NO25G01630.1, NO25G01630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01630.1
Unique NameNO25G01630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length906
Alignment locationchr25:457303..458873 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:457303..458873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01630.1 vs.
Match: CEM05181.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 301.2 bits (770), Expect = 3.600e-78
Identity = 172/321 (53.58%), Postives = 218/321 (67.91%), Query Frame = 0 
Query:    1 MRVGDILLAVDDVPVTGRSVDQVRDLLRGPPNTQVKVKFSRAGLPPPSQQELLLTRRLIRVPDVKLTSFLGTPKEGIGYVQLGGFSQNAPTELRIAIESIRLNAPE-GLKGLILDLRGNPGGLLTSAVDVASLLVPPGSEIVSVKGRAFPEVSYSSSLAPIRDPSRVPLAVLVNSNTASAAEIVSGAVQDLDSGVIVGEDRTYGKGLVQNVEPLPFKTALKYTVAKYYTPSGRCIQSVRYSQ----------SSPPGEAAGEGGKEDEV-----TKDTKPKRRAASLLKGFEAR----SVPESEYQTFYTKGGRVVRDGGG 302
            MRVGD L+ V+  PV   S ++V+++LRGPP++QV V F R G+     Q + LTRRL+RVP+VKL  +LG+  +GIGY+QL GFS ++  E+R+A+  ++ NAP  GL G++LDLRGNPGGLL SAVD+ASL VP GSEIVS +GR+F  V+Y S+  P+ DPS V L +L N  TASAAEIVSGA+QDLD GVIVG  RT+GKGLVQNVE LPF TALKYTVAKYYTPSGRCIQSV+YS+          ++P  +  G      E      T D + +R         + R     + ESE + F T+GGR VRDGGG
Sbjct:  396 MRVGDHLVEVEGRPVANLSPEEVKNMLRGPPDSQVNVAFIRDGVD--GLQSVTLTRRLVRVPNVKLFQYLGSRDDGIGYIQLSGFSASSFAEMRVALRWLQQNAPRAGLDGVVLDLRGNPGGLLNSAVDIASLFVPKGSEIVSAQGRSFVRVAYKSTTEPVLDPS-VKLVLLTNEATASAAEIVSGAIQDLDCGVIVGTGRTFGKGLVQNVEALPFDTALKYTVAKYYTPSGRCIQSVKYSEGGVNMADASTTTPNEDTQGTPTAPQETINGPSTTDPQSRRNGRRKTDDSDLRYLSDEISESERKVFKTRGGRYVRDGGG 713
The following BLAST results are available for this feature:
BLAST of NO25G01630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEM05181.13.600e-7853.58unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01630NO25G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01630.1NO25G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01630.1.cds1NO25G01630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01630.1.cds2NO25G01630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01630.1.cds3NO25G01630.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01630.1.cds4NO25G01630.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01630.1 ID=NO25G01630.1|Name=NO25G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=906bp
ATGCGGGTGGGTGATATCCTCCTGGCAGTGGATGACGTTCCGGTGACAGG
ACGGTCGGTGGATCAAGTCCGAGACCTCCTGCGTGGGCCCCCCAACACCC
AGGTCAAGGTGAAATTTAGCCGTGCCGGCCTTCCTCCTCCGTCGCAGCAG
GAGCTGCTCCTGACCCGCCGTTTAATCCGGGTACCTGACGTTAAGCTCAC
CTCCTTCCTCGGCACTCCCAAGGAAGGCATAGGCTACGTCCAGCTGGGCG
GGTTCTCTCAGAATGCCCCCACCGAGCTTCGGATTGCCATTGAATCGATC
CGGTTGAATGCTCCCGAGGGATTGAAGGGTCTGATTTTGGATTTGAGGGG
TAATCCTGGGGGATTACTTACCTCGGCGGTGGACGTGGCCTCCCTGTTGG
TGCCTCCCGGGAGTGAAATTGTGTCGGTGAAAGGACGGGCGTTTCCGGAG
GTGTCGTATTCGTCCAGCCTTGCTCCCATCCGCGATCCTTCCAGGGTCCC
ACTGGCGGTTCTGGTGAACAGTAACACCGCTTCCGCCGCCGAGATAGTCT
CAGGCGCCGTCCAAGATTTGGACAGTGGGGTCATCGTGGGTGAAGACAGG
ACGTATGGGAAGGGTTTGGTCCAGAACGTGGAGCCTCTCCCCTTCAAAAC
AGCCCTCAAGTACACCGTGGCCAAGTACTACACACCTTCCGGTCGTTGCA
TCCAGAGCGTGCGCTATTCCCAGTCCTCTCCCCCGGGGGAGGCAGCGGGG
GAAGGCGGGAAGGAGGACGAAGTGACGAAAGACACCAAGCCGAAACGCCG
GGCCGCCTCGTTGCTGAAAGGATTCGAAGCCCGCAGCGTACCCGAGAGTG
AGTACCAAACGTTCTACACCAAGGGAGGGAGGGTGGTGAGGGATGGGGGG
GGATAG
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protein sequence of NO25G01630.1

>NO25G01630.1-protein ID=NO25G01630.1-protein|Name=NO25G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MRVGDILLAVDDVPVTGRSVDQVRDLLRGPPNTQVKVKFSRAGLPPPSQQ
ELLLTRRLIRVPDVKLTSFLGTPKEGIGYVQLGGFSQNAPTELRIAIESI
RLNAPEGLKGLILDLRGNPGGLLTSAVDVASLLVPPGSEIVSVKGRAFPE
VSYSSSLAPIRDPSRVPLAVLVNSNTASAAEIVSGAVQDLDSGVIVGEDR
TYGKGLVQNVEPLPFKTALKYTVAKYYTPSGRCIQSVRYSQSSPPGEAAG
EGGKEDEVTKDTKPKRRAASLLKGFEARSVPESEYQTFYTKGGRVVRDGG
G*
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mRNA from alignment at chr25:457303..458873+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01630.1 ID=NO25G01630.1|Name=NO25G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1571bp|location=Sequence derived from alignment at chr25:457303..458873+ (Nannochloropsis oceanica)
ATGCGGGTGGGTGATATCCTCCTGGCAGTGGATGACGTTCCGGTGACAGG
ACGGTCGGTGGATCAAGTCCGAGACCTCCTGCGTGGGCCCCCCAACACCC
AGGTCAAGGTGAGGCAACCCCATCCATTGATCCAGTAGTAAATCAATCTA
TTTACCCATCAATCCCATCCATTGATCCAGTAGTTAATCAATCTTTATTC
CAATCAAGCCAAGCTATCACTCACTCACTCCATGCATCAACTAGCAGCCG
ACTGCCTCTCTTCTCCACGCCATCGGCTTGTCCTTTGTATCCCTCCCTCT
CACAAACACCCCTCCCTCCCCCCCTCCCCTCCTTGCCATCAGGTGAAATT
TAGCCGTGCCGGCCTTCCTCCTCCGTCGCAGCAGGAGCTGCTCCTGACCC
GCCGTTTAATCCGGGTACCTGACGTTAAGCTCACCTCCTTCCTCGGCACT
CCCAAGGAAGGCATAGGCTACGTCCAGCTGGGCGGGTTCTCTCAGAATGC
CCCCACCGAGCTTCGGATTGCCATTGAATCGATCCGGTTGAATGCTCCCG
AGGGATTGAAGGGTCTGATTTTGGATTTGAGGGGTAATCCTGGGGGATTA
CTTACCTCGGCGGTGGACGTGGCCTCCCTGTTGGTGCCTCCCGGGAGTGA
AATTGTGTCGGTGAAAGGACGGGCGTTTCCGGAGGTGTCGTATTCGTCCA
GCCTTGGTGAGGAGGAAGGAGGGAGGGAAGGAGGGAGGGGAGGAGGGAGG
GAAGGAGGGAGGGGGCGAAGGGAGGGCAGGAGGGATTGTCCTTGTGAGTG
ATGCTTCAGATTGTTCCGACGGCCACGAAAACCATGCATCTAAGCCTTCT
TTCCCTCCCTCCCCCCATCCCTTTCCTTAGCTCCCATCCGCGATCCTTCC
AGGGTCCCACTGGCGGTTCTGGTGAACAGTAACACCGCTTCCGCCGCCGA
GATAGTCTCAGGCGCCGTCCAAGATTTGGACAGTGGGGTCATCGTGGGTG
AAGACAGGACGTATGGGAAGGGTTTGGTCCAGAACGTGGAGCCTCTCCCC
TTCAAAACAGCCCTCAAGTACACCGTGGCCAAGTACTACACACCTTCCGG
TACGTGCCCGCCCTCCCTCCCGCCCTCCCTCCCTCCCTCCCTCCCTTCCT
CCTGGTAGCTGGCTGCATTGAAAGCGGGGCTCCTCCCCCACCCACCCATT
CTCTCTCTCTCTCCCTCCCTCTCTCCCTCCCTTTCTCCCTCCCTTCCTTC
CTCAGGCCAGTGCTCCCAACGCATGCGCCACATCCCTCCTTCATCTCCCC
ACGCACTCAGTCACCCTCCCCCCCTTCCTTCCTCCTTCGTTCCTTTCCTC
CCTCAGGTCGTTGCATCCAGAGCGTGCGCTATTCCCAGTCCTCTCCCCCG
GGGGAGGCAGCGGGGGAAGGCGGGAAGGAGGACGAAGTGACGAAAGACAC
CAAGCCGAAACGCCGGGCCGCCTCGTTGCTGAAAGGATTCGAAGCCCGCA
GCGTACCCGAGAGTGAGTACCAAACGTTCTACACCAAGGGAGGGAGGGTG
GTGAGGGATGGGGGGGGATAG
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Coding sequence (CDS) from alignment at chr25:457303..458873+

>NO25G01630.1 ID=NO25G01630.1|Name=NO25G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr25:457303..458873+ (Nannochloropsis oceanica)
ATGCGGGTGGGTGATATCCTCCTGGCAGTGGATGACGTTCCGGTGACAGG
ACGGTCGGTGGATCAAGTCCGAGACCTCCTGCGTGGGCCCCCCAACACCC
AGGTCAAGGTGAAATTTAGCCGTGCCGGCCTTCCTCCTCCGTCGCAGCAG
GAGCTGCTCCTGACCCGCCGTTTAATCCGGGTACCTGACGTTAAGCTCAC
CTCCTTCCTCGGCACTCCCAAGGAAGGCATAGGCTACGTCCAGCTGGGCG
GGTTCTCTCAGAATGCCCCCACCGAGCTTCGGATTGCCATTGAATCGATC
CGGTTGAATGCTCCCGAGGGATTGAAGGGTCTGATTTTGGATTTGAGGGG
TAATCCTGGGGGATTACTTACCTCGGCGGTGGACGTGGCCTCCCTGTTGG
TGCCTCCCGGGAGTGAAATTGTGTCGGTGAAAGGACGGGCGTTTCCGGAG
GTGTCGTATTCGTCCAGCCTTGCTCCCATCCGCGATCCTTCCAGGGTCCC
ACTGGCGGTTCTGGTGAACAGTAACACCGCTTCCGCCGCCGAGATAGTCT
CAGGCGCCGTCCAAGATTTGGACAGTGGGGTCATCGTGGGTGAAGACAGG
ACGTATGGGAAGGGTTTGGTCCAGAACGTGGAGCCTCTCCCCTTCAAAAC
AGCCCTCAAGTACACCGTGGCCAAGTACTACACACCTTCCGGTCGTTGCA
TCCAGAGCGTGCGCTATTCCCAGTCCTCTCCCCCGGGGGAGGCAGCGGGG
GAAGGCGGGAAGGAGGACGAAGTGACGAAAGACACCAAGCCGAAACGCCG
GGCCGCCTCGTTGCTGAAAGGATTCGAAGCCCGCAGCGTACCCGAGAGTG
AGTACCAAACGTTCTACACCAAGGGAGGGAGGGTGGTGAGGGATGGGGGG
GGATAG
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Synonyms
Publications