NO25G00810.1, NO25G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00810.1
Unique NameNO25G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length354
Alignment locationchr25:220856..221209 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:220856..221209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO25G00810.1 vs.
Match: AFB75403.1 (histone [Nannochloropsis sp. CCMP1779])

HSP 1 Score: 218.8 bits (556), Expect = 9.100e-54
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 118
            MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAKHAVSEGTKAVTKYTSSS 117
The following BLAST results are available for this feature:
BLAST of NO25G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
AFB75403.19.100e-54100.00histone [Nannochloropsis sp. CCMP1779][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00810NO25G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00810.1NO25G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00810.1.cds1NO25G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00810.1 ID=NO25G00810.1|Name=NO25G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=354bp
ATGGCCAAGACACCCTCCAAAAAGTCCGCCAAGGCCCCGAAGAAGGCCGG
CAAGGGCACCAAGAAGAAGACCCGCGTGGAGAGCTATGGCTCCTACATCT
ACAAGGTCCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGTGGC
GTGTCCATCTTGAACTCCTTCATCGGTGACATCTTCGACCGCCTCGCCAC
AGAGGCCGGCAAGCTGGCCCGCTACACCAAGAAGTCTACCCTCTCCTCCC
GCGAGGTGCAGACGGCAGTCCGCCTCACCCTCCCCGGTGAGCTGGCCAAG
CACGCTGTCTCCGAGGGCACCAAGGCCGTCACCAAGTACACCTCGTCCAG
CTAA
back to top

protein sequence of NO25G00810.1

>NO25G00810.1-protein ID=NO25G00810.1-protein|Name=NO25G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRG
VSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREVQTAVRLTLPGELAK
HAVSEGTKAVTKYTSSS*
back to top

mRNA from alignment at chr25:220856..221209+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00810.1 ID=NO25G00810.1|Name=NO25G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=354bp|location=Sequence derived from alignment at chr25:220856..221209+ (Nannochloropsis oceanica)
ATGGCCAAGACACCCTCCAAAAAGTCCGCCAAGGCCCCGAAGAAGGCCGG
CAAGGGCACCAAGAAGAAGACCCGCGTGGAGAGCTATGGCTCCTACATCT
ACAAGGTCCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGTGGC
GTGTCCATCTTGAACTCCTTCATCGGTGACATCTTCGACCGCCTCGCCAC
AGAGGCCGGCAAGCTGGCCCGCTACACCAAGAAGTCTACCCTCTCCTCCC
GCGAGGTGCAGACGGCAGTCCGCCTCACCCTCCCCGGTGAGCTGGCCAAG
CACGCTGTCTCCGAGGGCACCAAGGCCGTCACCAAGTACACCTCGTCCAG
CTAA
back to top

Coding sequence (CDS) from alignment at chr25:220856..221209+

>NO25G00810.1 ID=NO25G00810.1|Name=NO25G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at chr25:220856..221209+ (Nannochloropsis oceanica)
ATGGCCAAGACACCCTCCAAAAAGTCCGCCAAGGCCCCGAAGAAGGCCGG
CAAGGGCACCAAGAAGAAGACCCGCGTGGAGAGCTATGGCTCCTACATCT
ACAAGGTCCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGTGGC
GTGTCCATCTTGAACTCCTTCATCGGTGACATCTTCGACCGCCTCGCCAC
AGAGGCCGGCAAGCTGGCCCGCTACACCAAGAAGTCTACCCTCTCCTCCC
GCGAGGTGCAGACGGCAGTCCGCCTCACCCTCCCCGGTGAGCTGGCCAAG
CACGCTGTCTCCGAGGGCACCAAGGCCGTCACCAAGTACACCTCGTCCAG
CTAA
back to top
Synonyms
Publications