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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr25 | genome | chr25:395852..398722 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G01400.1 vs.
Match: EWM20974.1 (Protein of unknown function DUF2064 [Nannochloropsis gaditana]) HSP 1 Score: 398.3 bits (1022), Expect = 5.800e-107 Identity = 217/398 (54.52%), Postives = 269/398 (67.59%), Query Frame = 0
Query: 4 PAAPVAPFLLVLLLSKSAWARRKSGWLEPWPRRQQQQQQQKVLHRPSSGSTNLTSPCPHHHDQQQPHFSSLTSASFFSSATAATAAFNIINP-MLDHGNPPPPPPTQPVWWGEGNSNNNNDAVPNDNTFNPPTRASQSRGLSSGLAPRVYLFTKYPVPGRAKTRIIPALGKEGAARLHRQLVRQALQTLDTFRKGS--SSRSSSSSSISERKVVDCRIRYDDALAGEDGESKMKAWLGLDWIYEPQGPGDLGVRMAAATGLADGGEQGVGPVVLIGSDCPFIKPKHLKEALAALEDEKDEVEGEGEEGGGGGGNDLVLGPAKDGGYWLIGLRRPCAALFQGVDWGTERVLKQTLAIAAELGMKVKLLEVLHDMDRPEDLKLWSPPPLTSIIIPTLNEA 399
P AP P LLVL +S + A+R SGWLEPWPR+ QQ + + +T+L P H+SSL +A+ S + + + P +LD GN PP PP + V WG NDA +D + T AS + + LAPRVYLFTKYPVPG+ KTR+IPALG+EGA RLHR+LV + L +LD FR+ R + E VVDCR+RYDD L G+ G + M+AWLG+DWIYE QGPGDLG R+AAAT +ADGGE+GVG VV++GSDCPF++P+HL+ A+ AL D + EG GEE GG+DLVLGPA DGGYWL+GLRRPC ALF+ VDWGT RVL QTLA A LG+KVKLLE L DMDRP+DL LW PPPLTS++IP +NEA
Sbjct: 5 PPAPT-PVLLVLTISHAVCAKRNSGWLEPWPRKIVQQDCRGYFPK----TTDLVLPA----SVATSHYSSLWTATALPSLSMVINSISAARPPLLDRGNVPPIPPARDVGWGGDGRPERNDAY-HDKIYGQHTPASLAGSATPSLAPRVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQ---EGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWRPPPLTSVVIPVVNEA 389
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G01400.1 ID=NO25G01400.1|Name=NO25G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2871bp TTTGATTTTAGGGTGGGGAGGTTGGCACAGGTGGCCATTTACACCATAGA TTGATTGATTTATGCACTCTCCTCCCTAACCACCCATAGTCTCCCTCTCC ACACATATCAATCGGCTTATACGCACATAACTGAATTCAACCAAACTGTG AACCACGGTTTGAGGCGATCTCACGAAAGAAAAAAATTCAACCACAGCCC CAGAGAAACACGATCGTGATGTGCTCCGAGAGCCTCGTGTCTCCTCCCTT CTGAACAACCACGAACTTTCACTGCCCTGACACCAACGCACTTGCGTCTC TTCGTCTAATTTCAGCACATCACAGCCGCGGCACATTTCCTATCGCAACC ACACCATCAAGGCAGGCTCCGCTTCTCTGCTCGTTCGCGAGTCGTGTCGG TTGCCAAGCCGCCTCAACATCAAGTAGACACGCACTGCGCCGAAATGCGT TCCCCCGCAGCCCCGGTAGCACCCTTCCTCCTTGTCCTGCTCCTGTCCAA GTCGGCCTGGGCGAGAAGAAAGAGTGGTTGGTTGGAACCCTGGCCAAGAC GGCAGCAGCAGCAGCAGCAGCAGAAGGTGCTGCACCGTCCTTCTTCTGGC AGCACCAATCTCACATCTCCCTGCCCTCACCATCACGACCAACAACAACC CCACTTCTCATCCTTGACCTCTGCCTCTTTCTTTTCATCCGCCACGGCCG CGACAGCAGCTTTCAACATCATTAACCCCATGCTCGACCACGGTAACCCT CCCCCACCCCCTCCCACACAACCTGTCTGGTGGGGCGAGGGTAATAGCAA CAACAACAACGACGCTGTGCCTAACGACAACACGTTCAACCCACCCACTC GCGCGTCTCAATCAAGAGGGTTATCATCGGGCTTGGCACCGCGTGTGTAC CTTTTCACCAAGTACCCTGTGCCTGGGCGTGCCAAGACGAGAATTATCCC TGCCTTGGGGAAAGAGGGAGCGGCGAGGCTTCATCGACAGTTGGTCCGAC AGGCGTTACAGACGTTGGATACTTTTCGAAAGGGCAGCAGTAGCAGAAGT AGTAGTAGCAGCAGCATCAGCGAACGGAAAGTTGTGGACTGTCGGATCCG GTATGACGATGCTCTCGCAGGGGAGGATGGAGAGAGCAAGATGAAGGCAT GGTTGGGCTTAGACTGGATCTATGAACCCCAAGGACCGGGGGATTTAGGT GTGAGAATGGCGGCAGCTACGGGGTTGGCAGATGGGGGGGAGCAAGGGGT GGGTCCGGTGGTGTTAATTGGGTCAGATTGTCCGTTTATCAAGCCGAAAC ATTTGAAGGAGGCGCTCGCGGCGCTGGAGGATGAGAAGGACGAGGTGGAG GGGGAGGGGGAGGAAGGGGGTGGAGGAGGAGGGAATGACTTGGTCCTAGG TCCTGCAAAAGATGGGGGCTATTGGTTGATAGGGCTCCGTCGTCCGTGTG CCGCGCTGTTCCAAGGTGTCGACTGGGGCACCGAGAGGGTGTTAAAACAG ACGCTGGCCATCGCAGCTGAGCTAGGGATGAAAGTCAAGCTTTTGGAGGT CCTCCATGATATGGATCGACCGGAAGATTTGAAATTGTGGTCTCCTCCGC CCTTGACCTCCATCATTATTCCCACTCTGAATGAAGCTTCCAACCTAGCA GCGACCCTGGCCGCTGTCTACAACGGGACTAGCAGGCACCACGCCGCAGC CCTCGCTCTCTTGGCAACGGCTTCCGCTGCTGGAACTGCCGTGGAAGGGA GAAAAGGAGGATTGAAAATGAGGAAGAAAGGCATGAGCAACTCCACTTCC TCTTCCATTGCTTCTTCCAGTACCCTCATGGCCAGCAACGCCTCCTCCTC CTCCTCCTCCTCCTCCTCCTCTTCCTTTTCCTCCTCCTCCTCCCCACCGC CCAACCCCCTCCCTCCCTCCCTTCCCACCACTCCAACGCCCAAACATGTA AGGAAAAACGGCCTCAAAATCCACGATCCAAATCTCGAAGTCATTGTCGT GGACGGCGGCTCCACTGACGGCACCCAACGTCTCGCGCTAGCCCTCGGTG CCCGCCTTGTCCAATCCCCTCTCGCCAACCGCGCCGCTCAATTGAATCTC GGTGCCGCAGAAGCAGCAGGCGACATCCTCCTCTTCCTTCACGGCGACAC CCTCCTTCCCCCCACCTGGGAAGACGATGTTCGAGGGGCCTTTGCCGGCG ACCCCACCATCCTTGCCACTGCCTTCAAGCTTAAAATTATGGGCCGACGC CCCTTCTACCGTGTCATCGAAGCGAGCATCACTGCGCGTAGCTCCTGGCC CTGGTCCATGCCCTACGGCGATCAGGCCTTGGCTGTCCGGAGGAAGGTAT TTGATGTATTGGGAGGCTTCCCTGACGTGCCAATCATGGAAGACTACTCC TTCGTCCAAGCATTGCGGGTGCTGGCCAAGAGGCCGCCCCCTCCCAAGCC GAGGAGTCGGAGGAAGGGGGGGAAGAAGGGAGGGAGGGAGGGGAGGGGAG ATGGAGGGATGTACGGGGGCAGAATCGAGTTGTTGCCGAGTTGTGTGCGG ACGTCAGGGAGGAGGTGGGAGAGGGTGGGGGTACTCCGGACGACGCTCAT CAACCAGTGCGTAATTCTGGGGTGGCATTTAAAGGTGGAACCGGACCGTC TAGCTGTCTTCTATCGACAGGCGAAACATGGAGGAGGGAGGGAGGGAGGG AGGTGGTGGGAGAGGAAGGGGGAGCCAATGACATTTGTGAGGGCGAGGGG CGTGAAGGAAGGGGAGGAAGAAGAGGAGGAGGAAGAGGAGGAGGAGGGGG AGGAAGAGGAGCGGAGAAGGATGGAGGAGAAGGCGTTCGCGGCTGTGTTG CCGTTGGTAGGTGGATTTTGA back to topprotein sequence of NO25G01400.1 >NO25G01400.1-protein ID=NO25G01400.1-protein|Name=NO25G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=809bp MRSPAAPVAPFLLVLLLSKSAWARRKSGWLEPWPRRQQQQQQQKVLHRPS SGSTNLTSPCPHHHDQQQPHFSSLTSASFFSSATAATAAFNIINPMLDHG NPPPPPPTQPVWWGEGNSNNNNDAVPNDNTFNPPTRASQSRGLSSGLAPR VYLFTKYPVPGRAKTRIIPALGKEGAARLHRQLVRQALQTLDTFRKGSSS RSSSSSSISERKVVDCRIRYDDALAGEDGESKMKAWLGLDWIYEPQGPGD LGVRMAAATGLADGGEQGVGPVVLIGSDCPFIKPKHLKEALAALEDEKDE VEGEGEEGGGGGGNDLVLGPAKDGGYWLIGLRRPCAALFQGVDWGTERVL KQTLAIAAELGMKVKLLEVLHDMDRPEDLKLWSPPPLTSIIIPTLNEASN LAATLAAVYNGTSRHHAAALALLATASAAGTAVEGRKGGLKMRKKGMSNS TSSSIASSSTLMASNASSSSSSSSSSSFSSSSSPPPNPLPPSLPTTPTPK HVRKNGLKIHDPNLEVIVVDGGSTDGTQRLALALGARLVQSPLANRAAQL NLGAAEAAGDILLFLHGDTLLPPTWEDDVRGAFAGDPTILATAFKLKIMG RRPFYRVIEASITARSSWPWSMPYGDQALAVRRKVFDVLGGFPDVPIMED YSFVQALRVLAKRPPPPKPRSRRKGGKKGGREGRGDGGMYGGRIELLPSC VRTSGRRWERVGVLRTTLINQCVILGWHLKVEPDRLAVFYRQAKHGGGRE GGRWWERKGEPMTFVRARGVKEGEEEEEEEEEEEGEEEERRRMEEKAFAA VLPLVGGF* back to topmRNA from alignment at chr25:395852..398722- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G01400.1 ID=NO25G01400.1|Name=NO25G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2871bp|location=Sequence derived from alignment at chr25:395852..398722- (Nannochloropsis oceanica) TTTGATTTTAGGGTGGGGAGGTTGGCACAGGTGGCCATTTACACCATAGA
TTGATTGATTTATGCACTCTCCTCCCTAACCACCCATAGTCTCCCTCTCC
ACACATATCAATCGGCTTATACGCACATAACTGAATTCAACCAAACTGTG
AACCACGGTTTGAGGCGATCTCACGAAAGAAAAAAATTCAACCACAGCCC
CAGAGAAACACGATCGTGATGTGCTCCGAGAGCCTCGTGTCTCCTCCCTT
CTGAACAACCACGAACTTTCACTGCCCTGACACCAACGCACTTGCGTCTC
TTCGTCTAATTTCAGCACATCACAGCCGCGGCACATTTCCTATCGCAACC
ACACCATCAAGGCAGGCTCCGCTTCTCTGCTCGTTCGCGAGTCGTGTCGG
TTGCCAAGCCGCCTCAACATCAAGTAGACACGCACTGCGCCGAAATGCGT
TCCCCCGCAGCCCCGGTAGCACCCTTCCTCCTTGTCCTGCTCCTGTCCAA
GTCGGCCTGGGCGAGAAGAAAGAGTGGTTGGTTGGAACCCTGGCCAAGAC
GGCAGCAGCAGCAGCAGCAGCAGAAGGTGCTGCACCGTCCTTCTTCTGGC
AGCACCAATCTCACATCTCCCTGCCCTCACCATCACGACCAACAACAACC
CCACTTCTCATCCTTGACCTCTGCCTCTTTCTTTTCATCCGCCACGGCCG
CGACAGCAGCTTTCAACATCATTAACCCCATGCTCGACCACGGTAACCCT
CCCCCACCCCCTCCCACACAACCTGTCTGGTGGGGCGAGGGTAATAGCAA
CAACAACAACGACGCTGTGCCTAACGACAACACGTTCAACCCACCCACTC
GCGCGTCTCAATCAAGAGGGTTATCATCGGGCTTGGCACCGCGTGTGTAC
CTTTTCACCAAGTACCCTGTGCCTGGGCGTGCCAAGACGAGAATTATCCC
TGCCTTGGGGAAAGAGGGAGCGGCGAGGCTTCATCGACAGTTGGTCCGAC
AGGCGTTACAGACGTTGGATACTTTTCGAAAGGGCAGCAGTAGCAGAAGT
AGTAGTAGCAGCAGCATCAGCGAACGGAAAGTTGTGGACTGTCGGATCCG
GTATGACGATGCTCTCGCAGGGGAGGATGGAGAGAGCAAGATGAAGGCAT
GGTTGGGCTTAGACTGGATCTATGAACCCCAAGGACCGGGGGATTTAGGT
GTGAGAATGGCGGCAGCTACGGGGTTGGCAGATGGGGGGGAGCAAGGGGT
GGGTCCGGTGGTGTTAATTGGGTCAGATTGTCCGTTTATCAAGCCGAAAC
ATTTGAAGGAGGCGCTCGCGGCGCTGGAGGATGAGAAGGACGAGGTGGAG
GGGGAGGGGGAGGAAGGGGGTGGAGGAGGAGGGAATGACTTGGTCCTAGG
TCCTGCAAAAGATGGGGGCTATTGGTTGATAGGGCTCCGTCGTCCGTGTG
CCGCGCTGTTCCAAGGTGTCGACTGGGGCACCGAGAGGGTGTTAAAACAG
ACGCTGGCCATCGCAGCTGAGCTAGGGATGAAAGTCAAGCTTTTGGAGGT
CCTCCATGATATGGATCGACCGGAAGATTTGAAATTGTGGTCTCCTCCGC
CCTTGACCTCCATCATTATTCCCACTCTGAATGAAGCTTCCAACCTAGCA
GCGACCCTGGCCGCTGTCTACAACGGGACTAGCAGGCACCACGCCGCAGC
CCTCGCTCTCTTGGCAACGGCTTCCGCTGCTGGAACTGCCGTGGAAGGGA
GAAAAGGAGGATTGAAAATGAGGAAGAAAGGCATGAGCAACTCCACTTCC
TCTTCCATTGCTTCTTCCAGTACCCTCATGGCCAGCAACGCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCTTCCTTTTCCTCCTCCTCCTCCCCACCGC
CCAACCCCCTCCCTCCCTCCCTTCCCACCACTCCAACGCCCAAACATGTA
AGGAAAAACGGCCTCAAAATCCACGATCCAAATCTCGAAGTCATTGTCGT
GGACGGCGGCTCCACTGACGGCACCCAACGTCTCGCGCTAGCCCTCGGTG
CCCGCCTTGTCCAATCCCCTCTCGCCAACCGCGCCGCTCAATTGAATCTC
GGTGCCGCAGAAGCAGCAGGCGACATCCTCCTCTTCCTTCACGGCGACAC
CCTCCTTCCCCCCACCTGGGAAGACGATGTTCGAGGGGCCTTTGCCGGCG
ACCCCACCATCCTTGCCACTGCCTTCAAGCTTAAAATTATGGGCCGACGC
CCCTTCTACCGTGTCATCGAAGCGAGCATCACTGCGCGTAGCTCCTGGCC
CTGGTCCATGCCCTACGGCGATCAGGCCTTGGCTGTCCGGAGGAAGGTAT
TTGATGTATTGGGAGGCTTCCCTGACGTGCCAATCATGGAAGACTACTCC
TTCGTCCAAGCATTGCGGGTGCTGGCCAAGAGGCCGCCCCCTCCCAAGCC
GAGGAGTCGGAGGAAGGGGGGGAAGAAGGGAGGGAGGGAGGGGAGGGGAG
ATGGAGGGATGTACGGGGGCAGAATCGAGTTGTTGCCGAGTTGTGTGCGG
ACGTCAGGGAGGAGGTGGGAGAGGGTGGGGGTACTCCGGACGACGCTCAT
CAACCAGTGCGTAATTCTGGGGTGGCATTTAAAGGTGGAACCGGACCGTC
TAGCTGTCTTCTATCGACAGGCGAAACATGGAGGAGGGAGGGAGGGAGGG
AGGTGGTGGGAGAGGAAGGGGGAGCCAATGACATTTGTGAGGGCGAGGGG
CGTGAAGGAAGGGGAGGAAGAAGAGGAGGAGGAAGAGGAGGAGGAGGGGG
AGGAAGAGGAGCGGAGAAGGATGGAGGAGAAGGCGTTCGCGGCTGTGTTG
CCGTTGGTAGGTGGATTTTGA back to topCoding sequence (CDS) from alignment at chr25:395852..398722- >NO25G01400.1 ID=NO25G01400.1|Name=NO25G01400.1|organism=Nannochloropsis oceanica|type=CDS|length=2427bp|location=Sequence derived from alignment at chr25:395852..398722- (Nannochloropsis oceanica) ATGCGTTCCCCCGCAGCCCCGGTAGCACCCTTCCTCCTTGTCCTGCTCCT GTCCAAGTCGGCCTGGGCGAGAAGAAAGAGTGGTTGGTTGGAACCCTGGC CAAGACGGCAGCAGCAGCAGCAGCAGCAGAAGGTGCTGCACCGTCCTTCT TCTGGCAGCACCAATCTCACATCTCCCTGCCCTCACCATCACGACCAACA ACAACCCCACTTCTCATCCTTGACCTCTGCCTCTTTCTTTTCATCCGCCA CGGCCGCGACAGCAGCTTTCAACATCATTAACCCCATGCTCGACCACGGT AACCCTCCCCCACCCCCTCCCACACAACCTGTCTGGTGGGGCGAGGGTAA TAGCAACAACAACAACGACGCTGTGCCTAACGACAACACGTTCAACCCAC CCACTCGCGCGTCTCAATCAAGAGGGTTATCATCGGGCTTGGCACCGCGT GTGTACCTTTTCACCAAGTACCCTGTGCCTGGGCGTGCCAAGACGAGAAT TATCCCTGCCTTGGGGAAAGAGGGAGCGGCGAGGCTTCATCGACAGTTGG TCCGACAGGCGTTACAGACGTTGGATACTTTTCGAAAGGGCAGCAGTAGC AGAAGTAGTAGTAGCAGCAGCATCAGCGAACGGAAAGTTGTGGACTGTCG GATCCGGTATGACGATGCTCTCGCAGGGGAGGATGGAGAGAGCAAGATGA AGGCATGGTTGGGCTTAGACTGGATCTATGAACCCCAAGGACCGGGGGAT TTAGGTGTGAGAATGGCGGCAGCTACGGGGTTGGCAGATGGGGGGGAGCA AGGGGTGGGTCCGGTGGTGTTAATTGGGTCAGATTGTCCGTTTATCAAGC CGAAACATTTGAAGGAGGCGCTCGCGGCGCTGGAGGATGAGAAGGACGAG GTGGAGGGGGAGGGGGAGGAAGGGGGTGGAGGAGGAGGGAATGACTTGGT CCTAGGTCCTGCAAAAGATGGGGGCTATTGGTTGATAGGGCTCCGTCGTC CGTGTGCCGCGCTGTTCCAAGGTGTCGACTGGGGCACCGAGAGGGTGTTA AAACAGACGCTGGCCATCGCAGCTGAGCTAGGGATGAAAGTCAAGCTTTT GGAGGTCCTCCATGATATGGATCGACCGGAAGATTTGAAATTGTGGTCTC CTCCGCCCTTGACCTCCATCATTATTCCCACTCTGAATGAAGCTTCCAAC CTAGCAGCGACCCTGGCCGCTGTCTACAACGGGACTAGCAGGCACCACGC CGCAGCCCTCGCTCTCTTGGCAACGGCTTCCGCTGCTGGAACTGCCGTGG AAGGGAGAAAAGGAGGATTGAAAATGAGGAAGAAAGGCATGAGCAACTCC ACTTCCTCTTCCATTGCTTCTTCCAGTACCCTCATGGCCAGCAACGCCTC CTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTTTTCCTCCTCCTCCTCCC CACCGCCCAACCCCCTCCCTCCCTCCCTTCCCACCACTCCAACGCCCAAA CATGTAAGGAAAAACGGCCTCAAAATCCACGATCCAAATCTCGAAGTCAT TGTCGTGGACGGCGGCTCCACTGACGGCACCCAACGTCTCGCGCTAGCCC TCGGTGCCCGCCTTGTCCAATCCCCTCTCGCCAACCGCGCCGCTCAATTG AATCTCGGTGCCGCAGAAGCAGCAGGCGACATCCTCCTCTTCCTTCACGG CGACACCCTCCTTCCCCCCACCTGGGAAGACGATGTTCGAGGGGCCTTTG CCGGCGACCCCACCATCCTTGCCACTGCCTTCAAGCTTAAAATTATGGGC CGACGCCCCTTCTACCGTGTCATCGAAGCGAGCATCACTGCGCGTAGCTC CTGGCCCTGGTCCATGCCCTACGGCGATCAGGCCTTGGCTGTCCGGAGGA AGGTATTTGATGTATTGGGAGGCTTCCCTGACGTGCCAATCATGGAAGAC TACTCCTTCGTCCAAGCATTGCGGGTGCTGGCCAAGAGGCCGCCCCCTCC CAAGCCGAGGAGTCGGAGGAAGGGGGGGAAGAAGGGAGGGAGGGAGGGGA GGGGAGATGGAGGGATGTACGGGGGCAGAATCGAGTTGTTGCCGAGTTGT GTGCGGACGTCAGGGAGGAGGTGGGAGAGGGTGGGGGTACTCCGGACGAC GCTCATCAACCAGTGCGTAATTCTGGGGTGGCATTTAAAGGTGGAACCGG ACCGTCTAGCTGTCTTCTATCGACAGGCGAAACATGGAGGAGGGAGGGAG GGAGGGAGGTGGTGGGAGAGGAAGGGGGAGCCAATGACATTTGTGAGGGC GAGGGGCGTGAAGGAAGGGGAGGAAGAAGAGGAGGAGGAAGAGGAGGAGG AGGGGGAGGAAGAGGAGCGGAGAAGGATGGAGGAGAAGGCGTTCGCGGCT GTGTTGCCGTTGGTAGGTGGATTTTGA back to top
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