NO25G01550.1, NO25G01550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01550.1
Unique NameNO25G01550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1815
Alignment locationchr25:440553..442704 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:440553..442704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01550.1 vs.
Match: XP_008862045.1 (hypothetical protein, variant [Aphanomyces invadans]; ETW08240.1 hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 151.4 bits (381), Expect = 7.900e-33
Identity = 96/275 (34.91%), Postives = 149/275 (54.18%), Query Frame = 0 
Query:   95 MPSGMGFLLCKGWHPGTQQNMRKVWIAEQETAAREQREKEAAEALGKELEAQHFAEMAKSKMCSMTMLATDIEKNKTAKGSIAFLYAKPPGMLLQGQDGVGGEEGGQGGLEDGADEAARAFFKQNEEAAKARKVREHKESAAFSMHGKLSALEQMTGTRRRKELTMDEQAERFPILRNAPVEGAYAQNVKLTFNPVGFTIRNCQCLKCGAYGHTSGDRECPLWGEITSLNAARLRREDPLTYMEKDEEEGGPEGGKEGGKKEKVVLRLAALPREM 370
            M  G+ FL  KGWHP  +QN +K+WIAEQ+  A+E+ EK+AA  + K+ E   F ++A +K  +      D E+   ++  ++FLY  PPG+       V  + G  G LE+             ++A KA +++  K +A          LE++TG R    +T+ +Q ERFP+L++APVEG Y QN+K+ F PVG  +RN +C +C  +GH SGDREC +  +  + +A R   EDP++Y+ +              +K  + L+  ALP EM
Sbjct:    1 MGGGLKFLNLKGWHPSNKQNQKKIWIAEQKHKAKEESEKDAAREVHKDNELLRFQQIAATKGDA------DAERRIHSQ-KVSFLYQPPPGL-----KKVDDKHGDDGELEN------------EDDAVKAFRLKMEKRNAGRDHQSYQRPLEKLTGRRANDPVTIKDQVERFPMLKDAPVEGEYTQNIKVNFQPVGMKLRNVRCARCQVWGHQSGDRECEMRDQNPN-DAFRQNIEDPMSYINQI-------------RKGDLSLKQTALPLEM 237
The following BLAST results are available for this feature:
BLAST of NO25G01550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008862045.17.900e-3334.91hypothetical protein, variant [Aphanomyces invadan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01550NO25G01550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01550.1NO25G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01550.1.cds1NO25G01550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01550.1.cds2NO25G01550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01550.1.cds3NO25G01550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01550.1.cds4NO25G01550.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01550.1 ID=NO25G01550.1|Name=NO25G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp
GGGAGGTTGTCCCTTTTAAATTAGCTACCATCGCCCCCTAGATTGATAAT
AGTTGACATATGATACGCTGTAACCTTTTTTGAACGGCTTTTGTTATCGG
AGTGTGCAGGAATGACGAAGAGAAAGCAATGAGGAAGGAGTCGGAGCGTA
AGCAGCAGAGGGGACTCGGAGAAAAAAGTATTCAACGGCTTACCTCCATC
TTACCCTCTCCTTTGCCTCGAGGATAACCACGACACGACCACAAAAGCAC
CCATGAATCACAGCTTACACGCCGAAAGCCGCACTGTTCCGCTGTGGATT
TGGCGGCTGCCACATCATGGCACACCATCTGCACCATCATTAGCATCATC
ATCATCCCCTGTATCCCCGGACACCTGCGCTCACATACGCCTGTACACCA
CACAGGAAGCCAGCAGAGCCCGCAAATCAGCACAGCTAGCTTGTGGTCTC
CGTCATCGCTTTATAACCCGCTGCATCTACGCCTCGACCCTCCCGCCTAC
ACCACCACCGTCCTCCCCCACCTATCAGTTAATCATGCCGTCTGGAATGG
GCTTCTTGCTCTGCAAGGGCTGGCATCCAGGCACCCAACAAAACATGCGG
AAAGTGTGGATCGCCGAGCAAGAAACCGCCGCGCGGGAACAACGGGAGAA
AGAAGCCGCGGAAGCCTTGGGAAAAGAGTTGGAAGCGCAGCATTTTGCCG
AGATGGCTAAGTCGAAAATGTGTAGCATGACGATGCTTGCCACGGACATC
GAGAAGAACAAGACTGCCAAAGGATCGATTGCCTTCCTCTATGCCAAGCC
GCCGGGCATGCTTTTGCAGGGCCAGGATGGGGTGGGTGGGGAGGAAGGGG
GGCAGGGAGGTTTGGAGGACGGGGCTGATGAGGCGGCACGGGCTTTTTTT
AAGCAGAATGAAGAGGCGGCCAAGGCGAGGAAAGTAAGAGAGCATAAGGA
GAGTGCTGCGTTTAGCATGCATGGGAAGTTAAGCGCACTGGAGCAGATGA
CGGGGACACGTCGAAGGAAAGAGCTCACCATGGACGAGCAAGCCGAGCGT
TTCCCCATCCTCCGAAACGCCCCCGTTGAGGGCGCCTATGCGCAAAACGT
TAAATTGACTTTCAATCCCGTGGGCTTCACCATCCGCAACTGCCAGTGTC
TTAAATGTGGAGCGTACGGGCATACCAGTGGCGATAGGGAGTGTCCGCTC
TGGGGGGAGATAACGAGCTTGAACGCGGCGAGGTTGAGGAGGGAGGATCC
CCTGACATACATGGAAAAGGACGAGGAGGAGGGCGGGCCGGAGGGAGGGA
AGGAGGGAGGAAAGAAAGAGAAGGTGGTATTACGCTTGGCGGCATTGCCA
CGGGAGATGGCGTTTGCGAGGGGGGAGGGGGGGGAGGTAGAGGAAGAGGA
GGAGGAGGGGGAGGAGAAGGGAACCAGGAGCACAAAGGAGAAGAAGCTGT
TGTTGAAGCGTTTGCGGCAGGGGGTGGTTAGGGAGGGAGGAAGTGTGGTG
GATAAGGAGGAGGAGAGGGAGGAAGAGGAGGAAGAGGATAGACGGAAGCG
AAAGCGGAGGAGAAAGGAGAAGAGGAAGGAGAAAAAGAGGAGGAAGAAGC
AGAAGGAGAAGAAGCAGATGGGGGGTAGTAGTAAGCGAAAAAGTAGCAGT
CGCAGGAGGAACAGCAGCCGCAGCAGCTCTAGCAGCAGCAGCACTAGCAG
CAGCACTAGCAGCAGCAGCACCCATAAAAAAAAGTGGAAAAGTGCTCGTT
GTCTCCCACGAACTCATTGTCGGAAGGAGAGGGAAGGAGGTAGGGAGGGA
GGGAGAAGCGATTGA
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protein sequence of NO25G01550.1

>NO25G01550.1-protein ID=NO25G01550.1-protein|Name=NO25G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MNHSLHAESRTVPLWIWRLPHHGTPSAPSLASSSSPVSPDTCAHIRLYTT
QEASRARKSAQLACGLRHRFITRCIYASTLPPTPPPSSPTYQLIMPSGMG
FLLCKGWHPGTQQNMRKVWIAEQETAAREQREKEAAEALGKELEAQHFAE
MAKSKMCSMTMLATDIEKNKTAKGSIAFLYAKPPGMLLQGQDGVGGEEGG
QGGLEDGADEAARAFFKQNEEAAKARKVREHKESAAFSMHGKLSALEQMT
GTRRRKELTMDEQAERFPILRNAPVEGAYAQNVKLTFNPVGFTIRNCQCL
KCGAYGHTSGDRECPLWGEITSLNAARLRREDPLTYMEKDEEEGGPEGGK
EGGKKEKVVLRLAALPREMAFARGEGGEVEEEEEEGEEKGTRSTKEKKLL
LKRLRQGVVREGGSVVDKEEEREEEEEEDRRKRKRRRKEKRKEKKRRKKQ
KEKKQMGGSSKRKSSSRRRNSSRSSSSSSSTSSSTSSSSTHKKKWKSARC
LPRTHCRKEREGGREGGRSD*
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mRNA from alignment at chr25:440553..442704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01550.1 ID=NO25G01550.1|Name=NO25G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2152bp|location=Sequence derived from alignment at chr25:440553..442704+ (Nannochloropsis oceanica)
GGGAGGTTGTCCCTTTTAAATTAGCTACCATCGCCCCCTAGATTGATAAT
AGTTGACATATGATACGCTGTAACCTTTTTTGAACGGCTTTTGTTATCGG
AGTGTGCAGGAATGACGAAGAGAAAGCAATGAGGAAGGAGTCGGAGCGTA
AGCAGCAGAGGGGACTCGGAGAAAAAAGTATTCAACGGCTTACCTCCATC
TTACCCTCTCCTTTGCCTCGAGGATAACCACGACACGACCACAAAAGCAC
CCATGAATCACAGCTTACACGCCGAAAGCCGCACTGTTCCGCTGTGGATT
TGGCGGCTGCCACATCATGGCACACCATCTGCACCATCATTAGCATCATC
ATCATCCCCTGTATCCCCGGACACCTGCGCTCACATACGCCTGTACACCA
CACAGGAAGCCAGCAGAGCCCGCAAATCAGCACAGCTAGCTTGTGGTCTC
CGTCATCGCTTTATAACCCGCTGCATCTACGCCTCGACCCTCCCGCCTAC
ACCACCACCGTCCTCCCCCACCTATCAGTTAATCATGCCGTCTGGAATGG
GCTTCTTGCTCTGCAAGGTACTTATGCGGCTTCGTCTCCTGTCGCGCATT
TGTGGTACCCGCATGAATGGCGCTATCTCCCCGTTCACTTTCATCCATCC
TGTGACCGATCTGACTCTCCTTCCCCCCCAAACTCTTTCCCATCCCATCC
CTCTTCCTTCCTAGGGCTGGCATCCAGGCACCCAACAAAACATGCGGAAA
GTGTGGATCGCCGAGCAAGAAACCGCCGCGCGGGAACAACGGGAGAAAGA
AGCCGCGGAAGCCTTGGGAAAAGAGTTGGAAGCGCAGCATTTTGCCGAGA
TGGCTAAGTCGAAAATGTGTAGCATGACGATGCTTGCCACGGACATCGAG
AAGAACAAGACTGCCAAAGGATCGATTGCCTTCCTCTATGCCAAGCCGCC
GGGCATGCTTTTGCAGGGCCAGGATGGGGTGGGTGGGGAGGAAGGGGGGC
AGGGAGGTTTGGAGGACGGGGCTGATGAGGCGGCACGGGCTTTTTTTAAG
CAGAATGAAGAGGCGGCCAAGGCGAGGAAAGTAAGAGAGCATAAGGAGAG
TGCTGCGTTTAGCATGCATGGGAAGTTAAGCGCACTGGAGCAGATGACGG
GGACACGTCGAAGGAAAGAGGTATGTTCAGGCCTTCCTTCCCTTCCTCCC
TCCCTCACCTAGCTCACAATATTTCTGCGTAAATCCTCCCTCCCTCCCTC
CTGCAGCTCACCATGGACGAGCAAGCCGAGCGTTTCCCCATCCTCCGAAA
CGCCCCCGTTGAGGGCGCCTATGCGCAAAACGTTAAATTGACTTTCAATC
CCGTGGGCTTCACCATCCGCAACTGCCAGTGTCTTAAATGTGGAGCGTAC
GGGCATACCAGTGGCGATAGGGAGTGTCCGCTCTGGGGGGAGATAACGAG
CTTGAACGCGGCGAGGTTGAGGAGGGAGGATCCCCTGACATACATGGAAA
AGGACGAGGAGGAGGGCGGGCCGGAGGGAGGGAAGGAGGGAGGAAAGAAA
GAGAAGGTGGTATTACGCTTGGCGGCATTGCCACGGGAGATGGCGTTTGC
GAGGGGGGAGGGGGGGGAGGTAGAGGAAGAGGAGGAGGAGGGGGAGGAGA
AGGGAACCAGGAGGTGGTGTTGGAGGAAGAGGGGGAAGGAGGGTGGGACA
GAGGAGGGCGGGGAGGAAGGGGAGGAGGCTTTGATGAGATGGACGAGGAG
TATTTAGCAAAACTTAGCACAAAGGAGAAGAAGCTGTTGTTGAAGCGTTT
GCGGCAGGGGGTGGTTAGGGAGGGAGGAAGTGTGGTGGATAAGGAGGAGG
AGAGGGAGGAAGAGGAGGAAGAGGATAGACGGAAGCGAAAGCGGAGGAGA
AAGGAGAAGAGGAAGGAGAAAAAGAGGAGGAAGAAGCAGAAGGAGAAGAA
GCAGATGGGGGGTAGTAGTAAGCGAAAAAGTAGCAGTCGCAGGAGGAACA
GCAGCCGCAGCAGCTCTAGCAGCAGCAGCACTAGCAGCAGCACTAGCAGC
AGCAGCACCCATAAAAAAAAGTGGAAAAGTGCTCGTTGTCTCCCACGAAC
TCATTGTCGGAAGGAGAGGGAAGGAGGTAGGGAGGGAGGGAGAAGCGATT
GA
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Coding sequence (CDS) from alignment at chr25:440553..442704+

>NO25G01550.1 ID=NO25G01550.1|Name=NO25G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr25:440553..442704+ (Nannochloropsis oceanica)
ATGAATCACAGCTTACACGCCGAAAGCCGCACTGTTCCGCTGTGGATTTG
GCGGCTGCCACATCATGGCACACCATCTGCACCATCATTAGCATCATCAT
CATCCCCTGTATCCCCGGACACCTGCGCTCACATACGCCTGTACACCACA
CAGGAAGCCAGCAGAGCCCGCAAATCAGCACAGCTAGCTTGTGGTCTCCG
TCATCGCTTTATAACCCGCTGCATCTACGCCTCGACCCTCCCGCCTACAC
CACCACCGTCCTCCCCCACCTATCAGTTAATCATGCCGTCTGGAATGGGC
TTCTTGCTCTGCAAGGGCTGGCATCCAGGCACCCAACAAAACATGCGGAA
AGTGTGGATCGCCGAGCAAGAAACCGCCGCGCGGGAACAACGGGAGAAAG
AAGCCGCGGAAGCCTTGGGAAAAGAGTTGGAAGCGCAGCATTTTGCCGAG
ATGGCTAAGTCGAAAATGTGTAGCATGACGATGCTTGCCACGGACATCGA
GAAGAACAAGACTGCCAAAGGATCGATTGCCTTCCTCTATGCCAAGCCGC
CGGGCATGCTTTTGCAGGGCCAGGATGGGGTGGGTGGGGAGGAAGGGGGG
CAGGGAGGTTTGGAGGACGGGGCTGATGAGGCGGCACGGGCTTTTTTTAA
GCAGAATGAAGAGGCGGCCAAGGCGAGGAAAGTAAGAGAGCATAAGGAGA
GTGCTGCGTTTAGCATGCATGGGAAGTTAAGCGCACTGGAGCAGATGACG
GGGACACGTCGAAGGAAAGAGCTCACCATGGACGAGCAAGCCGAGCGTTT
CCCCATCCTCCGAAACGCCCCCGTTGAGGGCGCCTATGCGCAAAACGTTA
AATTGACTTTCAATCCCGTGGGCTTCACCATCCGCAACTGCCAGTGTCTT
AAATGTGGAGCGTACGGGCATACCAGTGGCGATAGGGAGTGTCCGCTCTG
GGGGGAGATAACGAGCTTGAACGCGGCGAGGTTGAGGAGGGAGGATCCCC
TGACATACATGGAAAAGGACGAGGAGGAGGGCGGGCCGGAGGGAGGGAAG
GAGGGAGGAAAGAAAGAGAAGGTGGTATTACGCTTGGCGGCATTGCCACG
GGAGATGGCGTTTGCGAGGGGGGAGGGGGGGGAGGTAGAGGAAGAGGAGG
AGGAGGGGGAGGAGAAGGGAACCAGGAGCACAAAGGAGAAGAAGCTGTTG
TTGAAGCGTTTGCGGCAGGGGGTGGTTAGGGAGGGAGGAAGTGTGGTGGA
TAAGGAGGAGGAGAGGGAGGAAGAGGAGGAAGAGGATAGACGGAAGCGAA
AGCGGAGGAGAAAGGAGAAGAGGAAGGAGAAAAAGAGGAGGAAGAAGCAG
AAGGAGAAGAAGCAGATGGGGGGTAGTAGTAAGCGAAAAAGTAGCAGTCG
CAGGAGGAACAGCAGCCGCAGCAGCTCTAGCAGCAGCAGCACTAGCAGCA
GCACTAGCAGCAGCAGCACCCATAAAAAAAAGTGGAAAAGTGCTCGTTGT
CTCCCACGAACTCATTGTCGGAAGGAGAGGGAAGGAGGTAGGGAGGGAGG
GAGAAGCGATTGA
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Synonyms
Publications