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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr25 | genome | chr25:361483..363232 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G01290.1 vs.
Match: EWM21562.1 (hypothetical protein Naga_100012g9 [Nannochloropsis gaditana]) HSP 1 Score: 469.9 bits (1208), Expect = 6.100e-129 Identity = 230/312 (73.72%), Postives = 264/312 (84.62%), Query Frame = 0
Query: 7 IVAGACLLLTSPLPVTS-WVGPFSRS-SASARAAPPPIVICPGFGNDQIDYLNPMNLGEEAGMVQALRRRGFPVYVVPVKRTDWLKFANGLVTPSFWSQTMTPRDPSFAWYLDKVITTVETAVTEAEGNKALLVGHSAGGWLARAALGDGTWAGAAAEEASDLVRGCVTLGSPHLPPAPPGMDVTRGALVHVHVNYPGAFLKNKGISYLTVAGVAVEGKRDQRNRAERRKVTAGSETGRERIEDFAWRSYVQVCGRGDVIGDGVVPVEAAHLEGAKQISLKDVFHSINAPKAWYGSEEVIDLWLRQVEGLKY 317
++AG L+ +TS W+GPF+ + SAS PPP+VICPGFGNDQIDYLNPMNLGEEAGMVQALRRRGFPVYVVPVKRTDWLKFANGL TPSFWSQTMTPRD SF WYL+KV+ TVE A +E G KAL+VGHSAGGWLARAALGDG W G AA+E DLV+GCVTLG+PHLPPAPPG+ VTRGAL HVH+NYPGAFLK +G+ Y+TVAGVAVEG+R+ + A RR+ GS IEDFA+RSYVQVCGRGDV+GDGVVP+EAAHLEGAKQ++L++VFHSINAPKAWYGSEEVID WL +VEG++Y
Sbjct: 9 VIAGVVFFLSCKHLLTSAWIGPFATAPSASLPRDPPPVVICPGFGNDQIDYLNPMNLGEEAGMVQALRRRGFPVYVVPVKRTDWLKFANGLFTPSFWSQTMTPRDLSFGWYLNKVVQTVERAASEHPGRKALVVGHSAGGWLARAALGDGAWTGKAAKEVRDLVQGCVTLGTPHLPPAPPGVCVTRGALGHVHLNYPGAFLKPQGLFYMTVAGVAVEGRREPQG-AGRRERRGGS------IEDFAFRSYVQVCGRGDVVGDGVVPLEAAHLEGAKQVNLQNVFHSINAPKAWYGSEEVIDSWLGEVEGIRY 313
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G01290.1 ID=NO25G01290.1|Name=NO25G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1213bp
AAACACACAGGGCAGAAGGATCCAATGAAGCCTTTCCTAACAATAGTGGC
CGGGGCATGTTTGCTTCTCACAAGCCCGCTGCCAGTCACCTCGTGGGTAG
GACCATTCTCCCGGTCATCAGCCTCCGCTCGCGCAGCTCCTCCGCCCATT
GTCATTTGCCCAGGCTTTGGGAATGACCAAATCGATTACTTGAATCCAAT
GAACCTGGGGGAGGAAGCCGGCATGGTTCAAGCATTGCGTCGTCGAGGCT
TTCCTGTGTATGTAGTCCCCGTCAAGCGCACGGACTGGCTGAAGTTCGCC
AACGGCCTCGTCACCCCCTCCTTCTGGTCTCAAACCATGACGCCCCGCGA
CCCATCCTTTGCTTGGTACCTCGACAAAGTCATCACAACGGTAGAAACTG
CCGTGACTGAAGCGGAAGGAAATAAAGCCCTTCTAGTAGGACATTCGGCA
GGTGGTTGGCTGGCGCGTGCTGCCCTCGGCGACGGCACCTGGGCCGGAGC
TGCAGCAGAAGAAGCGAGTGATCTAGTGAGGGGATGCGTGACTTTGGGGA
GTCCGCATTTGCCACCAGCTCCACCCGGTATGGACGTGACCCGAGGGGCG
CTGGTACACGTCCATGTCAATTACCCGGGAGCTTTTTTAAAAAACAAGGG
AATTTCGTACCTCACTGTTGCCGGGGTCGCCGTGGAAGGAAAGAGGGATC
AGAGGAATAGGGCAGAGCGGAGAAAGGTGACAGCAGGAAGCGAGACTGGG
AGGGAGAGGATTGAGGATTTCGCATGGCGGAGCTATGTCCAAGTGTGTGG
GAGGGGAGATGTCATTGGCGATGGTGTGGTGCCAGTGGAAGCAGCGCATT
TGGAAGGCGCGAAACAGATAAGTTTGAAAGATGTTTTTCATTCCATTAAT
GCCCCCAAGGCCTGGTATGGGAGTGAAGAGGTGATCGATCTGTGGTTGAG
GCAGGTAGAGGGATTGAAGTATTGAGGAAGGGCGAGAAGAATATGGAAGG
GACGGGTGGGAAAAGGTCAGGGAGGGAGGAACGATGGACCAGGGGCAGAT
GGAAAAAGTGGTGTATATTAGGATGAAGAAATATCGATTCTTGATTGCTG
AGGTGAGTCCTGTGTGTGCTAATCCTGCGTGTGCTTTATGAGTAGGTGAA
GTTTTGCCAGAAGAAAAAAACGACGGGAGTGGCGGCAACGGTTGCCTTTC
TTCCGTGCTTAGG back to topprotein sequence of NO25G01290.1 >NO25G01290.1-protein ID=NO25G01290.1-protein|Name=NO25G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MKPFLTIVAGACLLLTSPLPVTSWVGPFSRSSASARAAPPPIVICPGFGN
DQIDYLNPMNLGEEAGMVQALRRRGFPVYVVPVKRTDWLKFANGLVTPSF
WSQTMTPRDPSFAWYLDKVITTVETAVTEAEGNKALLVGHSAGGWLARAA
LGDGTWAGAAAEEASDLVRGCVTLGSPHLPPAPPGMDVTRGALVHVHVNY
PGAFLKNKGISYLTVAGVAVEGKRDQRNRAERRKVTAGSETGRERIEDFA
WRSYVQVCGRGDVIGDGVVPVEAAHLEGAKQISLKDVFHSINAPKAWYGS
EEVIDLWLRQVEGLKY* back to topmRNA from alignment at chr25:361483..363232- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G01290.1 ID=NO25G01290.1|Name=NO25G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp|location=Sequence derived from alignment at chr25:361483..363232- (Nannochloropsis oceanica)
AAACACACAGGGCAGAAGGATCCAATGAAGCCTTTCCTAACAATAGTGGC
CGGGGCATGTTTGCTTCTCACAAGCCCGCTGCCAGTCACCTCGTGGGTAG
GACCATTCTCCCGGTCATCAGCCTCCGCTCGCGCAGCTCCTCCGCCCATT
GTCATTTGCCCAGGTACTTTACAGTGAAGAATGGATATCATTTTCTGCAA
GTTGGAGGTAAAAGGCTGTAGAGGAGGCTCTCTTTCTCCAACCTCCTCCC
CCTTTCCCTACTACCACCTCAGGCTTTGGGAATGACCAAATCGATTACTT
GAATCCAATGAACCTGGGGGAGGAAGCCGGCATGGTTCAAGCATTGCGTC
GTCGAGGCTTTCCTGTGTATGTAGTCCCCGTCAAGCGCACGGACTGGCTG
AAGGTATGAGGGAGGGGTTTTGGGAGGGGCAGGAAGTCCTGGCATTTTTT
TGGAGGGCATCTTCACCGAATTGTTCGCATGTGTTTCTCGATCGTTTCCC
GCTGGGAGAGCGAGAGGATGTTGAAAGGTAGAACATAAGTGACAGGCATC
TACGAGATCCACAATCATATCTCCCTCCCTTCCTCCCTCCCTATCCAGTT
CGCCAACGGCCTCGTCACCCCCTCCTTCTGGTCTCAAACCATGACGCCCC
GCGACCCATCCTTTGCTTGGTACCTCGACAAAGTCATCACAACGGTAGAA
ACTGCCGTGACTGAAGCGGAAGGAAATAAAGCCCTTCTAGTAGGACATTC
GGCAGGTGGTTGGCTGGCGCGTGCTGCCCTCGGCGACGGCACCTGGGCCG
GAGCTGCAGCAGAAGAAGCGAGTGATCTAGTGAGGGGATGCGTGACTTTG
GGGAGTCCGCATTTGCCACCAGCTCCACCCGGTATGGACGTGACCCGAGG
GGCGCTGGTACACGTCCATGTCAATTACCCGGGTATGCTCCTCCTTCTCT
CCCTCCTTCCCTCCCTCCCTCTTTCTCTCCCTCCCTCCCTCCCTCCTTCG
CTCTCTCTTTTCCTGGGAGGCTTGCATGTGGGGCCCCTTATTCGGCCGAT
TTTTAACAATAGGGATGCCAAATTGCTGTAAGGATCTTCCTTCGTTTCCC
CCTTAAATGTGTACGTTTTGTTTTTAATGTCGCTCATTCCTCCCTCTCTC
CCTCCCTCCCTCTAGGAGCTTTTTTAAAAAACAAGGGAATTTCGTACCTC
ACTGTTGCCGGGGTCGCCGTGGAAGGAAAGAGGGATCAGAGGAATAGGGC
AGAGCGGAGAAAGGTGACAGCAGGAAGCGAGACTGGGAGGGAGAGGATTG
AGGATTTCGCATGGCGGAGCTATGTCCAAGTGTGTGGGAGGGGAGATGTC
ATTGGCGATGGTGTGGTGCCAGTGGAAGCAGCGCATTTGGAAGGCGCGAA
ACAGATAAGTTTGAAAGATGTTTTTCATTCCATTAATGCCCCCAAGGCCT
GGTATGGGAGTGAAGAGGTGATCGATCTGTGGTTGAGGCAGGTAGAGGGA
TTGAAGTATTGAGGAAGGGCGAGAAGAATATGGAAGGGACGGGTGGGAAA
AGGTCAGGGAGGGAGGAACGATGGACCAGGGGCAGATGGAAAAAGTGGTG
TATATTAGGATGAAGAAATATCGATTCTTGATTGCTGAGGTGAGTCCTGT
GTGTGCTAATCCTGCGTGTGCTTTATGAGTAGGTGAAGTTTTGCCAGAAG
AAAAAAACGACGGGAGTGGCGGCAACGGTTGCCTTTCTTCCGTGCTTAGG
back to topCoding sequence (CDS) from alignment at chr25:361483..363232- >NO25G01290.1 ID=NO25G01290.1|Name=NO25G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at chr25:361483..363232- (Nannochloropsis oceanica)
ATGAAGCCTTTCCTAACAATAGTGGCCGGGGCATGTTTGCTTCTCACAAG
CCCGCTGCCAGTCACCTCGTGGGTAGGACCATTCTCCCGGTCATCAGCCT
CCGCTCGCGCAGCTCCTCCGCCCATTGTCATTTGCCCAGGCTTTGGGAAT
GACCAAATCGATTACTTGAATCCAATGAACCTGGGGGAGGAAGCCGGCAT
GGTTCAAGCATTGCGTCGTCGAGGCTTTCCTGTGTATGTAGTCCCCGTCA
AGCGCACGGACTGGCTGAAGTTCGCCAACGGCCTCGTCACCCCCTCCTTC
TGGTCTCAAACCATGACGCCCCGCGACCCATCCTTTGCTTGGTACCTCGA
CAAAGTCATCACAACGGTAGAAACTGCCGTGACTGAAGCGGAAGGAAATA
AAGCCCTTCTAGTAGGACATTCGGCAGGTGGTTGGCTGGCGCGTGCTGCC
CTCGGCGACGGCACCTGGGCCGGAGCTGCAGCAGAAGAAGCGAGTGATCT
AGTGAGGGGATGCGTGACTTTGGGGAGTCCGCATTTGCCACCAGCTCCAC
CCGGTATGGACGTGACCCGAGGGGCGCTGGTACACGTCCATGTCAATTAC
CCGGGAGCTTTTTTAAAAAACAAGGGAATTTCGTACCTCACTGTTGCCGG
GGTCGCCGTGGAAGGAAAGAGGGATCAGAGGAATAGGGCAGAGCGGAGAA
AGGTGACAGCAGGAAGCGAGACTGGGAGGGAGAGGATTGAGGATTTCGCA
TGGCGGAGCTATGTCCAAGTGTGTGGGAGGGGAGATGTCATTGGCGATGG
TGTGGTGCCAGTGGAAGCAGCGCATTTGGAAGGCGCGAAACAGATAAGTT
TGAAAGATGTTTTTCATTCCATTAATGCCCCCAAGGCCTGGTATGGGAGT
GAAGAGGTGATCGATCTGTGGTTGAGGCAGGTAGAGGGATTGAAGTATTG
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