTCTCTTAA CTCCCTACCTCTAACCCTCATGCCCAGGCAATGGGCACCGTGCTCACTCC CATCCACACTCACTGA
back to top

Coding sequence (CDS) from alignment at chr25:632781..636746-

>NO25G02020.1 ID=NO25G02020.1|Name=NO25G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr25:632781..636746- (Nannochloropsis oceanica)
ATGGAGGCCGCTGCGGCAGCAGCAGCAGCAGCTACTGCAAGAGCAGGGAC
AGGGCACCATGCCGGGGACCTTGTCCAGTCGGTCCATCGATTGTTGCAGA
CAGCGGAGGCAAGCGCGACATCGAGTAGCTCCATATATCACCAGCCGGAG
GGAGGGATTATGTCAGGGAATGGCGTGTTAGAAGATACGCTGTCGTTGTT
CATGGTCCAGGCGGTCATCATTATCTGCGTGACGCGATTCCTCTCCCTGG
GGACCAAGTTTCTGAAACAGCCTCGCGTGATCATGGAGGTGGTGGGCGGC
ATCTTGCTAGGCCCCTCCGCCCTTGGGCATATTCCTGGCTACCTCGACAC
GGTATTCCCCGCAGAGTCGCTAGGTTACCTGGCCCTCGTGGCCAACTTGG
GCCTCGTCCTCTACCTTTTCCTCGTGGGCGTCGAGCTTGATCCAGAGGTC
CTCCGTCGTAATGGGCAGAAGGCCATTTCCATCGCCGTGGTCGGCATCGC
GCTGCCCTTCGGCTTGGGCTGCCTCATCTCCCCCCTGCTCTTCAACAAGC
TGCTGCTCAAGGACCCCGGATACGAGAACGCCGCCTACTCTTCCTTCCTG
GTGTTCGTGGGCGTGGCTATGTCCATTACAGCCTTCCCCGTTCTTGCCCG
CATTCTCACGGAGAGCAAGCTCATCTTGTCTACGGCTGGCGTGATGACCA
TGGGCGCCGCGGCTCTGAACGACGCCATCGCCTGGTGCCTCCTCGTCCTG
GCCCTCTCTATCGTCCACTCGGGCCGGAACAAGCTTACGGCCCTCTTCGT
CTTTCTCGCCATTGCCGCCTACGCCATCTTCCTCTTCGTCGCTGTCCGCC
CGGCCCTCCAGGCCGTCGTCAGATGGGTCGAGATGACAGGCTCCTCCTCC
CTTCGCTCCCTCCTCTTCGCCCTACTCATCTGCTGTATCTTCATCTCAGC
CTGGATCACGGCATTCTTGGGGGTACACGCCATCTTCGGCTCCTTTTTGG
TGGGGATGATCATGCCGCGCGACGGGAAGTTCACCCTGCACATGTGCGAG
AAGATCGACGATCTCGTCAGCAACATCTTTCTCCCCCTTTATTTCGCCCT
CTCAGGCCTTAAGACCGACATTGCATCCATCGGGCATGCCATCGGTGTGG
CGCTGCTGGTGCTGGTGGTTCTGATGGCTACTGCGGGGAAATTTATTGGC
TGTGCCGGCGCGGCCCGTCTGAACGGCATCCCCTGGCGGGAGTCTTGCGT
GATCGGCATCCTTATGAACACGCGCGGCCTCGTGGAGCTGATTGTGCTCA
ATCTGGGCCTGCAGGCGAAGATGCTGGACGTGGAGATCTTCACCATTATG
GTCATGATGGCCCTCATCACGACCTTCATTACCTCCCCCCTCGTAGAGTA
CATCTACCCGCCCCACATGCGCCTCCAGGCTTCCGTCGACTCGCTGAAGG
CAATGGGCACCGTGCTCACTCCCATCCACACTCACTGA
back to top
Synonyms
Publications