NO25G01460.1, NO25G01460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01460.1
Unique NameNO25G01460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2489
Alignment locationchr25:414394..417273 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:414394..417273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO25G01460.1 vs.
Match: EWM21662.1 (adaptor protein kanadaptin, partial [Nannochloropsis gaditana])

HSP 1 Score: 269.6 bits (688), Expect = 3.100e-68
Identity = 158/260 (60.77%), Postives = 183/260 (70.38%), Query Frame = 0
Query:    1 MEPPAPRH-----ETDA-PPPPPNPQPQAHQPSPSTSAYTPPSWGGRLSPEEPAITLEILRNGVEMDRLQLF---------------SSSSCEAAQHYYTFGRMPGAVTFVLDNPTISRVHAVVQFRKKDDTLHVQDLGSTHGTFVNKQRLPAREWQPLLVGDLLQFGQSTRLYLVTGPEALARPEVEEEELQAYRVERGKVRAWREGRRRRKEEQEGKEGEGERLEEGDEEGGGGVTWGMAEDAAEEEGEEGEEGREEG 240
            MEPPAPR      +TD  PP   + Q   H  S  +SAY PPSWGGR SP EPA+TLE+LRNGVE+DRL LF               SS +  + QHYYTFGR+PGAV FVLDNPT+SRVHAV QFRK D TLHVQDLGSTHGT++NKQRLP R W+ L VGD+LQFGQSTRLY+V+GPE L RPEVE+E+L+AYR ER KVRAWRE RRR+KE     +G  E    G+EE  GG++WG+ EDA  EE EE  EG   G
Sbjct:    1 MEPPAPRRPPPLPKTDTVPPASASAQAPPHPNSTISSAYMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREARRRKKEGLAAGQGPEEA---GEEE--GGISWGLGEDAEREEEEEEVEGGAGG 255          
The following BLAST results are available for this feature:
BLAST of NO25G01460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21662.13.100e-6860.77adaptor protein kanadaptin, partial [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01460NO25G01460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01460.1NO25G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01460.1.cds1NO25G01460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01460.1.cds2NO25G01460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G01460.1.cds3NO25G01460.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01460.1 ID=NO25G01460.1|Name=NO25G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2489bp
CACTACACAGCACGTATATACATACATATATATATAAGCCAATCCCTGCT
CCGCCTGCCATCATGGAACCACCGGCTCCTCGTCATGAAACCGATGCCCC
TCCTCCCCCTCCCAATCCCCAACCGCAAGCCCATCAACCCTCTCCTAGCA
CCTCCGCCTACACCCCTCCATCCTGGGGCGGGCGACTTTCTCCCGAGGAA
CCCGCCATAACTCTGGAAATACTGCGCAATGGCGTGGAGATGGACAGACT
CCAACTCTTCTCTTCCTCCTCATGCGAAGCAGCTCAGCACTACTACACCT
TTGGTCGTATGCCTGGTGCGGTGACATTCGTCCTCGACAACCCCACCATT
TCACGCGTGCACGCCGTTGTTCAATTTAGAAAGAAGGATGACACGTTGCA
CGTGCAAGACCTGGGAAGCACACATGGGACGTTTGTAAATAAACAACGCT
TGCCGGCAAGAGAATGGCAGCCACTTCTGGTGGGTGACCTGCTGCAATTC
GGCCAGTCTACGCGCCTTTACCTCGTCACCGGTCCTGAGGCCCTTGCACG
ACCGGAGGTGGAAGAAGAAGAACTGCAAGCGTATAGGGTCGAAAGGGGGA
AGGTTAGGGCATGGAGAGAGGGGAGGAGGAGGAGGAAGGAGGAGCAAGAA
GGAAAGGAAGGGGAGGGTGAGAGGTTGGAGGAGGGAGACGAAGAGGGAGG
GGGGGGGGTCACTTGGGGGATGGCTGAAGATGCGGCGGAAGAGGAGGGGG
AGGAAGGGGAGGAAGGCAGGGAGGAAGGGGAGAGGAAGGCAGAATTACCC
GATTATTTGAAAAACTTACCGGAACATCAACGGAGGGCGTTTGAGCGAGG
GAGGGAGGGAGGGATGGGGATGGTGACGGTGGACGAGAATGAGGTGCATG
AAAAGGATCGGAAGTTGTTCGAGAGGCTCAGGGCCAAGGCGTTGAAGATC
GAGCACATGGAGAGTGAGATTGGGAGGATTTATGCCAAAGAGAACTCCCA
GGGCGGACTGACCGATGGTCAGCGACAAGCTGTGGCCCGCAATGAGGAGA
GGATCGAGAAGCTCAAGGAAGAGGTGGAAGATATAGAGGAGCAAATCAGA
GGAAAGAACGCTGCCAGGCTGAAAGGGGCAGGGAAGGGCGGAAGGGGGCT
GCAAAAGAAAAAGAAAGGAGGGGAGAGGGAGGAGGACGGCGAGGAAGGAA
GAGAGGACGAAGATGACTTCTTTGACCGTGCAAAGGCAGGGGGGAAGGGA
GCGAGGGAGGGAGGGGGGACAGCGACCAACTGGCGTGTGCGCCGGGGACA
GAAGAAGGCGGATGGTGGGGGAGGGAAGGAGGGAGGGAGGGGGGGGTCCC
GCAGCAGTAGTAGCAGTGGCCTGATCGGAGAGGGTGGTGGTAAGGTAGAA
ACGTACGAGAGTTTATCAGCAAAGCTGGCACACGCACGCTTGGAGCTTGA
AAAATTGGAAGCTGCTCCTCCCTCCCTTCCTTCCTCCCTTCCTCCGTCGA
CTTTTGCTGCTGCTGCTGCTGGTGAGGGCGGGAAGGAGGAAGGGGGGAAG
GACGATACCCTTGAGCGGTTCATGGTTGAGAACGAGGCCAAGAAGCAGGC
GTCGGTTTTCAAGGGGTGGGTGAGGAAGAAAGAGGAGGTTGAGGAGGAGA
TTAGGAGGCTGGCTGCAGTGGTAGAGATGGTTCGGCCGGCGTTGCCGAGC
TTGAGAATGAAGGGAGGGAGGGAGGGGAAGAAGGAGGAGGGATTTGAAAG
AGGGAGAGTGGTGGAGGGAAAGGAGCAAACAGTGCCGCAGCAGCAGCATG
TGGAGGTGAAGGAGAAGAAGGAGGTCACGCTGGATCCGACGAAGGAGAAG
ACGCTCGCGGTGATGTTGCCCCATCCACCATCACGAGTTGCCGCAGCAGT
AGCCCCACCAGCTGTAGCGCAAGCAGCAGCAGCAGCAGCACCACCAACAG
TACGAGCAGCAGCACCACCACCAGCAGCGACAACATCGAAAGTTGTCAAA
GGTCCCAGCATGCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCACCACC
CTCCTCCTCCTCCTCCACTGCTGCTGCAGCTCCTCCTCCTCATTCCTCCT
CCTCGTCTTTCTCTTCCTTTCATAAACCTGCACTTCCCTCGTCCTTGCCA
GGGTCGGAAAAGCGTCCACTGCCAGAGGAGGAGACCATGCTCCCTCCCTC
CCCTCCTCTCCCTCTTCCTCCTCCCTCCCCATCTTCATCCACCTCAAACG
ACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCCGCAGCAGCAAAAAA
CAGAAGACTGTTACCATACCTTCCTCCCTCTTTTCGTCCAAGCGGGATGT
GGGAGAGAATGAGGCGGAAAGGGCGACACGCAAGGCTAAGGCTGCTGAAG
GAGAGGAGGCCTACGTGGCTTTCTACCACAAACCGAAGGACCAGAAGGGA
GATGGGCGGACAGCACTGAATGACAAACTTGGTTATTAG
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protein sequence of NO25G01460.1

>NO25G01460.1-protein ID=NO25G01460.1-protein|Name=NO25G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=809bp
MEPPAPRHETDAPPPPPNPQPQAHQPSPSTSAYTPPSWGGRLSPEEPAIT
LEILRNGVEMDRLQLFSSSSCEAAQHYYTFGRMPGAVTFVLDNPTISRVH
AVVQFRKKDDTLHVQDLGSTHGTFVNKQRLPAREWQPLLVGDLLQFGQST
RLYLVTGPEALARPEVEEEELQAYRVERGKVRAWREGRRRRKEEQEGKEG
EGERLEEGDEEGGGGVTWGMAEDAAEEEGEEGEEGREEGERKAELPDYLK
NLPEHQRRAFERGREGGMGMVTVDENEVHEKDRKLFERLRAKALKIEHME
SEIGRIYAKENSQGGLTDGQRQAVARNEERIEKLKEEVEDIEEQIRGKNA
ARLKGAGKGGRGLQKKKKGGEREEDGEEGREDEDDFFDRAKAGGKGAREG
GGTATNWRVRRGQKKADGGGGKEGGRGGSRSSSSSGLIGEGGGKVETYES
LSAKLAHARLELEKLEAAPPSLPSSLPPSTFAAAAAGEGGKEEGGKDDTL
ERFMVENEAKKQASVFKGWVRKKEEVEEEIRRLAAVVEMVRPALPSLRMK
GGREGKKEEGFERGRVVEGKEQTVPQQQHVEVKEKKEVTLDPTKEKTLAV
MLPHPPSRVAAAVAPPAVAQAAAAAAPPTVRAAAPPPAATTSKVVKGPSM
PPPPPPLPPPPPPSSSSSTAAAAPPPHSSSSSFSSFHKPALPSSLPGSEK
RPLPEEETMLPPSPPLPLPPPSPSSSTSNDSSSSSNSSNSSRSSKKQKTV
TIPSSLFSSKRDVGENEAERATRKAKAAEGEEAYVAFYHKPKDQKGDGRT
ALNDKLGY*
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mRNA from alignment at chr25:414394..417273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01460.1 ID=NO25G01460.1|Name=NO25G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2880bp|location=Sequence derived from alignment at chr25:414394..417273- (Nannochloropsis oceanica)
CACTACACAGCACGTATATACATACATATATATATAAGCCAATCCCTGCT CCGCCTGCCATCATGGAACCACCGGCTCCTCGTCATGAAACCGATGCCCC TCCTCCCCCTCCCAATCCCCAACCGCAAGCCCATCAACCCTCTCCTAGCA CCTCCGCCTACACCCCTCCATCCTGGGGCGGGCGACTTTCTCCCGAGGAA CCCGCCATAACTCTGGAAATACTGCGCAATGGCGTGGAGATGGACAGACT CCAACTCTTCTCTTCCTCCTCATGCGAAGCAGCTCAGCACTACTACACCT TTGGTCGTATGCCTGGTGCGGTGACATTCGTCCTCGACAACCCCACCATT TCACGCGTGCACGCCGTTGTTCAATTTAGAAAGAAGGATGACACGTTGCA CGTGCAAGACCTGGGAAGCACACATGGGACGTTTGTAAATAAACAACGTA CGTAGGGGAGAGGAAGGGGAGGAAGAAAGGAAACAACCTCTTTCTGTCAC TTCCCATCTCGTAGGATCAGTTTTGTGATGCGTTCCGATGTGAATGAAGC CATTTGTCCACATTATCAAAATATCCCTCCCACCCTTCCTCCCTTTCTCC CTTCCTCCCTCCTTCCCTGCAGGCTTGCCGGCAAGAGAATGGCAGCCACT TCTGGTGGGTGACCTGCTGCAATTCGGCCAGTCTACGCGCCTTTACCTCG TCACCGGTCCTGAGGCCCTTGCACGACCGGAGGTGGAAGAAGAAGAACTG CAAGCGTATAGGGTCGAAAGGGGGAAGGTTAGGGCATGGAGAGAGGGGAG GAGGAGGAGGAAGGAGGAGCAAGAAGGAAAGGAAGGGGAGGGTGAGAGGT TGGAGGAGGGAGACGAAGAGGGAGGGGGGGGGGTCACTTGGGGGATGGCT GAAGATGCGGCGGAAGAGGAGGGGGAGGAAGGGGAGGAAGGCAGGGAGGA AGGGGAGAGGAAGGCAGAATTACCCGATTATTTGAAAAACTTACCGGAAC ATCAACGGAGGGCGTTTGAGCGAGGGAGGGAGGGAGGGATGGGGATGGTG ACGGTGGACGAGAATGAGGTGCATGAAAAGGATCGGAAGTTGTTCGAGAG GCTCAGGGCCAAGGCGTTGAAGATCGAGCACATGGAGAGTGAGATTGGGA GGATTTATGCCAAAGAGAACTCCCAGGTACCTTACCTTCCCGTCCTCCCT CCCTCCTTCCTTTCCCCTTCCCTCCTTCACTTCCTCTCTATTTCACTGCA GGCAGAAGAGGACAGGAGCAATTATAAACAATGAATGGGAAGCAAAAACC CACCTCTCTTTCCCTCCCTCTCTCCCTCCCTTCCTCCTCCCTCCCTTCCT CTTCCCTCCATTGCTCCTTCCCTTCCTCCTTCCCTTCCCCAGGGCGGACT GACCGATGGTCAGCGACAAGCTGTGGCCCGCAATGAGGAGAGGATCGAGA AGCTCAAGGAAGAGGTGGAAGATATAGAGGAGCAAATCAGAGGAAAGAAC GCTGCCAGGCTGAAAGGGGCAGGGAAGGGCGGAAGGGGGCTGCAAAAGAA AAAGAAAGGAGGGGAGAGGGAGGAGGACGGCGAGGAAGGAAGAGAGGACG AAGATGACTTCTTTGACCGTGCAAAGGCAGGGGGGAAGGGAGCGAGGGAG GGAGGGGGGACAGCGACCAACTGGCGTGTGCGCCGGGGACAGAAGAAGGC GGATGGTGGGGGAGGGAAGGAGGGAGGGAGGGGGGGGTCCCGCAGCAGTA GTAGCAGTGGCCTGATCGGAGAGGGTGGTGGTAAGGTAGAAACGTACGAG AGTTTATCAGCAAAGCTGGCACACGCACGCTTGGAGCTTGAAAAATTGGA AGCTGCTCCTCCCTCCCTTCCTTCCTCCCTTCCTCCGTCGACTTTTGCTG CTGCTGCTGCTGGTGAGGGCGGGAAGGAGGAAGGGGGGAAGGACGATACC CTTGAGCGGTTCATGGTTGAGAACGAGGCCAAGAAGCAGGCGTCGGTTTT CAAGGGGTGGGTGAGGAAGAAAGAGGAGGTTGAGGAGGAGATTAGGAGGC TGGCTGCAGTGGTAGAGATGGTTCGGCCGGCGTTGCCGAGCTTGAGAATG AAGGGAGGGAGGGAGGGGAAGAAGGAGGAGGGATTTGAAAGAGGGAGAGT GGTGGAGGGAAAGGAGCAAACAGTGCCGCAGCAGCAGCATGTGGAGGTGA AGGAGAAGAAGGAGGTCACGCTGGATCCGACGAAGGAGAAGACGCTCGCG GTGATGTTGCCCCATCCACCATCACGAGTTGCCGCAGCAGTAGCCCCACC AGCTGTAGCGCAAGCAGCAGCAGCAGCAGCACCACCAACAGTACGAGCAG CAGCACCACCACCAGCAGCGACAACATCGAAAGTTGTCAAAGGTCCCAGC ATGCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCACCACCCTCCTCCTC CTCCTCCACTGCTGCTGCAGCTCCTCCTCCTCATTCCTCCTCCTCGTCTT TCTCTTCCTTTCATAAACCTGCACTTCCCTCGTCCTTGCCAGGGTCGGAA AAGCGTCCACTGCCAGAGGAGGAGACCATGCTCCCTCCCTCCCCTCCTCT CCCTCTTCCTCCTCCCTCCCCATCTTCATCCACCTCAAACGACAGCAGCA GCAGCAGCAACAGCAGCAACAGCAGCCGCAGCAGCAAAAAACAGAAGACT GTTACCATACCTTCCTCCCTCTTTTCGTCCAAGCGGGATGTGGGAGAGAA TGAGGCGGAAAGGGCGACACGCAAGGCTAAGGCTGCTGAAGGAGAGGAGG CCTACGTGGCTTTCTACCACAAACCGAAGGACCAGAAGGGAGATGGGCGG ACAGCACTGAATGACAAACTTGGTTATTAG
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Coding sequence (CDS) from alignment at chr25:414394..417273-

>NO25G01460.1 ID=NO25G01460.1|Name=NO25G01460.1|organism=Nannochloropsis oceanica|type=CDS|length=2427bp|location=Sequence derived from alignment at chr25:414394..417273- (Nannochloropsis oceanica)
ATGGAACCACCGGCTCCTCGTCATGAAACCGATGCCCCTCCTCCCCCTCC
CAATCCCCAACCGCAAGCCCATCAACCCTCTCCTAGCACCTCCGCCTACA
CCCCTCCATCCTGGGGCGGGCGACTTTCTCCCGAGGAACCCGCCATAACT
CTGGAAATACTGCGCAATGGCGTGGAGATGGACAGACTCCAACTCTTCTC
TTCCTCCTCATGCGAAGCAGCTCAGCACTACTACACCTTTGGTCGTATGC
CTGGTGCGGTGACATTCGTCCTCGACAACCCCACCATTTCACGCGTGCAC
GCCGTTGTTCAATTTAGAAAGAAGGATGACACGTTGCACGTGCAAGACCT
GGGAAGCACACATGGGACGTTTGTAAATAAACAACGCTTGCCGGCAAGAG
AATGGCAGCCACTTCTGGTGGGTGACCTGCTGCAATTCGGCCAGTCTACG
CGCCTTTACCTCGTCACCGGTCCTGAGGCCCTTGCACGACCGGAGGTGGA
AGAAGAAGAACTGCAAGCGTATAGGGTCGAAAGGGGGAAGGTTAGGGCAT
GGAGAGAGGGGAGGAGGAGGAGGAAGGAGGAGCAAGAAGGAAAGGAAGGG
GAGGGTGAGAGGTTGGAGGAGGGAGACGAAGAGGGAGGGGGGGGGGTCAC
TTGGGGGATGGCTGAAGATGCGGCGGAAGAGGAGGGGGAGGAAGGGGAGG
AAGGCAGGGAGGAAGGGGAGAGGAAGGCAGAATTACCCGATTATTTGAAA
AACTTACCGGAACATCAACGGAGGGCGTTTGAGCGAGGGAGGGAGGGAGG
GATGGGGATGGTGACGGTGGACGAGAATGAGGTGCATGAAAAGGATCGGA
AGTTGTTCGAGAGGCTCAGGGCCAAGGCGTTGAAGATCGAGCACATGGAG
AGTGAGATTGGGAGGATTTATGCCAAAGAGAACTCCCAGGGCGGACTGAC
CGATGGTCAGCGACAAGCTGTGGCCCGCAATGAGGAGAGGATCGAGAAGC
TCAAGGAAGAGGTGGAAGATATAGAGGAGCAAATCAGAGGAAAGAACGCT
GCCAGGCTGAAAGGGGCAGGGAAGGGCGGAAGGGGGCTGCAAAAGAAAAA
GAAAGGAGGGGAGAGGGAGGAGGACGGCGAGGAAGGAAGAGAGGACGAAG
ATGACTTCTTTGACCGTGCAAAGGCAGGGGGGAAGGGAGCGAGGGAGGGA
GGGGGGACAGCGACCAACTGGCGTGTGCGCCGGGGACAGAAGAAGGCGGA
TGGTGGGGGAGGGAAGGAGGGAGGGAGGGGGGGGTCCCGCAGCAGTAGTA
GCAGTGGCCTGATCGGAGAGGGTGGTGGTAAGGTAGAAACGTACGAGAGT
TTATCAGCAAAGCTGGCACACGCACGCTTGGAGCTTGAAAAATTGGAAGC
TGCTCCTCCCTCCCTTCCTTCCTCCCTTCCTCCGTCGACTTTTGCTGCTG
CTGCTGCTGGTGAGGGCGGGAAGGAGGAAGGGGGGAAGGACGATACCCTT
GAGCGGTTCATGGTTGAGAACGAGGCCAAGAAGCAGGCGTCGGTTTTCAA
GGGGTGGGTGAGGAAGAAAGAGGAGGTTGAGGAGGAGATTAGGAGGCTGG
CTGCAGTGGTAGAGATGGTTCGGCCGGCGTTGCCGAGCTTGAGAATGAAG
GGAGGGAGGGAGGGGAAGAAGGAGGAGGGATTTGAAAGAGGGAGAGTGGT
GGAGGGAAAGGAGCAAACAGTGCCGCAGCAGCAGCATGTGGAGGTGAAGG
AGAAGAAGGAGGTCACGCTGGATCCGACGAAGGAGAAGACGCTCGCGGTG
ATGTTGCCCCATCCACCATCACGAGTTGCCGCAGCAGTAGCCCCACCAGC
TGTAGCGCAAGCAGCAGCAGCAGCAGCACCACCAACAGTACGAGCAGCAG
CACCACCACCAGCAGCGACAACATCGAAAGTTGTCAAAGGTCCCAGCATG
CCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCACCACCCTCCTCCTCCTC
CTCCACTGCTGCTGCAGCTCCTCCTCCTCATTCCTCCTCCTCGTCTTTCT
CTTCCTTTCATAAACCTGCACTTCCCTCGTCCTTGCCAGGGTCGGAAAAG
CGTCCACTGCCAGAGGAGGAGACCATGCTCCCTCCCTCCCCTCCTCTCCC
TCTTCCTCCTCCCTCCCCATCTTCATCCACCTCAAACGACAGCAGCAGCA
GCAGCAACAGCAGCAACAGCAGCCGCAGCAGCAAAAAACAGAAGACTGTT
ACCATACCTTCCTCCCTCTTTTCGTCCAAGCGGGATGTGGGAGAGAATGA
GGCGGAAAGGGCGACACGCAAGGCTAAGGCTGCTGAAGGAGAGGAGGCCT
ACGTGGCTTTCTACCACAAACCGAAGGACCAGAAGGGAGATGGGCGGACA
GCACTGAATGACAAACTTGGTTATTAG
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Synonyms
Publications