NO25G01220.1, NO25G01220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01220.1
Unique NameNO25G01220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1252
Alignment locationchr25:339206..340457 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:339206..340457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01220.1 vs.
Match: EWM21581.1 (hypothetical protein Naga_100012g16 [Nannochloropsis gaditana])

HSP 1 Score: 352.1 bits (902), Expect = 1.500e-93
Identity = 185/266 (69.55%), Postives = 213/266 (80.08%), Query Frame = 0 
Query:    1 MVRLVSNAGSTSSLVTNTPSVLLPPPKPLTKDGLLALNAKPVTLIGFGSLLSETSSRMTFPQLVNFRLGRVQGYRRLFRHPAAIFFERGIALPASKEYSSLSVEPVEGDDSSSSGFVCSLFDVLDFNVQNFVDREEEFAFTMAQYMEL-EGEKRVGQGLMCLATTDAHVEERWGEGYIKRKYGVHGLNSIWE---LDSTILPCPVYLRHCVLSAGKKGGKEGLAYQSFVKETFLADRKTTIEEHLIRRPDIMLMEPPASVLGRYSG 263
            MVR+V+   + +     TP        P+T + L ALN K VTLIGFGSLLSETSSR TFPQLVNFRLGRV GYRRLFRHPAAIFFERGIA P +KE SSLSVE V    +   GFVCSLFDV+ FN+Q+F+DREEEFAFTMA++ EL EG+KR G+GLMCLATTDAHVE+RWG+GYIKRKYGVHGLNSIW+    +S ILPCPVYLRHCVLSA +K G++G A++SF++ETFLADRKTTIEEHL RRPDI+   PP SV GRYSG
Sbjct:   18 MVRIVN---AVTGATAYTPPPFTHAGVPMTTEDLHALNGKSVTLIGFGSLLSETSSRTTFPQLVNFRLGRVNGYRRLFRHPAAIFFERGIARPETKEISSLSVEYVGEGATGEEGFVCSLFDVMHFNLQDFLDREEEFAFTMAEFTELGEGDKR-GKGLMCLATTDAHVEDRWGKGYIKRKYGVHGLNSIWDEWGPESGILPCPVYLRHCVLSA-RKQGQDGPAFRSFLRETFLADRKTTIEEHLARRPDILQTNPPPSVSGRYSG 278
The following BLAST results are available for this feature:
BLAST of NO25G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21581.11.500e-9369.55hypothetical protein Naga_100012g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01220NO25G01220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01220.1NO25G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01220.1.cds1NO25G01220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01220.1 ID=NO25G01220.1|Name=NO25G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp
ATTTTCAATAACCTGTCTTATTGTTGGCTTATGCATGCCATTATGCCACC
CCGAGGCCAACGACCACTTCCAGCTGAACAATGAGGGTGTGTTGGCCATT
TGGCGGCAGCAGAAATGTTGAAGCACTGCGTGATAAAGGTGAAAGGCCTC
GCGCGTCTGCATACAACAGACGCGGCAACGGCAGGAGCGTTGATCTCATT
CATGCTCATCACAAACTCACCTACTCAAGGGGTCGCGCTATCCTGTTACT
GGTGAGACTTTACTGCTACTAGCATATGCACCTTGACTCAAGTACAACCT
TCATGCTATACAAAGACAGGCCAGCAAGGATAGACCCCGTGACTCAAGCA
ATTCCTCAAAATACAACACATAGACATGGTCCGACTCGTCAGCAACGCCG
GCAGCACCAGCTCCCTCGTGACCAACACACCCTCAGTCTTACTACCACCA
CCCAAGCCGCTGACTAAAGATGGACTTCTTGCCCTAAACGCCAAGCCTGT
CACCCTCATTGGCTTCGGCAGCCTCCTGAGCGAGACCTCGTCCCGGATGA
CCTTTCCACAGCTGGTCAATTTTAGGCTTGGCCGCGTACAAGGCTACCGG
AGGCTCTTTCGCCACCCAGCAGCCATCTTCTTTGAGCGAGGCATTGCTCT
CCCTGCCTCCAAGGAATATTCCAGTCTGAGTGTGGAACCTGTTGAAGGAG
ATGACTCTTCTTCCAGCGGCTTTGTATGCAGCTTGTTTGACGTCCTTGAC
TTCAATGTTCAGAATTTCGTTGACCGAGAAGAGGAGTTTGCCTTCACTAT
GGCACAATACATGGAGCTGGAGGGGGAGAAAAGGGTTGGCCAAGGGCTGA
TGTGTCTGGCAACAACCGATGCCCACGTGGAAGAGAGGTGGGGGGAGGGG
TATATCAAACGAAAGTACGGCGTACACGGTTTAAACAGTATTTGGGAACT
GGATAGCACGATTTTACCTTGCCCTGTTTATCTGCGGCACTGTGTGCTGT
CGGCGGGGAAGAAGGGGGGAAAGGAGGGGTTGGCGTATCAAAGTTTTGTT
AAGGAAACGTTTTTGGCAGATCGCAAGACGACGATTGAGGAGCATTTGAT
ACGGAGGCCGGATATAATGCTGATGGAGCCCCCGGCGAGTGTGCTAGGAC
GGTATAGCGGGTAGGGATATCATTAGACGATAAGATTTCAAATATAAAAT
AGAATGAAAAATAATGAAAGGAAATGAAAACGGGTGAATCGAAAAGTGTG
AG
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protein sequence of NO25G01220.1

>NO25G01220.1-protein ID=NO25G01220.1-protein|Name=NO25G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MVRLVSNAGSTSSLVTNTPSVLLPPPKPLTKDGLLALNAKPVTLIGFGSL
LSETSSRMTFPQLVNFRLGRVQGYRRLFRHPAAIFFERGIALPASKEYSS
LSVEPVEGDDSSSSGFVCSLFDVLDFNVQNFVDREEEFAFTMAQYMELEG
EKRVGQGLMCLATTDAHVEERWGEGYIKRKYGVHGLNSIWELDSTILPCP
VYLRHCVLSAGKKGGKEGLAYQSFVKETFLADRKTTIEEHLIRRPDIMLM
EPPASVLGRYSG*
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mRNA from alignment at chr25:339206..340457+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01220.1 ID=NO25G01220.1|Name=NO25G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp|location=Sequence derived from alignment at chr25:339206..340457+ (Nannochloropsis oceanica)
ATTTTCAATAACCTGTCTTATTGTTGGCTTATGCATGCCATTATGCCACC
CCGAGGCCAACGACCACTTCCAGCTGAACAATGAGGGTGTGTTGGCCATT
TGGCGGCAGCAGAAATGTTGAAGCACTGCGTGATAAAGGTGAAAGGCCTC
GCGCGTCTGCATACAACAGACGCGGCAACGGCAGGAGCGTTGATCTCATT
CATGCTCATCACAAACTCACCTACTCAAGGGGTCGCGCTATCCTGTTACT
GGTGAGACTTTACTGCTACTAGCATATGCACCTTGACTCAAGTACAACCT
TCATGCTATACAAAGACAGGCCAGCAAGGATAGACCCCGTGACTCAAGCA
ATTCCTCAAAATACAACACATAGACATGGTCCGACTCGTCAGCAACGCCG
GCAGCACCAGCTCCCTCGTGACCAACACACCCTCAGTCTTACTACCACCA
CCCAAGCCGCTGACTAAAGATGGACTTCTTGCCCTAAACGCCAAGCCTGT
CACCCTCATTGGCTTCGGCAGCCTCCTGAGCGAGACCTCGTCCCGGATGA
CCTTTCCACAGCTGGTCAATTTTAGGCTTGGCCGCGTACAAGGCTACCGG
AGGCTCTTTCGCCACCCAGCAGCCATCTTCTTTGAGCGAGGCATTGCTCT
CCCTGCCTCCAAGGAATATTCCAGTCTGAGTGTGGAACCTGTTGAAGGAG
ATGACTCTTCTTCCAGCGGCTTTGTATGCAGCTTGTTTGACGTCCTTGAC
TTCAATGTTCAGAATTTCGTTGACCGAGAAGAGGAGTTTGCCTTCACTAT
GGCACAATACATGGAGCTGGAGGGGGAGAAAAGGGTTGGCCAAGGGCTGA
TGTGTCTGGCAACAACCGATGCCCACGTGGAAGAGAGGTGGGGGGAGGGG
TATATCAAACGAAAGTACGGCGTACACGGTTTAAACAGTATTTGGGAACT
GGATAGCACGATTTTACCTTGCCCTGTTTATCTGCGGCACTGTGTGCTGT
CGGCGGGGAAGAAGGGGGGAAAGGAGGGGTTGGCGTATCAAAGTTTTGTT
AAGGAAACGTTTTTGGCAGATCGCAAGACGACGATTGAGGAGCATTTGAT
ACGGAGGCCGGATATAATGCTGATGGAGCCCCCGGCGAGTGTGCTAGGAC
GGTATAGCGGGTAGGGATATCATTAGACGATAAGATTTCAAATATAAAAT
AGAATGAAAAATAATGAAAGGAAATGAAAACGGGTGAATCGAAAAGTGTG
AG
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Coding sequence (CDS) from alignment at chr25:339206..340457+

>NO25G01220.1 ID=NO25G01220.1|Name=NO25G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at chr25:339206..340457+ (Nannochloropsis oceanica)
ATGGTCCGACTCGTCAGCAACGCCGGCAGCACCAGCTCCCTCGTGACCAA
CACACCCTCAGTCTTACTACCACCACCCAAGCCGCTGACTAAAGATGGAC
TTCTTGCCCTAAACGCCAAGCCTGTCACCCTCATTGGCTTCGGCAGCCTC
CTGAGCGAGACCTCGTCCCGGATGACCTTTCCACAGCTGGTCAATTTTAG
GCTTGGCCGCGTACAAGGCTACCGGAGGCTCTTTCGCCACCCAGCAGCCA
TCTTCTTTGAGCGAGGCATTGCTCTCCCTGCCTCCAAGGAATATTCCAGT
CTGAGTGTGGAACCTGTTGAAGGAGATGACTCTTCTTCCAGCGGCTTTGT
ATGCAGCTTGTTTGACGTCCTTGACTTCAATGTTCAGAATTTCGTTGACC
GAGAAGAGGAGTTTGCCTTCACTATGGCACAATACATGGAGCTGGAGGGG
GAGAAAAGGGTTGGCCAAGGGCTGATGTGTCTGGCAACAACCGATGCCCA
CGTGGAAGAGAGGTGGGGGGAGGGGTATATCAAACGAAAGTACGGCGTAC
ACGGTTTAAACAGTATTTGGGAACTGGATAGCACGATTTTACCTTGCCCT
GTTTATCTGCGGCACTGTGTGCTGTCGGCGGGGAAGAAGGGGGGAAAGGA
GGGGTTGGCGTATCAAAGTTTTGTTAAGGAAACGTTTTTGGCAGATCGCA
AGACGACGATTGAGGAGCATTTGATACGGAGGCCGGATATAATGCTGATG
GAGCCCCCGGCGAGTGTGCTAGGACGGTATAGCGGGTAG
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Synonyms
Publications