NO25G00930.1, NO25G00930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00930.1
Unique NameNO25G00930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1227
Alignment locationchr25:264188..265414 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:264188..265414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00930.1 vs.
Match: EWM21637.1 (hypothetical protein Naga_100012g41 [Nannochloropsis gaditana])

HSP 1 Score: 558.5 bits (1438), Expect = 1.700e-155
Identity = 307/412 (74.51%), Postives = 345/412 (83.74%), Query Frame = 0 
Query:    3 SATSSSPSLASKAMPLLLLSLSATPILSFFQSSSSISSVTRLTSNGLQLPFRP-------TGRRAAVVMMSDLDRAAKLREEAAKLEQDLAAIQALRPKPVVTEESPAAPVARYLSFEQIQEEVTKAMSSSAVVDATLKQLKASGVLSKFESISAKGLRRYSAEQFEQTTGFPPQDVESGGTQDDLKWALGAVMAASTVVVIGASFLGGFVGTLLVYLFLLIPITFIGVGSVAPGVISVLVVLVNNLLDGKQAERRATHQAARFLSGYLLGLPIESVKTEGEGGTTFIKFFDTVDGNFRDLGAEGASGPGPEARKKFSQDDILAHAVLAISGSVAERMEYGKVIDRQADFLYLVALMDLVRPALRAGQKNDLVLYSALTAHKILGANKSKLERLTEKVAAKAPLAELVAVVE 408
            S   ++ S  + AM L+ L L+ TP ++FF +      V R    G   PFRP       + RRAAVVMMSDLDRAAKLR+EA KLEQ+L A+QA RPKPVVTEE PA P  RYLSFEQ++ EV +AM+SSAVVD  LKQLK SG L+KFES SAKG RRYSAEQFEQ TGFPPQDVESGGTQDDLKWALGAVMAAS++ V+G  FLGGF GTLLVYLFLLIPITFIG+GSVAPGVISV VVLV+NLLDGK AER+ THQAARFL+GYLLGLPIESVKT+ EGGTTFIK++DT+DGNF+DLGA+ A+GPGPE RKKF Q+DIL HAVLAI+GSVAERMEYGKVIDRQADFLYLVALMDLVRP+LRAGQKNDLVLYSALTAHK+L ANK KLERL EK+AAKA LAE+VAV+E
Sbjct:   26 SIMRTARSCLTLAMSLVSLVLTTTPAMAFFNAG-----VCR--QFGTLQPFRPPQPTLSVSARRAAVVMMSDLDRAAKLRQEAEKLEQELKAVQASRPKPVVTEEKPAGPTPRYLSFEQLKAEVEQAMASSAVVDTALKQLKESGALTKFESGSAKGFRRYSAEQFEQATGFPPQDVESGGTQDDLKWALGAVMAASSLAVVGGGFLGGFAGTLLVYLFLLIPITFIGIGSVAPGVISVFVVLVSNLLDGKAAERKTTHQAARFLTGYLLGLPIESVKTDAEGGTTFIKYYDTMDGNFKDLGAQAAAGPGPEPRKKFGQEDILGHAVLAIAGSVAERMEYGKVIDRQADFLYLVALMDLVRPSLRAGQKNDLVLYSALTAHKLLTANKGKLERLAEKMAAKASLAEIVAVME 430
The following BLAST results are available for this feature:
BLAST of NO25G00930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21637.11.700e-15574.51hypothetical protein Naga_100012g41 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00930NO25G00930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00930.1NO25G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00930.1.cds1NO25G00930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00930.1 ID=NO25G00930.1|Name=NO25G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp
ATGCGATCCGCCACCTCTTCGTCTCCCTCCCTTGCAAGCAAGGCTATGCC
CTTGCTCCTCCTCAGTTTGTCCGCCACGCCCATTCTATCCTTTTTCCAAT
CTAGCAGCAGCATCAGCAGCGTGACCAGGCTTACCAGCAATGGGCTCCAA
TTACCCTTCCGTCCCACGGGCCGCCGTGCTGCCGTGGTGATGATGAGCGA
CTTAGACCGGGCTGCGAAGCTCAGAGAAGAAGCTGCGAAACTCGAGCAGG
ACCTTGCGGCCATTCAGGCGTTGAGACCCAAGCCTGTTGTGACGGAGGAA
AGCCCGGCAGCCCCCGTAGCCCGTTATTTGTCCTTTGAGCAAATCCAGGA
GGAAGTGACCAAGGCCATGTCCTCGAGTGCAGTAGTGGACGCGACTCTGA
AGCAATTGAAGGCCTCGGGCGTCCTATCAAAATTCGAGAGCATCAGTGCA
AAGGGATTGAGGCGGTACAGTGCCGAGCAATTTGAACAAACGACAGGATT
TCCACCTCAAGACGTGGAGAGCGGTGGGACGCAGGATGACTTGAAATGGG
CGTTGGGGGCAGTGATGGCGGCCAGTACGGTCGTGGTGATTGGTGCGAGT
TTCTTGGGAGGATTTGTGGGCACATTGCTTGTGTATCTGTTTTTGTTGAT
TCCTATCACCTTCATTGGGGTTGGTTCCGTCGCGCCGGGTGTCATTTCTG
TCCTTGTGGTGTTGGTGAACAACCTCCTGGATGGGAAGCAAGCGGAGCGG
AGAGCGACGCACCAAGCAGCAAGGTTTTTGAGTGGCTACTTGCTTGGACT
GCCCATTGAGAGCGTCAAGACGGAGGGAGAGGGAGGGACTACGTTCATCA
AGTTCTTTGACACGGTCGATGGGAATTTCAGGGACCTCGGTGCAGAAGGA
GCGTCAGGGCCAGGGCCAGAGGCAAGGAAGAAGTTCAGCCAGGACGATAT
TTTAGCCCATGCGGTATTGGCGATCAGCGGGTCCGTGGCGGAGAGGATGG
AGTACGGAAAGGTGATTGACCGACAGGCGGACTTCCTCTACCTTGTCGCA
TTGATGGACCTGGTCCGGCCGGCGTTGAGGGCGGGGCAGAAGAATGACCT
GGTGTTGTATTCGGCGCTGACGGCCCATAAAATCTTGGGTGCGAACAAGA
GTAAACTGGAGCGATTGACGGAGAAGGTGGCTGCGAAGGCACCGCTGGCT
GAGCTCGTAGCCGTCGTGGAGGGATAG
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protein sequence of NO25G00930.1

>NO25G00930.1-protein ID=NO25G00930.1-protein|Name=NO25G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MRSATSSSPSLASKAMPLLLLSLSATPILSFFQSSSSISSVTRLTSNGLQ
LPFRPTGRRAAVVMMSDLDRAAKLREEAAKLEQDLAAIQALRPKPVVTEE
SPAAPVARYLSFEQIQEEVTKAMSSSAVVDATLKQLKASGVLSKFESISA
KGLRRYSAEQFEQTTGFPPQDVESGGTQDDLKWALGAVMAASTVVVIGAS
FLGGFVGTLLVYLFLLIPITFIGVGSVAPGVISVLVVLVNNLLDGKQAER
RATHQAARFLSGYLLGLPIESVKTEGEGGTTFIKFFDTVDGNFRDLGAEG
ASGPGPEARKKFSQDDILAHAVLAISGSVAERMEYGKVIDRQADFLYLVA
LMDLVRPALRAGQKNDLVLYSALTAHKILGANKSKLERLTEKVAAKAPLA
ELVAVVEG*
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mRNA from alignment at chr25:264188..265414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00930.1 ID=NO25G00930.1|Name=NO25G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp|location=Sequence derived from alignment at chr25:264188..265414+ (Nannochloropsis oceanica)
ATGCGATCCGCCACCTCTTCGTCTCCCTCCCTTGCAAGCAAGGCTATGCC
CTTGCTCCTCCTCAGTTTGTCCGCCACGCCCATTCTATCCTTTTTCCAAT
CTAGCAGCAGCATCAGCAGCGTGACCAGGCTTACCAGCAATGGGCTCCAA
TTACCCTTCCGTCCCACGGGCCGCCGTGCTGCCGTGGTGATGATGAGCGA
CTTAGACCGGGCTGCGAAGCTCAGAGAAGAAGCTGCGAAACTCGAGCAGG
ACCTTGCGGCCATTCAGGCGTTGAGACCCAAGCCTGTTGTGACGGAGGAA
AGCCCGGCAGCCCCCGTAGCCCGTTATTTGTCCTTTGAGCAAATCCAGGA
GGAAGTGACCAAGGCCATGTCCTCGAGTGCAGTAGTGGACGCGACTCTGA
AGCAATTGAAGGCCTCGGGCGTCCTATCAAAATTCGAGAGCATCAGTGCA
AAGGGATTGAGGCGGTACAGTGCCGAGCAATTTGAACAAACGACAGGATT
TCCACCTCAAGACGTGGAGAGCGGTGGGACGCAGGATGACTTGAAATGGG
CGTTGGGGGCAGTGATGGCGGCCAGTACGGTCGTGGTGATTGGTGCGAGT
TTCTTGGGAGGATTTGTGGGCACATTGCTTGTGTATCTGTTTTTGTTGAT
TCCTATCACCTTCATTGGGGTTGGTTCCGTCGCGCCGGGTGTCATTTCTG
TCCTTGTGGTGTTGGTGAACAACCTCCTGGATGGGAAGCAAGCGGAGCGG
AGAGCGACGCACCAAGCAGCAAGGTTTTTGAGTGGCTACTTGCTTGGACT
GCCCATTGAGAGCGTCAAGACGGAGGGAGAGGGAGGGACTACGTTCATCA
AGTTCTTTGACACGGTCGATGGGAATTTCAGGGACCTCGGTGCAGAAGGA
GCGTCAGGGCCAGGGCCAGAGGCAAGGAAGAAGTTCAGCCAGGACGATAT
TTTAGCCCATGCGGTATTGGCGATCAGCGGGTCCGTGGCGGAGAGGATGG
AGTACGGAAAGGTGATTGACCGACAGGCGGACTTCCTCTACCTTGTCGCA
TTGATGGACCTGGTCCGGCCGGCGTTGAGGGCGGGGCAGAAGAATGACCT
GGTGTTGTATTCGGCGCTGACGGCCCATAAAATCTTGGGTGCGAACAAGA
GTAAACTGGAGCGATTGACGGAGAAGGTGGCTGCGAAGGCACCGCTGGCT
GAGCTCGTAGCCGTCGTGGAGGGATAG
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Coding sequence (CDS) from alignment at chr25:264188..265414+

>NO25G00930.1 ID=NO25G00930.1|Name=NO25G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr25:264188..265414+ (Nannochloropsis oceanica)
ATGCGATCCGCCACCTCTTCGTCTCCCTCCCTTGCAAGCAAGGCTATGCC
CTTGCTCCTCCTCAGTTTGTCCGCCACGCCCATTCTATCCTTTTTCCAAT
CTAGCAGCAGCATCAGCAGCGTGACCAGGCTTACCAGCAATGGGCTCCAA
TTACCCTTCCGTCCCACGGGCCGCCGTGCTGCCGTGGTGATGATGAGCGA
CTTAGACCGGGCTGCGAAGCTCAGAGAAGAAGCTGCGAAACTCGAGCAGG
ACCTTGCGGCCATTCAGGCGTTGAGACCCAAGCCTGTTGTGACGGAGGAA
AGCCCGGCAGCCCCCGTAGCCCGTTATTTGTCCTTTGAGCAAATCCAGGA
GGAAGTGACCAAGGCCATGTCCTCGAGTGCAGTAGTGGACGCGACTCTGA
AGCAATTGAAGGCCTCGGGCGTCCTATCAAAATTCGAGAGCATCAGTGCA
AAGGGATTGAGGCGGTACAGTGCCGAGCAATTTGAACAAACGACAGGATT
TCCACCTCAAGACGTGGAGAGCGGTGGGACGCAGGATGACTTGAAATGGG
CGTTGGGGGCAGTGATGGCGGCCAGTACGGTCGTGGTGATTGGTGCGAGT
TTCTTGGGAGGATTTGTGGGCACATTGCTTGTGTATCTGTTTTTGTTGAT
TCCTATCACCTTCATTGGGGTTGGTTCCGTCGCGCCGGGTGTCATTTCTG
TCCTTGTGGTGTTGGTGAACAACCTCCTGGATGGGAAGCAAGCGGAGCGG
AGAGCGACGCACCAAGCAGCAAGGTTTTTGAGTGGCTACTTGCTTGGACT
GCCCATTGAGAGCGTCAAGACGGAGGGAGAGGGAGGGACTACGTTCATCA
AGTTCTTTGACACGGTCGATGGGAATTTCAGGGACCTCGGTGCAGAAGGA
GCGTCAGGGCCAGGGCCAGAGGCAAGGAAGAAGTTCAGCCAGGACGATAT
TTTAGCCCATGCGGTATTGGCGATCAGCGGGTCCGTGGCGGAGAGGATGG
AGTACGGAAAGGTGATTGACCGACAGGCGGACTTCCTCTACCTTGTCGCA
TTGATGGACCTGGTCCGGCCGGCGTTGAGGGCGGGGCAGAAGAATGACCT
GGTGTTGTATTCGGCGCTGACGGCCCATAAAATCTTGGGTGCGAACAAGA
GTAAACTGGAGCGATTGACGGAGAAGGTGGCTGCGAAGGCACCGCTGGCT
GAGCTCGTAGCCGTCGTGGAGGGATAG
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Synonyms
Publications