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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr25 | genome | chr25:591238..595272 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G01940.3 vs.
Match: EWM21704.1 (sodium bile acid cotransporter 7, partial [Nannochloropsis gaditana]) HSP 1 Score: 292.0 bits (746), Expect = 3.700e-75 Identity = 182/285 (63.86%), Postives = 205/285 (71.93%), Query Frame = 0
Query: 19 LLLLPLLLLLLVGSHATISPTASATNSKRDTIAFLSSAPPSPCSSSTLLHRRPLFPFSRLTLATSLH--------PSSTSPQPSFLLPPSPRGGGGGTAPGVGPALRGLLSYIIRKHFLVTGMCISILLAAHNPQIGRISGPLKPEFTINTIGVSLIFLLSGLSLKVQELASAAKDFKLNAAIQTFNLGAGPLLGLAFQPLFALARVDARLATGLLIVSCLPTTVNMCIVLSGAAGANLALAVFNAVVSNFLGVFIAPATIFACVGTTSINIPYLQVIKKLVYKV 296
+LLLPLL + HAT AS D AF S PP L R+ L +T A H +S SP + LP + RGGG T + PALR L S IIRKHFLVTGM I+I+LA +NP GRI GPL PE+T+NT+GVS+IFLLSGLSL++QEL SAAKDFKLNAAIQ FNLGAGPLLGLAFQPL A VDARLATGLLIVSCLPTTVNMCIVLSGAAGA+LALAVFNAV+SNFLGVF+APATIFACVG +IN+PY+ VIKKLVYKV
Sbjct: 11 VLLLPLLFHVRHCPHATT--VASMHTPTSDASAF--SGPP-------FLPRQRLVNIRSITKARGAHVAPAYRVVSASLSPVHASHLP-NCRGGGEATGFRLRPALRRLTSSIIRKHFLVTGMVIAIVLARYNPHFGRIGGPLAPEWTVNTVGVSVIFLLSGLSLQLQELTSAAKDFKLNAAIQAFNLGAGPLLGLAFQPLLIFAGVDARLATGLLIVSCLPTTVNMCIVLSGAAGASLALAVFNAVLSNFLGVFVAPATIFACVGAQTINVPYVAVIKKLVYKV 283
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G01940.3 ID=NO25G01940.3|Name=NO25G01940.3|organism=Nannochloropsis oceanica|type=mRNA|length=2367bp CTTCACCTGATGGACCATCTCCGACGACTCTCCTTAAGGCCGTCGGCTCG ACCGCGCTGGGAAGCTTTACTTTTATCTTGCCGACGCGAGTTGGGCGAAG CAACGACGGTGAATCTGAAACTCATCTGTCCACTCAACCATTAATCCAAG GGCCGTGACTCATCACCATTGTCATCAAGCTGTGGAAATGACTCGAGCCG GCGATATGTCCGACCCAACCCGCTTGCAACACCGCCGCACCCTCCTTCTC CTTCCCCTCCTTCTCCTCCTTCTTGTGGGTTCTCATGCCACCATTTCCCC GACCGCCTCCGCCACAAACTCCAAACGTGACACCATCGCCTTCCTCTCCT CCGCCCCACCATCACCATGCTCCTCCTCCACCTTACTGCACCGCCGCCCC CTCTTCCCCTTCTCCCGCCTCACCCTCGCCACCTCTTTGCATCCCTCGTC AACCTCCCCCCAGCCCTCCTTCCTCTTGCCTCCTTCTCCTCGTGGCGGGG GCGGTGGGACGGCCCCGGGTGTAGGACCAGCGCTGCGAGGCTTGCTCTCA TATATCATCCGGAAGCATTTCTTGGTAACAGGCATGTGCATCTCCATTCT TCTGGCCGCACACAACCCACAGATAGGGCGCATTAGCGGCCCGTTGAAGC CCGAGTTCACTATCAACACCATCGGCGTCTCGCTCATCTTCCTCCTTTCC GGCCTAAGCCTTAAGGTGCAAGAGCTCGCCTCAGCTGCCAAGGACTTCAA ACTCAACGCCGCCATCCAGACGTTCAACTTGGGAGCGGGTCCACTCCTCG GCCTTGCCTTCCAACCTCTCTTTGCCCTCGCCCGAGTCGATGCCCGGCTC GCGACGGGCCTGCTCATCGTCAGCTGCCTACCCACCACCGTCAACATGTG TATTGTTCTCTCAGGGGCCGCAGGGGCAAATCTAGCTCTCGCCGTATTCA ACGCGGTGGTGTCTAATTTTCTAGGTGTCTTCATCGCGCCTGCTACCATT TTCGCATGTGTGGGCACCACGTCAATTAACATTCCCTACCTCCAGGTCAT CAAGAAGCTGGTTTATAAGGTGGTTTTTCCTGTCTTCCTCGGCATCACTC TTCGCGCCAAAATTCCTGCATTGAAGAAACGGCTCGAGCTGCCTTCTTCC AAGCTACCATTGAAGCTCTTGACTGAGGGGATCCTGGTCTCGATCATCTA CACAACCTTCTGCCAGAGCTTCCTCGAAGGCCTGGCAGTCACTGGTCGAG ATCTGATTGGCGTTGCCGTGGCCGTCCCCACCTTTCACTTACTTTCGCTA TGGCTGATGTTTCTCGTTGCTCGCGCGATGACGTCCAAGAGGGACGAGCA GGTCGGGAGGGAAGGAATGGAGAAGAGGAGGAAGGGAAGGGAGGGGAGTA GAGGGAGGAAAAGAAACGTAGATGAAAGCGTATGTTTTCATTTTGTTAAT CCGCGTTTATCGATTAAATGCTCCACTGTACCGAATACAAAACAGATCAC GGCCATGTTCGTGGGCAGCCAAAAAACCTTAGCCTTTGGAATGCCTCTCA TAAGGACCATCTTCGAGACCTCCCCCTCCATGGCCCTCTACTCGGCCCCC CTCCTCTTCATCCATCCGTCCCAGCTCTTGATTGGCTCCATGATCACGCC CTTCCTCCGCAATTACATCGAGGCAGGGAAGACGGGAGGGAGGGAGGAAG GGTGGCCATCGAAGGATAGAATCCTCTCCTCATGATCCACGCTCATCAAC ACTTGATCAGATCAATGCCCTCTCCTACCCTCCGCAAAGACATCGAGGGA GGTCGGCGGGAGGTAGCACCGTAGAAGAAGAAGTAGTACGAATGAGATGG AGTGCGTGTGTGTGTATACATATGTGCGCGTCGCAATCCCAAGAAAATGT TATTTTCTTTATAGGCAGGCTCATCTTTGTGAGCCATTTGATATGGAGGA CCACCAAGGCACGGTCGCTTCTCCTTATTTCCCTTCTGCATCATATCATC TTCCACCACTTACATAGGCGGTATCTTGGTGTAGCCGCACACAAACACCC TCGCCAAGTGCCCCGCGGGGGCAATGACGAAAAACCTTTTATAAAGAGGG ACAGAGAGGAAAGAAAGAGGCACTGATCGGTGCGGGGGCCGTGTGGGATA GGCTGTTATCAAGTCACACAAAAGTGTTTTCTGACTGCTGTTTACGTAAG GGCTGTTTGACTGACTTATGCTCTCATTTGGGTCTTTTGGCGCGAATGAT GAGGGGTCAGGAAGGAGGAATCAGATATGGGGAAACGAGATTTGGTTGAC TCGTTGTACTCATCACAAAGAACATACATTAGCCAAACACAAAAGCAGCC CGCTCCAAGTTACTGAA back to topprotein sequence of NO25G01940.3 >NO25G01940.3-protein ID=NO25G01940.3-protein|Name=NO25G01940.3|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp MTRAGDMSDPTRLQHRRTLLLLPLLLLLLVGSHATISPTASATNSKRDTI AFLSSAPPSPCSSSTLLHRRPLFPFSRLTLATSLHPSSTSPQPSFLLPPS PRGGGGGTAPGVGPALRGLLSYIIRKHFLVTGMCISILLAAHNPQIGRIS GPLKPEFTINTIGVSLIFLLSGLSLKVQELASAAKDFKLNAAIQTFNLGA GPLLGLAFQPLFALARVDARLATGLLIVSCLPTTVNMCIVLSGAAGANLA LAVFNAVVSNFLGVFIAPATIFACVGTTSINIPYLQVIKKLVYKVVFPVF LGITLRAKIPALKKRLELPSSKLPLKLLTEGILVSIIYTTFCQSFLEGLA VTGRDLIGVAVAVPTFHLLSLWLMFLVARAMTSKRDEQVGREGMEKRRKG REGSRGRKRNVDESVCFHFVNPRLSIKCSTVPNTKQITAMFVGSQKTLAF GMPLIRTIFETSPSMALYSAPLLFIHPSQLLIGSMITPFLRNYIEAGKTG GREEGWPSKDRILSS* back to topmRNA from alignment at chr25:591238..595272- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G01940.3 ID=NO25G01940.3|Name=NO25G01940.3|organism=Nannochloropsis oceanica|type=mRNA|length=4035bp|location=Sequence derived from alignment at chr25:591238..595272- (Nannochloropsis oceanica) CTTCACCTGATGGACCATCTCCGACGACTCTCCTTAAGGCCGTCGGCTCG
ACCGCGCTGGGAAGCTTTACTTTTATCTTGCCGACGCGAGTTGGGCGAAG
CAACGACGGTGAATCTGAAACTCATCTGTCCACTCAACCATTAATCCAAG
GGCCGTGACTCATCACCATTGTCATCAAGCTGTGGAAATGACTCGAGCCG
GCGATATGTCCGACCCAACCCGCTTGCAACACCGCCGCACCCTCCTTCTC
CTTCCCCTCCTTCTCCTCCTTCTTGTGGGTTCTCATGCCACCATTTCCCC
GACCGCCTCCGCCACAAACTCCAAACGTGACACCATCGCCTTCCTCTCCT
CCGCCCCACCATCACCATGCTCCTCCTCCACCTTACTGCACCGCCGCCCC
CTCTTCCCCTTCTCCCGCCTCACCCTCGCCACCTCTTTGCATCCCTCGTC
AACCTCCCCCCAGCCCTCCTTCCTCTTGCCTCCTTCTCCTCGTGGCGGGG
GCGGTGGGACGGCCCCGGGTGTAGGACCAGCGCTGCGAGGCTTGCTCTCA
TATATCATCCGGAAGCATTTCTTGGTAACAGGCATGTGCATCTCCATTCT
TCTGGCCGCACACAACCCACAGGTAAATCCAGGGGAATGAAAAAAAGGAG
GAGAAGAGGGAAAGGATATTGGGGTTCGGGAGGGCGATGAATGAAGTAAT
ATGGAAAGAAAGGGAAAGGTGGTGGGACATAGAGACGTACGTACATCGAC
ACGGAAACACATGGCATTTCCCCCTCTTCATAAATTGCTTTACAAACGCT
CGCAACCACACCCGCACACATACATGCCTATGGCTCACTCCTTGTCAATC
TGTTTACACTCAACTCACTCAGATAGGGCGCATTAGCGGCCCGTTGAAGC
CCGAGTTCACTATCAACACCATCGGCGTCTCGCTCATCTTCCTCCTTTCC
GGCCTAAGCCTTAAGGTGCGCCCCTCTCCCCCTCCCTTTCCCCTTCCCCC
CTTAATTCCTTCCACACTTGCAGCCTGCTCCCCCAACCTCTTCCCCTCCT
TTATCTCTTTCCTTCCCATGCCCCGCCCCGACGCTCTTCGCCCACGGCCC
ATAAGGCTTTTCTCCCTCGTTTCTATCTTTCCTTCCCCCCGACCCAAATC
GTTGTCAACGTCGTTCTCCTTTACCCCCTTTTTCATCACAGGTGCAAGAG
CTCGCCTCAGCTGCCAAGGACTTCAAACTCAACGCCGCCATCCAGGTTGG
AATGCGCCTGCCCTCCCTCCCTCCCTCCCTTCCTCCCTCGTTTCTCTCCT
CTCGCGACCTCTCCTCTTCCTCCCCTCCCTCTTGCCTTCCGACCACTCCT
ATAGCAGCCCACCCACCTTCCCTCCCTTCTTGCCATTCCTCCCTCCTTCC
TTCCCTCCCTCTCTCTCTCCCTCAGACGTTCAACTTGGGAGCGGGTCCAC
TCCTCGGCCTTGCCTTCCAACCTCTCTTTGCCCTCGCCCGAGTCGATGCC
CGGCTCGCGACGGGCCTGCTCATCGTCAGCTGCCTAGTGAGGAAGGAGGG
AGGGAGGGTGGGAAGGGAGGGAAAAAGGATATAATACATAAGCTTTGGTT
GGGAATGAAACGCCGGTTTTATAAGCGCGCATCCCTGACATCCCTTTTCC
CTCCCTCCCTCGCTCCCCTTCCTCCCTCCCTTTCTCCCTCGCTCCCTCCC
TCCAGCCCACCACCGTCAACATGTGTATTGTTCTCTCAGGGGCCGCAGGG
GCAAATCTAGCTCTCGCCGTATTCAACGCGGTGGTGTCTAATTTTCTAGG
TCTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGATGATGCGAATGTCGT
CTTATAGGGCGCCGCCATACGGTCCTTGTGGAATGAGGCGCCGTAGGCAT
GGAGGGAGGGAGGGAGGAAGGGAAGGAGGAATGGACAAGCGTTGTCAAAT
GATCCCTCTCGCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCTTTCAGGTGTCTTCATCGCGCCTGCTACCATTTTCGCATGTGT
GGGCACCACGTCAATTAACATTCCCTACCTCCAGGTCATCAAGAAGCTGG
TTTATAAGGTGGGGAGGGAAGAAGAAAAGGAGGGAGGGAGGGAGGGAGGG
AGAGAGGGAGGGAGCACCACGCAGAAGACAAAGCACCAATTTATGCTTAT
GTTCAACCCTCCCTTCCTCCCTCCCTCCCTTCCTCCCTTCCTCCCTTCCT
CCCTGTCTCCCTTCCCAGGTGGTTTTTCCTGTCTTCCTCGGCATCACTCT
TCGCGCCAAAATTCCTGCATTGAAGAAACGGCTCGAGCTGCCTTCTTCCA
AGCTACCATTGAAGTAAGCAGGAGGGAGGGAGGGAGAGTGGGAGGGAGGG
ATGGGGGGAGGGTCGCGTCCCCCACTCGCACTGAGTTTGTTGATTCTTGC
GACACGTACTTGACTGAGTGACGTACTCACTCACTCGCTACCTCGCGCTG
TGTTTGTCGATCTTCCCCACAGGCTCTTGACTGAGGGGATCCTGGTCTCG
ATCATCTACACAACCTTCTGCCAGAGCTTCCTCGAAGGTACGTCTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCCTCTCCTTTTCGGGGACCCAGCTGGTA
GAATGAAATCGGTTTGCTCGTTTTTACCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCTCCCCTCTCTTCAGGCCTGGCAGTCACTGGTCGAGATCTGATT
GGCGTTGCCGTGGCCGTCCCCACCTTTCACTTACTTTCGCTATGGCTGAT
GTTTCTCGTTGCTCGCGCGATGACGTCCAAGAGGGACGAGCAGGTCGGGA
GGGAAGGAATGGAGAAGAGGAGGAAGGGAAGGGAGGGGAGTAGAGGGAGG
AAAAGAAACGTAGATGAAAGCGTATGTTTTCATTTTGTTAATCCGCGTTT
ATCGATTAAATGCTCCACTGTACCGAATACAAAACAGATCACGGCCATGT
TCGTGGGCAGCCAAAAAACCTTAGCCTTTGGAATGCCTCTCATAAGGGTG
CGTACACCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCTACTCTTTCC
TCACCAGAGCTATCCTACATGTCAACAAGCTCTAAAACGCCTTTTTCATG
GCCCTGGGCAGCTTCTTATGTCCTCACTCTCTCCCTCCCTTCCTTCCTCC
CTCCCTCCCTCCCTCCGATTCAGACCATCTTCGAGACCTCCCCCTCCATG
GCCCTCTACTCGGCCCCCCTCCTCTTCATCCATCCGTCCCAGCTCTTGAT
TGGCTCCATGATCACGCCCTTCCTCCGCAATTACATCGAGGCAGGGAAGA
CGGGAGGGAGGGAGGAAGGGTGGCCATCGAAGGATAGAATCCTCTCCTCA
TGATCCACGCTCATCAACACTTGATCAGATCAATGCCCTCTCCTACCCTC
CGCAAAGACATCGAGGGAGGTCGGCGGGAGGTAGCACCGTAGAAGAAGAA
GTAGTACGAATGAGATGGAGTGCGTGTGTGTGTATACATATGTGCGCGTC
GCAATCCCAAGAAAATGTTATTTTCTTTATAGGCAGGCTCATCTTTGTGA
GCCATTTGATATGGAGGACCACCAAGGCACGGTCGCTTCTCCTTATTTCC
CTTCTGCATCATATCATCTTCCACCACTTACATAGGCGGTATCTTGGTGT
AGCCGCACACAAACACCCTCGCCAAGTGCCCCGCGGGGGCAATGACGAAA
AACCTTTTATAAAGAGGGACAGAGAGGAAAGAAAGAGGCACTGATCGGTG
CGGGGGCCGTGTGGGATAGGCTGTTATCAAGTCACACAAAAGTGTTTTCT
GACTGCTGTTTACGTAAGGGCTGTTTGACTGACTTATGCTCTCATTTGGG
TCTTTTGGCGCGAATGATGAGGGGTCAGGAAGGAGGAATCAGATATGGGG
AAACGAGATTTGGTTGACTCGTTGTACTCATCACAAAGAACATACATTAG
CCAAACACAAAAGCAGCCCGCTCCAAGTTACTGAA back to topCoding sequence (CDS) from alignment at chr25:591238..595272- >NO25G01940.3 ID=NO25G01940.3|Name=NO25G01940.3|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at chr25:591238..595272- (Nannochloropsis oceanica) ATGACTCGAGCCGGCGATATGTCCGACCCAACCCGCTTGCAACACCGCCG CACCCTCCTTCTCCTTCCCCTCCTTCTCCTCCTTCTTGTGGGTTCTCATG CCACCATTTCCCCGACCGCCTCCGCCACAAACTCCAAACGTGACACCATC GCCTTCCTCTCCTCCGCCCCACCATCACCATGCTCCTCCTCCACCTTACT GCACCGCCGCCCCCTCTTCCCCTTCTCCCGCCTCACCCTCGCCACCTCTT TGCATCCCTCGTCAACCTCCCCCCAGCCCTCCTTCCTCTTGCCTCCTTCT CCTCGTGGCGGGGGCGGTGGGACGGCCCCGGGTGTAGGACCAGCGCTGCG AGGCTTGCTCTCATATATCATCCGGAAGCATTTCTTGGTAACAGGCATGT GCATCTCCATTCTTCTGGCCGCACACAACCCACAGATAGGGCGCATTAGC GGCCCGTTGAAGCCCGAGTTCACTATCAACACCATCGGCGTCTCGCTCAT CTTCCTCCTTTCCGGCCTAAGCCTTAAGGTGCAAGAGCTCGCCTCAGCTG CCAAGGACTTCAAACTCAACGCCGCCATCCAGACGTTCAACTTGGGAGCG GGTCCACTCCTCGGCCTTGCCTTCCAACCTCTCTTTGCCCTCGCCCGAGT CGATGCCCGGCTCGCGACGGGCCTGCTCATCGTCAGCTGCCTACCCACCA CCGTCAACATGTGTATTGTTCTCTCAGGGGCCGCAGGGGCAAATCTAGCT CTCGCCGTATTCAACGCGGTGGTGTCTAATTTTCTAGGTGTCTTCATCGC GCCTGCTACCATTTTCGCATGTGTGGGCACCACGTCAATTAACATTCCCT ACCTCCAGGTCATCAAGAAGCTGGTTTATAAGGTGGTTTTTCCTGTCTTC CTCGGCATCACTCTTCGCGCCAAAATTCCTGCATTGAAGAAACGGCTCGA GCTGCCTTCTTCCAAGCTACCATTGAAGCTCTTGACTGAGGGGATCCTGG TCTCGATCATCTACACAACCTTCTGCCAGAGCTTCCTCGAAGGCCTGGCA GTCACTGGTCGAGATCTGATTGGCGTTGCCGTGGCCGTCCCCACCTTTCA CTTACTTTCGCTATGGCTGATGTTTCTCGTTGCTCGCGCGATGACGTCCA AGAGGGACGAGCAGGTCGGGAGGGAAGGAATGGAGAAGAGGAGGAAGGGA AGGGAGGGGAGTAGAGGGAGGAAAAGAAACGTAGATGAAAGCGTATGTTT TCATTTTGTTAATCCGCGTTTATCGATTAAATGCTCCACTGTACCGAATA CAAAACAGATCACGGCCATGTTCGTGGGCAGCCAAAAAACCTTAGCCTTT GGAATGCCTCTCATAAGGACCATCTTCGAGACCTCCCCCTCCATGGCCCT CTACTCGGCCCCCCTCCTCTTCATCCATCCGTCCCAGCTCTTGATTGGCT CCATGATCACGCCCTTCCTCCGCAATTACATCGAGGCAGGGAAGACGGGA GGGAGGGAGGAAGGGTGGCCATCGAAGGATAGAATCCTCTCCTCATGA back to top
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