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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr25 | genome | chr25:414394..417273 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G01460.1 vs.
Match: EWM21662.1 (adaptor protein kanadaptin, partial [Nannochloropsis gaditana]) HSP 1 Score: 269.6 bits (688), Expect = 3.100e-68 Identity = 158/260 (60.77%), Postives = 183/260 (70.38%), Query Frame = 0
Query: 1 MEPPAPRH-----ETDA-PPPPPNPQPQAHQPSPSTSAYTPPSWGGRLSPEEPAITLEILRNGVEMDRLQLF---------------SSSSCEAAQHYYTFGRMPGAVTFVLDNPTISRVHAVVQFRKKDDTLHVQDLGSTHGTFVNKQRLPAREWQPLLVGDLLQFGQSTRLYLVTGPEALARPEVEEEELQAYRVERGKVRAWREGRRRRKEEQEGKEGEGERLEEGDEEGGGGVTWGMAEDAAEEEGEEGEEGREEG 240
MEPPAPR +TD PP + Q H S +SAY PPSWGGR SP EPA+TLE+LRNGVE+DRL LF SS + + QHYYTFGR+PGAV FVLDNPT+SRVHAV QFRK D TLHVQDLGSTHGT++NKQRLP R W+ L VGD+LQFGQSTRLY+V+GPE L RPEVE+E+L+AYR ER KVRAWRE RRR+KE +G E G+EE GG++WG+ EDA EE EE EG G
Sbjct: 1 MEPPAPRRPPPLPKTDTVPPASASAQAPPHPNSTISSAYMPPSWGGRPSPSEPAVTLEVLRNGVEVDRLDLFASPTPSKPYVPADTASSQTPSSCQHYYTFGRLPGAVNFVLDNPTVSRVHAVCQFRKADGTLHVQDLGSTHGTYLNKQRLPPRSWESLHVGDILQFGQSTRLYVVSGPEVLGRPEVEDEKLEAYRTERAKVRAWREARRRKKEGLAAGQGPEEA---GEEE--GGISWGLGEDAEREEEEEEVEGGAGG 255
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G01460.1 ID=NO25G01460.1|Name=NO25G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2489bp CACTACACAGCACGTATATACATACATATATATATAAGCCAATCCCTGCT CCGCCTGCCATCATGGAACCACCGGCTCCTCGTCATGAAACCGATGCCCC TCCTCCCCCTCCCAATCCCCAACCGCAAGCCCATCAACCCTCTCCTAGCA CCTCCGCCTACACCCCTCCATCCTGGGGCGGGCGACTTTCTCCCGAGGAA CCCGCCATAACTCTGGAAATACTGCGCAATGGCGTGGAGATGGACAGACT CCAACTCTTCTCTTCCTCCTCATGCGAAGCAGCTCAGCACTACTACACCT TTGGTCGTATGCCTGGTGCGGTGACATTCGTCCTCGACAACCCCACCATT TCACGCGTGCACGCCGTTGTTCAATTTAGAAAGAAGGATGACACGTTGCA CGTGCAAGACCTGGGAAGCACACATGGGACGTTTGTAAATAAACAACGCT TGCCGGCAAGAGAATGGCAGCCACTTCTGGTGGGTGACCTGCTGCAATTC GGCCAGTCTACGCGCCTTTACCTCGTCACCGGTCCTGAGGCCCTTGCACG ACCGGAGGTGGAAGAAGAAGAACTGCAAGCGTATAGGGTCGAAAGGGGGA AGGTTAGGGCATGGAGAGAGGGGAGGAGGAGGAGGAAGGAGGAGCAAGAA GGAAAGGAAGGGGAGGGTGAGAGGTTGGAGGAGGGAGACGAAGAGGGAGG GGGGGGGGTCACTTGGGGGATGGCTGAAGATGCGGCGGAAGAGGAGGGGG AGGAAGGGGAGGAAGGCAGGGAGGAAGGGGAGAGGAAGGCAGAATTACCC GATTATTTGAAAAACTTACCGGAACATCAACGGAGGGCGTTTGAGCGAGG GAGGGAGGGAGGGATGGGGATGGTGACGGTGGACGAGAATGAGGTGCATG AAAAGGATCGGAAGTTGTTCGAGAGGCTCAGGGCCAAGGCGTTGAAGATC GAGCACATGGAGAGTGAGATTGGGAGGATTTATGCCAAAGAGAACTCCCA GGGCGGACTGACCGATGGTCAGCGACAAGCTGTGGCCCGCAATGAGGAGA GGATCGAGAAGCTCAAGGAAGAGGTGGAAGATATAGAGGAGCAAATCAGA GGAAAGAACGCTGCCAGGCTGAAAGGGGCAGGGAAGGGCGGAAGGGGGCT GCAAAAGAAAAAGAAAGGAGGGGAGAGGGAGGAGGACGGCGAGGAAGGAA GAGAGGACGAAGATGACTTCTTTGACCGTGCAAAGGCAGGGGGGAAGGGA GCGAGGGAGGGAGGGGGGACAGCGACCAACTGGCGTGTGCGCCGGGGACA GAAGAAGGCGGATGGTGGGGGAGGGAAGGAGGGAGGGAGGGGGGGGTCCC GCAGCAGTAGTAGCAGTGGCCTGATCGGAGAGGGTGGTGGTAAGGTAGAA ACGTACGAGAGTTTATCAGCAAAGCTGGCACACGCACGCTTGGAGCTTGA AAAATTGGAAGCTGCTCCTCCCTCCCTTCCTTCCTCCCTTCCTCCGTCGA CTTTTGCTGCTGCTGCTGCTGGTGAGGGCGGGAAGGAGGAAGGGGGGAAG GACGATACCCTTGAGCGGTTCATGGTTGAGAACGAGGCCAAGAAGCAGGC GTCGGTTTTCAAGGGGTGGGTGAGGAAGAAAGAGGAGGTTGAGGAGGAGA TTAGGAGGCTGGCTGCAGTGGTAGAGATGGTTCGGCCGGCGTTGCCGAGC TTGAGAATGAAGGGAGGGAGGGAGGGGAAGAAGGAGGAGGGATTTGAAAG AGGGAGAGTGGTGGAGGGAAAGGAGCAAACAGTGCCGCAGCAGCAGCATG TGGAGGTGAAGGAGAAGAAGGAGGTCACGCTGGATCCGACGAAGGAGAAG ACGCTCGCGGTGATGTTGCCCCATCCACCATCACGAGTTGCCGCAGCAGT AGCCCCACCAGCTGTAGCGCAAGCAGCAGCAGCAGCAGCACCACCAACAG TACGAGCAGCAGCACCACCACCAGCAGCGACAACATCGAAAGTTGTCAAA GGTCCCAGCATGCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCACCACC CTCCTCCTCCTCCTCCACTGCTGCTGCAGCTCCTCCTCCTCATTCCTCCT CCTCGTCTTTCTCTTCCTTTCATAAACCTGCACTTCCCTCGTCCTTGCCA GGGTCGGAAAAGCGTCCACTGCCAGAGGAGGAGACCATGCTCCCTCCCTC CCCTCCTCTCCCTCTTCCTCCTCCCTCCCCATCTTCATCCACCTCAAACG ACAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCCGCAGCAGCAAAAAA CAGAAGACTGTTACCATACCTTCCTCCCTCTTTTCGTCCAAGCGGGATGT GGGAGAGAATGAGGCGGAAAGGGCGACACGCAAGGCTAAGGCTGCTGAAG GAGAGGAGGCCTACGTGGCTTTCTACCACAAACCGAAGGACCAGAAGGGA GATGGGCGGACAGCACTGAATGACAAACTTGGTTATTAG back to topprotein sequence of NO25G01460.1 >NO25G01460.1-protein ID=NO25G01460.1-protein|Name=NO25G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=809bp MEPPAPRHETDAPPPPPNPQPQAHQPSPSTSAYTPPSWGGRLSPEEPAIT LEILRNGVEMDRLQLFSSSSCEAAQHYYTFGRMPGAVTFVLDNPTISRVH AVVQFRKKDDTLHVQDLGSTHGTFVNKQRLPAREWQPLLVGDLLQFGQST RLYLVTGPEALARPEVEEEELQAYRVERGKVRAWREGRRRRKEEQEGKEG EGERLEEGDEEGGGGVTWGMAEDAAEEEGEEGEEGREEGERKAELPDYLK NLPEHQRRAFERGREGGMGMVTVDENEVHEKDRKLFERLRAKALKIEHME SEIGRIYAKENSQGGLTDGQRQAVARNEERIEKLKEEVEDIEEQIRGKNA ARLKGAGKGGRGLQKKKKGGEREEDGEEGREDEDDFFDRAKAGGKGAREG GGTATNWRVRRGQKKADGGGGKEGGRGGSRSSSSSGLIGEGGGKVETYES LSAKLAHARLELEKLEAAPPSLPSSLPPSTFAAAAAGEGGKEEGGKDDTL ERFMVENEAKKQASVFKGWVRKKEEVEEEIRRLAAVVEMVRPALPSLRMK GGREGKKEEGFERGRVVEGKEQTVPQQQHVEVKEKKEVTLDPTKEKTLAV MLPHPPSRVAAAVAPPAVAQAAAAAAPPTVRAAAPPPAATTSKVVKGPSM PPPPPPLPPPPPPSSSSSTAAAAPPPHSSSSSFSSFHKPALPSSLPGSEK RPLPEEETMLPPSPPLPLPPPSPSSSTSNDSSSSSNSSNSSRSSKKQKTV TIPSSLFSSKRDVGENEAERATRKAKAAEGEEAYVAFYHKPKDQKGDGRT ALNDKLGY* back to topmRNA from alignment at chr25:414394..417273- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G01460.1 ID=NO25G01460.1|Name=NO25G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=2880bp|location=Sequence derived from alignment at chr25:414394..417273- (Nannochloropsis oceanica) CACTACACAGCACGTATATACATACATATATATATAAGCCAATCCCTGCT
CCGCCTGCCATCATGGAACCACCGGCTCCTCGTCATGAAACCGATGCCCC
TCCTCCCCCTCCCAATCCCCAACCGCAAGCCCATCAACCCTCTCCTAGCA
CCTCCGCCTACACCCCTCCATCCTGGGGCGGGCGACTTTCTCCCGAGGAA
CCCGCCATAACTCTGGAAATACTGCGCAATGGCGTGGAGATGGACAGACT
CCAACTCTTCTCTTCCTCCTCATGCGAAGCAGCTCAGCACTACTACACCT
TTGGTCGTATGCCTGGTGCGGTGACATTCGTCCTCGACAACCCCACCATT
TCACGCGTGCACGCCGTTGTTCAATTTAGAAAGAAGGATGACACGTTGCA
CGTGCAAGACCTGGGAAGCACACATGGGACGTTTGTAAATAAACAACGTA
CGTAGGGGAGAGGAAGGGGAGGAAGAAAGGAAACAACCTCTTTCTGTCAC
TTCCCATCTCGTAGGATCAGTTTTGTGATGCGTTCCGATGTGAATGAAGC
CATTTGTCCACATTATCAAAATATCCCTCCCACCCTTCCTCCCTTTCTCC
CTTCCTCCCTCCTTCCCTGCAGGCTTGCCGGCAAGAGAATGGCAGCCACT
TCTGGTGGGTGACCTGCTGCAATTCGGCCAGTCTACGCGCCTTTACCTCG
TCACCGGTCCTGAGGCCCTTGCACGACCGGAGGTGGAAGAAGAAGAACTG
CAAGCGTATAGGGTCGAAAGGGGGAAGGTTAGGGCATGGAGAGAGGGGAG
GAGGAGGAGGAAGGAGGAGCAAGAAGGAAAGGAAGGGGAGGGTGAGAGGT
TGGAGGAGGGAGACGAAGAGGGAGGGGGGGGGGTCACTTGGGGGATGGCT
GAAGATGCGGCGGAAGAGGAGGGGGAGGAAGGGGAGGAAGGCAGGGAGGA
AGGGGAGAGGAAGGCAGAATTACCCGATTATTTGAAAAACTTACCGGAAC
ATCAACGGAGGGCGTTTGAGCGAGGGAGGGAGGGAGGGATGGGGATGGTG
ACGGTGGACGAGAATGAGGTGCATGAAAAGGATCGGAAGTTGTTCGAGAG
GCTCAGGGCCAAGGCGTTGAAGATCGAGCACATGGAGAGTGAGATTGGGA
GGATTTATGCCAAAGAGAACTCCCAGGTACCTTACCTTCCCGTCCTCCCT
CCCTCCTTCCTTTCCCCTTCCCTCCTTCACTTCCTCTCTATTTCACTGCA
GGCAGAAGAGGACAGGAGCAATTATAAACAATGAATGGGAAGCAAAAACC
CACCTCTCTTTCCCTCCCTCTCTCCCTCCCTTCCTCCTCCCTCCCTTCCT
CTTCCCTCCATTGCTCCTTCCCTTCCTCCTTCCCTTCCCCAGGGCGGACT
GACCGATGGTCAGCGACAAGCTGTGGCCCGCAATGAGGAGAGGATCGAGA
AGCTCAAGGAAGAGGTGGAAGATATAGAGGAGCAAATCAGAGGAAAGAAC
GCTGCCAGGCTGAAAGGGGCAGGGAAGGGCGGAAGGGGGCTGCAAAAGAA
AAAGAAAGGAGGGGAGAGGGAGGAGGACGGCGAGGAAGGAAGAGAGGACG
AAGATGACTTCTTTGACCGTGCAAAGGCAGGGGGGAAGGGAGCGAGGGAG
GGAGGGGGGACAGCGACCAACTGGCGTGTGCGCCGGGGACAGAAGAAGGC
GGATGGTGGGGGAGGGAAGGAGGGAGGGAGGGGGGGGTCCCGCAGCAGTA
GTAGCAGTGGCCTGATCGGAGAGGGTGGTGGTAAGGTAGAAACGTACGAG
AGTTTATCAGCAAAGCTGGCACACGCACGCTTGGAGCTTGAAAAATTGGA
AGCTGCTCCTCCCTCCCTTCCTTCCTCCCTTCCTCCGTCGACTTTTGCTG
CTGCTGCTGCTGGTGAGGGCGGGAAGGAGGAAGGGGGGAAGGACGATACC
CTTGAGCGGTTCATGGTTGAGAACGAGGCCAAGAAGCAGGCGTCGGTTTT
CAAGGGGTGGGTGAGGAAGAAAGAGGAGGTTGAGGAGGAGATTAGGAGGC
TGGCTGCAGTGGTAGAGATGGTTCGGCCGGCGTTGCCGAGCTTGAGAATG
AAGGGAGGGAGGGAGGGGAAGAAGGAGGAGGGATTTGAAAGAGGGAGAGT
GGTGGAGGGAAAGGAGCAAACAGTGCCGCAGCAGCAGCATGTGGAGGTGA
AGGAGAAGAAGGAGGTCACGCTGGATCCGACGAAGGAGAAGACGCTCGCG
GTGATGTTGCCCCATCCACCATCACGAGTTGCCGCAGCAGTAGCCCCACC
AGCTGTAGCGCAAGCAGCAGCAGCAGCAGCACCACCAACAGTACGAGCAG
CAGCACCACCACCAGCAGCGACAACATCGAAAGTTGTCAAAGGTCCCAGC
ATGCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCACCACCCTCCTCCTC
CTCCTCCACTGCTGCTGCAGCTCCTCCTCCTCATTCCTCCTCCTCGTCTT
TCTCTTCCTTTCATAAACCTGCACTTCCCTCGTCCTTGCCAGGGTCGGAA
AAGCGTCCACTGCCAGAGGAGGAGACCATGCTCCCTCCCTCCCCTCCTCT
CCCTCTTCCTCCTCCCTCCCCATCTTCATCCACCTCAAACGACAGCAGCA
GCAGCAGCAACAGCAGCAACAGCAGCCGCAGCAGCAAAAAACAGAAGACT
GTTACCATACCTTCCTCCCTCTTTTCGTCCAAGCGGGATGTGGGAGAGAA
TGAGGCGGAAAGGGCGACACGCAAGGCTAAGGCTGCTGAAGGAGAGGAGG
CCTACGTGGCTTTCTACCACAAACCGAAGGACCAGAAGGGAGATGGGCGG
ACAGCACTGAATGACAAACTTGGTTATTAG back to topCoding sequence (CDS) from alignment at chr25:414394..417273- >NO25G01460.1 ID=NO25G01460.1|Name=NO25G01460.1|organism=Nannochloropsis oceanica|type=CDS|length=2427bp|location=Sequence derived from alignment at chr25:414394..417273- (Nannochloropsis oceanica) ATGGAACCACCGGCTCCTCGTCATGAAACCGATGCCCCTCCTCCCCCTCC CAATCCCCAACCGCAAGCCCATCAACCCTCTCCTAGCACCTCCGCCTACA CCCCTCCATCCTGGGGCGGGCGACTTTCTCCCGAGGAACCCGCCATAACT CTGGAAATACTGCGCAATGGCGTGGAGATGGACAGACTCCAACTCTTCTC TTCCTCCTCATGCGAAGCAGCTCAGCACTACTACACCTTTGGTCGTATGC CTGGTGCGGTGACATTCGTCCTCGACAACCCCACCATTTCACGCGTGCAC GCCGTTGTTCAATTTAGAAAGAAGGATGACACGTTGCACGTGCAAGACCT GGGAAGCACACATGGGACGTTTGTAAATAAACAACGCTTGCCGGCAAGAG AATGGCAGCCACTTCTGGTGGGTGACCTGCTGCAATTCGGCCAGTCTACG CGCCTTTACCTCGTCACCGGTCCTGAGGCCCTTGCACGACCGGAGGTGGA AGAAGAAGAACTGCAAGCGTATAGGGTCGAAAGGGGGAAGGTTAGGGCAT GGAGAGAGGGGAGGAGGAGGAGGAAGGAGGAGCAAGAAGGAAAGGAAGGG GAGGGTGAGAGGTTGGAGGAGGGAGACGAAGAGGGAGGGGGGGGGGTCAC TTGGGGGATGGCTGAAGATGCGGCGGAAGAGGAGGGGGAGGAAGGGGAGG AAGGCAGGGAGGAAGGGGAGAGGAAGGCAGAATTACCCGATTATTTGAAA AACTTACCGGAACATCAACGGAGGGCGTTTGAGCGAGGGAGGGAGGGAGG GATGGGGATGGTGACGGTGGACGAGAATGAGGTGCATGAAAAGGATCGGA AGTTGTTCGAGAGGCTCAGGGCCAAGGCGTTGAAGATCGAGCACATGGAG AGTGAGATTGGGAGGATTTATGCCAAAGAGAACTCCCAGGGCGGACTGAC CGATGGTCAGCGACAAGCTGTGGCCCGCAATGAGGAGAGGATCGAGAAGC TCAAGGAAGAGGTGGAAGATATAGAGGAGCAAATCAGAGGAAAGAACGCT GCCAGGCTGAAAGGGGCAGGGAAGGGCGGAAGGGGGCTGCAAAAGAAAAA GAAAGGAGGGGAGAGGGAGGAGGACGGCGAGGAAGGAAGAGAGGACGAAG ATGACTTCTTTGACCGTGCAAAGGCAGGGGGGAAGGGAGCGAGGGAGGGA GGGGGGACAGCGACCAACTGGCGTGTGCGCCGGGGACAGAAGAAGGCGGA TGGTGGGGGAGGGAAGGAGGGAGGGAGGGGGGGGTCCCGCAGCAGTAGTA GCAGTGGCCTGATCGGAGAGGGTGGTGGTAAGGTAGAAACGTACGAGAGT TTATCAGCAAAGCTGGCACACGCACGCTTGGAGCTTGAAAAATTGGAAGC TGCTCCTCCCTCCCTTCCTTCCTCCCTTCCTCCGTCGACTTTTGCTGCTG CTGCTGCTGGTGAGGGCGGGAAGGAGGAAGGGGGGAAGGACGATACCCTT GAGCGGTTCATGGTTGAGAACGAGGCCAAGAAGCAGGCGTCGGTTTTCAA GGGGTGGGTGAGGAAGAAAGAGGAGGTTGAGGAGGAGATTAGGAGGCTGG CTGCAGTGGTAGAGATGGTTCGGCCGGCGTTGCCGAGCTTGAGAATGAAG GGAGGGAGGGAGGGGAAGAAGGAGGAGGGATTTGAAAGAGGGAGAGTGGT GGAGGGAAAGGAGCAAACAGTGCCGCAGCAGCAGCATGTGGAGGTGAAGG AGAAGAAGGAGGTCACGCTGGATCCGACGAAGGAGAAGACGCTCGCGGTG ATGTTGCCCCATCCACCATCACGAGTTGCCGCAGCAGTAGCCCCACCAGC TGTAGCGCAAGCAGCAGCAGCAGCAGCACCACCAACAGTACGAGCAGCAG CACCACCACCAGCAGCGACAACATCGAAAGTTGTCAAAGGTCCCAGCATG CCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCACCACCCTCCTCCTCCTC CTCCACTGCTGCTGCAGCTCCTCCTCCTCATTCCTCCTCCTCGTCTTTCT CTTCCTTTCATAAACCTGCACTTCCCTCGTCCTTGCCAGGGTCGGAAAAG CGTCCACTGCCAGAGGAGGAGACCATGCTCCCTCCCTCCCCTCCTCTCCC TCTTCCTCCTCCCTCCCCATCTTCATCCACCTCAAACGACAGCAGCAGCA GCAGCAACAGCAGCAACAGCAGCCGCAGCAGCAAAAAACAGAAGACTGTT ACCATACCTTCCTCCCTCTTTTCGTCCAAGCGGGATGTGGGAGAGAATGA GGCGGAAAGGGCGACACGCAAGGCTAAGGCTGCTGAAGGAGAGGAGGCCT ACGTGGCTTTCTACCACAAACCGAAGGACCAGAAGGGAGATGGGCGGACA GCACTGAATGACAAACTTGGTTATTAG back to top
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