NO25G01060.1, NO25G01060.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO25G01060.1
Unique Name	NO25G01060.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2962
Alignment location	chr25:294180..297457 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr25	genome	chr25:294180..297457 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO25G01060.1 vs.
Match: EWM21604.1 (hypothetical protein Naga_100012g31 [Nannochloropsis gaditana])

HSP 1 Score: 365.5 bits (937), Expect = 1.500e-97
Identity = 187/254 (73.62%), Postives = 210/254 (82.68%), Query Frame = 0

Query:   40 MPTTGAAAANSAITTPSEKHWPFHLFLVDLFLSSAFLTAGFYHVKTDEMSPKRLAWLLSAFSSFITASLSLSALYQLFEQAWVIENVLFADDRLSRFTATFFIAFLMLDLGFGMRYYPSQVQVLSGWVHHIFYLGVLAWALISHFTLGFCLFLPLEIPTFILAVGSLYPQRRSDWLFGLTFFITRICYHLLLFLLVREIKDPRLPLWVVVAVTFWLHMYWFVMWAKGWARRRRKSGKAAAVGGSEMEFVRDGRG 294
            MP   A A   ++T  S   WP  LF+ DL LSSAFLTAGF+ VKT +M+PKRLAWLLSAFSSFITASLS+SALYQLF Q+WVIENVLFADDRLSRFTATFFIAFL+LDL  GMRYYPSQ+ +LSGWVHH FYLGVLAWAL SHF+LGFCLFLPLEIPTFILAVGS+YPQRRSDWLFG+TF ITRICYHL LF+LVREIKDPRLP+WVV+AVTF LH+YWF +W K + RR+   GK     G + E   DG+G
Sbjct:   31 MPGVFATAVIGSMTPSSSDRWPPQLFVADLLLSSAFLTAGFFWVKTPDMTPKRLAWLLSAFSSFITASLSMSALYQLFAQSWVIENVLFADDRLSRFTATFFIAFLILDLALGMRYYPSQIHLLSGWVHHCFYLGVLAWALHSHFSLGFCLFLPLEIPTFILAVGSIYPQRRSDWLFGMTFLITRICYHLWLFVLVREIKDPRLPVWVVIAVTFCLHIYWFGLWWKSY-RRKYLLGK-----GGKKEGAMDGKG 278

The following BLAST results are available for this feature:

BLAST of NO25G01060.1 vs.

BLAST of NO25G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21604.1	1.500e-97	73.62	hypothetical protein Naga_100012g31 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO25G01060	NO25G01060	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO25G01060.1	NO25G01060.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO25G01060.1.cds1	NO25G01060.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G01060.1.cds2	NO25G01060.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr25:294180..297457-
coding sequence from alignment at chr25:294180..297457-

mRNA sequence

>NO25G01060.1 ID=NO25G01060.1|Name=NO25G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2962bp
TCCAAACCACGTGTTTCTCCACTCCCGCGCTTCACTCCCCTCTCTCTGCC
GTCGTTCCGCACCCGGTTCTCTTCTTTAAACATCCAACTTCCTCTCCTTT
ACTCCTTCCACCGATTCCCACACGTTAAGCACCGTACAAACATGGTCATG
GGCTCGTCCGATGACCGCGTCTGCTTCGCCTGGTAAGACGTTTTATTACC
CTTGCATCGCCCACAAGTGAAGGAACCCCCAACATCCTCGATTCCCAGTT
TTGCACGAATCTTGTCCGCATTCTTATCCTGCCAATCCAACAAATTTGCT
TCGTACGCCAATGCCGCAGCAGCTTCGGCAGCTTGTCGATGCTCTTCCGG
CTGCATGTCTTCAGGCTTCATTCCAACCAACGTCAACGGACGCAAATCAC
CCAACACCACCCTCAAGCGCAAGTGCTCATTAGTGTCCAAATTATACTTC
AAAGAGCGCGCTTTATCACCGTATTGTTTGCTGGCGTTTCGGTAATCCGC
GACATCTTGCATGGCTTGTTCAATGTCCACCGCCACCCGCGCGGCCCGAG
ACGCGTCTTCTTGTCCTTCGGGGTACTTGAGGAATAGCGCGAGGAAGAGA
TTCGCAATCTTGAGACGGGCTGGAGGCAAGTCCAAAGCAGCTGCTTCGGA
TTGGGCAAGGTAGGAGATGACTGTGGGAGGGCCGGCAGGAGGTTGTGATG
ATGCTGGTGGGGCAGCCGCGGAAGAAGAGGATGAGGACACAGCGCTGCCA
GATATGGCCTTCCGTGTGCCACTATCGTTGCTGCTAGTGTCGGCGGCGAC
GCTGCCTGCGGAACCGATGGAATGTGACTCGAGGAGACCTCCCCCATTGT
TGTTGCTGCTGCTGCTACTGCTGGCCCCATCCCTTCCCCCTATCCCTGCG
GGAGACGCCACCACTTTCTTCCACTTCTTCAGCAGCAACCCCGCCCGTTC
ATTCACGGCATCGAAAATCCCCGCCTCCGCCTTGACCGCCTTGCACTTCT
TGACGGCAAACCCGGCCTTGCTCAGCTTCAGCAGGTCGACGGTCATATCG
ATTTCCTCCAGATCGCCCAGTAAGTCTTGCGCTCGAGCTGCATCCAGGTG
CGAAGGGTCGCAGACTTTCTCCAGTTTGACGGCCAGGTCCGTGACCAGGT
CAGTCAGCTTGGAAGATAACATTGGTGGTTTCGAGATGGTGTGAGCGCTG
CCTGTTGAACGTGAAGGGAGGCAGAAGGGAGACGGTGTGGATTAATTTTA
ACAATCGCACAGCGGACGAAGCGGCGGCTCGCGTCCATGCAAAGAAAGCC
CTTGCTTGTAGTGAGGGGTGAGTGTGGTGTGGTGGGAGAGCGTGTTAATA
AAAAAACACCGTCAAGACACTGATCACCGATGCACGAGGTCTCGTGCGAG
ACCCAATCAAGCGAGTCTCTCATCGGATGAATAGTTCCTGAGGTCGAAAC
CCCGCCTCGCTCTTCACATGACCAACGCACGGCTACCCACATTCGGAGCA
AACTTAACCTGACCCATGCAAGGCTTTCATGCGCTCTTCCAACCAGTAAG
ACAGGAGCAGGGTTTTCGCATTCTCAGCCTCCTAGCTGGAGCCTGCCTCA
AGGCACTGGCGCCGTGCGATAGGCGATCATGACGTCGTAGGCGGGAAAGG
ACATGGTCCATGTCGGTGTGCGGACTAGTACAAGAACAACCTACACACAC
GTTTTACAAACAAGCATCATGCCGATGGCCAGGAAAACCAAAGCCTTGCA
TGTATTCAGTGCCTTTGCTTGTATTGCGGCCCGTTTTTGAGTCATACACT
CGTCGTACATCTCTGCGCAAGCAACGACAGAATTTAGATTCAGCTCTGAT
TCTCCACCCTTGCCACCACTCACCAACACCTTTAATCCGTCCTACACGCT
CACAGAGTACGCTTAAAAAGACACAGGGCAATCCGCAGGAGCCGCAGGAG
AGAGAGAGGCGGCAGGTAGCCCAGCCTTTCTATGACATCCTTCACCTCGT
CCCCCTCCTCCGGTCCATCCTTGCGTGCGCCCCTCCTTCGGTCCATCTTC
AGCACCGGTTTCCTCGGCCTGGCCACCACTAGCATTGTCATGCTCCTTAT
GCCAACCACAGGAGCTGCTGCTGCCAATTCTGCTATAACCACACCATCAG
AAAAGCACTGGCCCTTCCATCTCTTCCTCGTAGACCTTTTCTTATCCTCC
GCCTTTCTGACCGCAGGGTTTTACCACGTCAAGACCGATGAGATGTCCCC
CAAGCGCCTAGCCTGGTTGTTGAGTGCATTCAGTAGCTTCATTACTGCCT
CGTTGAGCTTATCGGCGTTGTATCAATTATTTGAGCAGGCATGGGTGATA
GAGAATGTGCTGTTCGCAGACGATCGACTCAGTCGCTTTACAGCCACTTT
CTTCATTGCTTTTCTGATGCTTGACTTAGGGTTTGGCATGAGATATTACC
CTTCTCAAGTCCAGGTTTTGAGTGGTTGGGTGCACCACATATTCTACTTG
GGAGTGCTGGCATGGGCACTGATCTCTCACTTCACCCTGGGCTTCTGCTT
GTTTTTGCCCTTGGAAATCCCGACCTTTATTCTCGCGGTGGGAAGTCTGT
ACCCGCAACGGAGGAGCGACTGGTTGTTTGGATTAACCTTCTTTATCACA
CGGATATGCTACCACTTGTTGTTGTTCTTATTGGTCAGGGAGATTAAGGA
CCCCCGGTTGCCGTTGTGGGTTGTGGTGGCGGTGACGTTTTGGTTGCACA
TGTACTGGTTTGTGATGTGGGCCAAGGGCTGGGCGAGGAGGAGGAGGAAA
TCGGGGAAGGCAGCAGCGGTGGGAGGCTCAGAGATGGAATTTGTGAGGGA
TGGGAGGGGAGATATTAAATCATCGTAAGGGAAAAAGGAGCGTGTGGGGG
AGGGCGTGTGACTATAGAGAGGAGGAGGCAAGAGAGAGAGGGGAGGGAGG
GAGGGATTCTCT

protein sequence of NO25G01060.1

>NO25G01060.1-protein ID=NO25G01060.1-protein|Name=NO25G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MTSFTSSPSSGPSLRAPLLRSIFSTGFLGLATTSIVMLLMPTTGAAAANS
AITTPSEKHWPFHLFLVDLFLSSAFLTAGFYHVKTDEMSPKRLAWLLSAF
SSFITASLSLSALYQLFEQAWVIENVLFADDRLSRFTATFFIAFLMLDLG
FGMRYYPSQVQVLSGWVHHIFYLGVLAWALISHFTLGFCLFLPLEIPTFI
LAVGSLYPQRRSDWLFGLTFFITRICYHLLLFLLVREIKDPRLPLWVVVA
VTFWLHMYWFVMWAKGWARRRRKSGKAAAVGGSEMEFVRDGRGDIKSS*

mRNA from alignment at chr25:294180..297457-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO25G01060.1 ID=NO25G01060.1|Name=NO25G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=3278bp|location=Sequence derived from alignment at chr25:294180..297457- (Nannochloropsis oceanica)
TCCAAACCACGTGTTTCTCCACTCCCGCGCTTCACTCCCCTCTCTCTGCC
GTCGTTCCGCACCCGGTTCTCTTCTTTAAACATCCAACTTCCTCTCCTTT
ACTCCTTCCACCGATTCCCACACGTTAAGCACCGTACAAACATGGTCATG
GGCTCGTCCGATGACCGCGTCTGCTTCGCCTGGTAAGACGTTTTATTACC
CTTGCATCGCCCACAAGTGAAGGAACCCCCAACATCCTCGATTCCCAGTT
TTGCACGAATCTTGTCCGCATTCTTATCCTGCCAATCCAACAAATTTGCT
TCGTACGCCAATGCCGCAGCAGCTTCGGCAGCTTGTCGATGCTCTTCCGG
CTGCATGTCTTCAGGCTTCATTCCAACCAACGTCAACGGACGCAAATCAC
CCAACACCACCCTCAAGCGCAAGTGCTCATTAGTGTCCAAATTATACTTC
AAAGAGCGCGCTTTATCACCGTATTGTTTGCTGGCGTTTCGGTAATCCGC
GACATCTTGCATGGCTTGTTCAATGTCCACCGCCACCCGCGCGGCCCGAG
ACGCGTCTTCTTGTCCTTCGGGGTACTTGAGGAATAGCGCGAGGAAGAGA
TTCGCAATCTTGAGACGGGCTGGAGGCAAGTCCAAAGCAGCTGCTTCGGA
TTGGGCAAGGTAGGAGATGACTGTGGGAGGGCCGGCAGGAGGTTGTGATG
ATGCTGGTGGGGCAGCCGCGGAAGAAGAGGATGAGGACACAGCGCTGCCA
GATATGGCCTTCCGTGTGCCACTATCGTTGCTGCTAGTGTCGGCGGCGAC
GCTGCCTGCGGAACCGATGGAATGTGACTCGAGGAGACCTCCCCCATTGT
TGTTGCTGCTGCTGCTACTGCTGGCCCCATCCCTTCCCCCTATCCCTGCG
GGAGACGCCACCACTTTCTTCCACTTCTTCAGCAGCAACCCCGCCCGTTC
ATTCACGGCATCGAAAATCCCCGCCTCCGCCTTGACCGCCTTGCACTTCT
TGACGGCAAACCCGGCCTTGCTCAGCTTCAGCAGGTCGACGGTCATATCG
ATTTCCTCCAGATCGCCCAGTAAGTCTTGCGCTCGAGCTGCATCCAGGTG
CGAAGGGTCGCAGACTTTCTCCAGTTTGACGGCCAGGTCCGTGACCAGGT
CAGTCAGCTTGGAAGATAACATTGGTGGTTTCGAGATGGTGTGAGCGCTG
CCTGTTGAACGTGAAGGGAGGCAGAAGGGAGACGGTGTGGATTAATTTTA
ACAATCGCACAGCGGACGAAGCGGCGGCTCGCGTCCATGCAAAGAAAGCC
CTTGCTTGTAGTGAGGGGTGAGTGTGGTGTGGTGGGAGAGCGTGTTAATA
AAAAAACACCGTCAAGACACTGATCACCGATGCACGAGGTCTCGTGCGAG
ACCCAATCAAGCGAGTCTCTCATCGGATGAATAGTTCCTGAGGTCGAAAC
CCCGCCTCGCTCTTCACATGACCAACGCACGGCTACCCACATTCGGAGCA
AACTTAACCTGACCCATGCAAGGCTTTCATGCGCTCTTCCAACCAGTAAG
ACAGGAGCAGGGTTTTCGCATTCTCAGCCTCCTAGCTGGAGCCTGCCTCA
AGGCACTGGCGCCGTGCGATAGGCGATCATGACGTCGTAGGCGGGAAAGG
ACATGGTCCATGTCGGTGTGCGGACTAGTACAAGAACAACCTACACACAC
GTTTTACAAACAAGCATCATGCCGATGGCCAGGAAAACCAAAGCCTTGCA
TGTATTCAGTGCCTTTGCTTGTATTGCGGCCCGTTTTTGAGTCATACACT
CGTCGTACATCTCTGCGCAAGCAACGACAGAATTTAGATTCAGCTCTGAT
TCTCCACCCTTGCCACCACTCACCAACACCTTTAATCCGTCCTACACGCT
CACAGAGTACGCTTAAAAAGACACAGGGCAATCCGCAGGAGCCGCAGGAG
AGAGAGAGGCGGCAGGTAGCCCAGCCTTTCTATGACATCCTTCACCTCGT
CCCCCTCCTCCGGTCCATCCTTGCGTGCGCCCCTCCTTCGGTCCATCTTC
AGCACCGGTTTCCTCGGCCTGGCCACCACTAGCATTGTCATGCTCCTTAT
GCCAACCACAGGAGCTGCTGCTGCCAATTCTGCTATAACCACACCATCAG
AAAAGCACTGGCCCTTCCATCTCTTCCTCGTAGACCTTTTCTTATCCTCC
GCCTTTCTGACCGCAGGGTTTTACCACGTCAAGACCGATGAGATGTCCCC
CAAGCGCCTAGCCTGGTTGTTGAGTGCATTCAGTAGCTTCATTACTGCCT
CGTTGAGCTTATCGGCGTTGTATCAATTATTTGAGCAGGCATGGGTGATA
GAGAATGTGCTGTTCGCAGACGATCGACTCAGTCGCTTTACAGCCACTTT
CTTCATTGCTTTTCTGATGCTTGACTTAGGGTTTGGCATGAGGTATGTAC
TTAGGAGAGAAGGGAGGAGGGATTGGATGGATGGAGGGTGATATGGACGA
TAGCTTGTACAGTGTCAGGTCTCCGTTTCAACTCAACGCCGTGGCCCAGG
GCCTCTTATTCCCTCACCAACCCCACCCCTCCCTCCCCTTTCTCCCCTCC
ACGTATGAAATCCCTGTGAAATTCATCTCTGAAGTGATAAGGTGCACCAT
AGACCTCTTGCTTCACCCTGGGCCTCGGTCTTTTTTCTCGCCCTTCCCTC
TCTCCTGCCCTCCCTCCGATCCACCCTCCCTCCCTTCCTCTCTCCCTCCC
TTCCACAGATATTACCCTTCTCAAGTCCAGGTTTTGAGTGGTTGGGTGCA
CCACATATTCTACTTGGGAGTGCTGGCATGGGCACTGATCTCTCACTTCA
CCCTGGGCTTCTGCTTGTTTTTGCCCTTGGAAATCCCGACCTTTATTCTC
GCGGTGGGAAGTCTGTACCCGCAACGGAGGAGCGACTGGTTGTTTGGATT
AACCTTCTTTATCACACGGATATGCTACCACTTGTTGTTGTTCTTATTGG
TCAGGGAGATTAAGGACCCCCGGTTGCCGTTGTGGGTTGTGGTGGCGGTG
ACGTTTTGGTTGCACATGTACTGGTTTGTGATGTGGGCCAAGGGCTGGGC
GAGGAGGAGGAGGAAATCGGGGAAGGCAGCAGCGGTGGGAGGCTCAGAGA
TGGAATTTGTGAGGGATGGGAGGGGAGATATTAAATCATCGTAAGGGAAA
AAGGAGCGTGTGGGGGAGGGCGTGTGACTATAGAGAGGAGGAGGCAAGAG
AGAGAGGGGAGGGAGGGAGGGATTCTCT

Coding sequence (CDS) from alignment at chr25:294180..297457-

>NO25G01060.1 ID=NO25G01060.1|Name=NO25G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr25:294180..297457- (Nannochloropsis oceanica)
ATGACATCCTTCACCTCGTCCCCCTCCTCCGGTCCATCCTTGCGTGCGCC
CCTCCTTCGGTCCATCTTCAGCACCGGTTTCCTCGGCCTGGCCACCACTA
GCATTGTCATGCTCCTTATGCCAACCACAGGAGCTGCTGCTGCCAATTCT
GCTATAACCACACCATCAGAAAAGCACTGGCCCTTCCATCTCTTCCTCGT
AGACCTTTTCTTATCCTCCGCCTTTCTGACCGCAGGGTTTTACCACGTCA
AGACCGATGAGATGTCCCCCAAGCGCCTAGCCTGGTTGTTGAGTGCATTC
AGTAGCTTCATTACTGCCTCGTTGAGCTTATCGGCGTTGTATCAATTATT
TGAGCAGGCATGGGTGATAGAGAATGTGCTGTTCGCAGACGATCGACTCA
GTCGCTTTACAGCCACTTTCTTCATTGCTTTTCTGATGCTTGACTTAGGG
TTTGGCATGAGATATTACCCTTCTCAAGTCCAGGTTTTGAGTGGTTGGGT
GCACCACATATTCTACTTGGGAGTGCTGGCATGGGCACTGATCTCTCACT
TCACCCTGGGCTTCTGCTTGTTTTTGCCCTTGGAAATCCCGACCTTTATT
CTCGCGGTGGGAAGTCTGTACCCGCAACGGAGGAGCGACTGGTTGTTTGG
ATTAACCTTCTTTATCACACGGATATGCTACCACTTGTTGTTGTTCTTAT
TGGTCAGGGAGATTAAGGACCCCCGGTTGCCGTTGTGGGTTGTGGTGGCG
GTGACGTTTTGGTTGCACATGTACTGGTTTGTGATGTGGGCCAAGGGCTG
GGCGAGGAGGAGGAGGAAATCGGGGAAGGCAGCAGCGGTGGGAGGCTCAG
AGATGGAATTTGTGAGGGATGGGAGGGGAGATATTAAATCATCGTAA

Synonyms

Publications