NO25G00740.1, NO25G00740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00740.1
Unique NameNO25G00740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1529
Alignment locationchr25:204890..206776 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:204890..206776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00740.1 vs.
Match: EWM21579.1 (2-amino-3-carboxymuconate-6-semialdehyde [Nannochloropsis gaditana])

HSP 1 Score: 508.8 bits (1309), Expect = 1.900e-140
Identity = 272/490 (55.51%), Postives = 331/490 (67.55%), Query Frame = 0 
Query:   16 PRPPPCPLHQHEHAAAFTSSPTTNRRQQHPYKTITEKPLFGKAIDVHTHLYLPGYMNLLRSRSEVPRVTHPPPGSPIEASERLLILPGEDVDATTASGRPIGREYWSIEEKLAFMDSHGIQASVLSPANPWLDFLPPSEALPLARELNDELHALCSSSSP--------SSLQRLYAFGFLPLHPSLLHHPSYGASVLIKEIERLASPPLNSTMRGVIIPAQGLDDPLMEGIYEACERLKLVLFVHPHYGLRGGGREGGKTGAFGHVLPLALGFPFETSLAVARLVLSGFLDRYPSLLLLLAHAGGTLPFLAGRLDSCVEHDVAFSSPAPCAADAAAAAGGGGDGTPIFPSSRFADGGGWREGGGGAIGRLERLPSFYLRRNFVYDSVIYHSAGLKGLRSFLREGGREGGREGGGAKVMWGTDHPFFPPVEREGDMEGGRKEGRLWASTMKNYEILWEE----VEGEGGMEEEEWREGVVWRNASEVLRIP 494
            PR PP       H     S      +  +PY+ I  K  FG  IDVHTHLYLPGYM+LLR R+EVPR+   PPGS  +A ERLLILPGED D +T+SGRPIGREYWS+E+KL+FMD HGIQ SVLSPANPWLDFLPP +AL +A++LNDELHA+CSSS P        + + R   FGFLPLHP  L   S     +++E+ERLA+PPL+STMRGVI+PAQ LD PLM+G+YEAC+RL LVLF+HPHYG+   G+     G +GHVLPLALGFPFETS+A ARL+LSG+LDRYP L +LLAH+GGTLPFLAGRLD CV HD A                             F  G G R+G     G+L+  PS YLRRNF +D+V+YH AG + LR+ L E G++        +VMWG+DHPFFPPV+   + EG R+  R W S MKNYEILW E     E + G +EE+WREGV+WRNAS++L IP
Sbjct:   40 PRQPPRKRSSPIHTTTLNSEAY---QSSNPYRAIRGKAAFGNTIDVHTHLYLPGYMDLLRRRAEVPRIIPAPPGSASDAPERLLILPGEDADESTSSGRPIGREYWSVEKKLSFMDVHGIQTSVLSPANPWLDFLPPLDALRVAQDLNDELHAICSSSYPAPPSFPSSAPVPRFLCFGFLPLHP--LFQSSQLLPAIVRELERLATPPLSSTMRGVILPAQHLDHPLMDGVYEACQRLGLVLFIHPHYGV---GKGSEVNGDYGHVLPLALGFPFETSVAAARLLLSGYLDRYPDLRVLLAHSGGTLPFLAGRLDCCVAHDPA-----------------------------FVWGRGGRKG-----GKLKHSPSLYLRRNFFFDNVVYHQAGCQCLRALLGEAGKD--------RVMWGSDHPFFPPVD-AAEGEGSRQ--RPWPSAMKNYEILWGEGTSTDEVKEGAKEEKWREGVLWRNASKLLCIP 476
The following BLAST results are available for this feature:
BLAST of NO25G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21579.11.900e-14055.512-amino-3-carboxymuconate-6-semialdehyde [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00740NO25G00740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00740.1NO25G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00740.1.cds1NO25G00740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00740.1.cds2NO25G00740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00740.1.cds3NO25G00740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00740.1 ID=NO25G00740.1|Name=NO25G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1529bp
TGAGTCGCCCCTCAAGCCTCGCCTTTGCCAGGCGGGGTAACGCAATGGCT
CGCCAGGGGGCAAGAGCAGGCACCACTCCCCCCATGTCCCCTCGTCCTCC
TCCTTGCCCTCTTCATCAACATGAACACGCCGCTGCCTTCACGTCCAGCC
CAACAACAAATCGGCGGCAACAGCACCCTTACAAGACCATCACCGAAAAA
CCTCTATTCGGCAAGGCTATCGACGTCCACACCCATCTCTATTTACCTGG
GTACATGAACCTCCTACGAAGCCGCAGTGAGGTGCCTCGTGTTACTCACC
CGCCACCAGGCAGTCCAATTGAAGCATCCGAACGCCTTTTGATCCTACCA
GGGGAAGATGTGGATGCCACCACGGCAAGTGGCCGGCCGATTGGAAGGGA
GTACTGGAGTATCGAGGAAAAGCTGGCGTTCATGGACTCTCACGGGATCC
AAGCCAGCGTCCTCTCCCCTGCCAATCCCTGGCTGGACTTCCTCCCTCCT
TCCGAAGCCCTCCCCCTCGCCCGAGAACTCAACGACGAGCTGCACGCACT
CTGCTCCTCCTCCTCCCCCTCCTCCTTGCAGCGACTGTACGCTTTCGGTT
TCCTCCCCCTCCATCCTTCCCTCCTCCACCATCCTTCCTACGGGGCTTCC
GTTCTGATCAAAGAAATTGAACGACTTGCTTCCCCTCCATTGAATAGTAC
TATGCGTGGTGTGATCATCCCAGCTCAAGGGCTTGACGACCCGTTAATGG
AGGGAATATACGAGGCCTGTGAACGACTAAAGCTCGTACTCTTCGTGCAC
CCTCACTATGGCCTCAGGGGAGGAGGGAGGGAGGGTGGGAAGACGGGCGC
CTTCGGTCACGTCCTCCCTCTTGCCCTCGGCTTCCCCTTTGAGACCTCCC
TCGCGGTCGCCCGCTTGGTCCTGTCGGGCTTTCTCGATCGATACCCCTCC
CTCCTCCTCCTCCTGGCCCATGCGGGGGGCACGCTACCGTTTCTTGCCGG
CCGGCTCGACAGTTGTGTGGAGCATGATGTCGCCTTCTCGTCCCCTGCTC
CTTGTGCTGCTGATGCGGCTGCCGCTGCTGGTGGTGGTGGTGATGGTACT
CCTATCTTCCCTTCCTCCCGGTTCGCAGATGGAGGGGGATGGAGGGAGGG
AGGAGGAGGGGCAATAGGGAGGCTGGAGCGTTTGCCTTCGTTTTACCTGC
GACGTAATTTTGTGTACGACAGTGTCATATACCACAGCGCGGGTTTGAAA
GGATTGAGGTCGTTTTTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGAGGGGCGAAGGTGATGTGGGGAACGGATCATCCGTTCTTTCCGCCGG
TGGAAAGGGAGGGGGACATGGAGGGAGGAAGGAAGGAGGGGAGGTTGTGG
GCATCGACTATGAAGAACTATGAGATATTGTGGGAGGAGGTAGAGGGGGA
GGGAGGGATGGAGGAAGAGGAGTGGAGGGAGGGGGTTGTGTGGCGGAATG
CGAGTGAGGTGTTAAGGATCCCGGTCTAG
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protein sequence of NO25G00740.1

>NO25G00740.1-protein ID=NO25G00740.1-protein|Name=NO25G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MARQGARAGTTPPMSPRPPPCPLHQHEHAAAFTSSPTTNRRQQHPYKTIT
EKPLFGKAIDVHTHLYLPGYMNLLRSRSEVPRVTHPPPGSPIEASERLLI
LPGEDVDATTASGRPIGREYWSIEEKLAFMDSHGIQASVLSPANPWLDFL
PPSEALPLARELNDELHALCSSSSPSSLQRLYAFGFLPLHPSLLHHPSYG
ASVLIKEIERLASPPLNSTMRGVIIPAQGLDDPLMEGIYEACERLKLVLF
VHPHYGLRGGGREGGKTGAFGHVLPLALGFPFETSLAVARLVLSGFLDRY
PSLLLLLAHAGGTLPFLAGRLDSCVEHDVAFSSPAPCAADAAAAAGGGGD
GTPIFPSSRFADGGGWREGGGGAIGRLERLPSFYLRRNFVYDSVIYHSAG
LKGLRSFLREGGREGGREGGGAKVMWGTDHPFFPPVEREGDMEGGRKEGR
LWASTMKNYEILWEEVEGEGGMEEEEWREGVVWRNASEVLRIPV*
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mRNA from alignment at chr25:204890..206776+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00740.1 ID=NO25G00740.1|Name=NO25G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at chr25:204890..206776+ (Nannochloropsis oceanica)
TGAGTCGCCCCTCAAGCCTCGCCTTTGCCAGGCGGGGTAACGCAATGGCT
CGCCAGGGGGCAAGAGCAGGCACCACTCCCCCCATGTCCCCTCGTCCTCC
TCCTTGCCCTCTTCATCAACATGAACACGCCGCTGCCTTCACGTCCAGCC
CAACAACAAATCGGCGGCAACAGCACCCTTACAAGACCATCACCGAAAAA
CCTCTATTCGGCAAGGCTATCGACGTCCACACCCATCTCTATTTACCTGG
GTACATGAACCTCCTACGAAGCCGCAGTGAGGTGCCTCGTGTTACTCACC
CGCCACCAGGCAGTCCAATTGAAGCATCCGAACGCCTTTTGATCCTACCA
GGGGAAGATGTGGATGCCACCACGGCAAGTGGCCGGCCGATTGGAAGGGA
GTACTGGAGTATCGAGGAAAAGCTGGCGTTCATGGACTCTCACGGTAAAT
TCGAAGGAAGATGAGGCATAAACTTATCCTCCCTTACATCCTTTCCTCCT
CATTCAAACGACGTGTATTCCAGTCAGCAGCCCCCCCCCCTGCAGTCCCT
TGCTGAACTACCTCATTCCTTTCACCGACATCAAACATTCCCTCCCTTCC
TCCTCCCTCCCTCCCTTCCTTCCTCCCTCTCTCTCTCCTCATCGCACTAC
AGGGATCCAAGCCAGCGTCCTCTCCCCTGCCAATCCCTGGCTGGACTTCC
TCCCTCCTTCCGAAGCCCTCCCCCTCGCCCGAGAACTCAACGACGAGCTG
CACGCACTCTGCTCCTCCTCCTCCCCCTCCTCCTTGCAGCGACTGTACGC
TTTCGGTTTCCTCCCCCTCCATCCTTCCCTCCTCCACCATCCTTCCTACG
GGGCTTCCGTTCTGATCAAAGAAATTGAACGACTTGCTTCCCCTCCATTG
AATAGTACTATGCGTGGTGTGATCATCCCAGCTCAAGGTGACGAGGGGGG
GAGGGAGGGAGGGAGGATGGGAGGTGTGACGTTGATTTATGTCTGTCCCA
TTTGTTTGTGGATGAAGAATATACCCACTCATTCCACTGTCCTCCTTCCC
ACCTTCCCACCCTTCCTCCCTCATTCCCTCGCCACAGGGCTTGACGACCC
GTTAATGGAGGGAATATACGAGGCCTGTGAACGACTAAAGCTCGTACTCT
TCGTGCACCCTCACTATGGCCTCAGGGGAGGAGGGAGGGAGGGTGGGAAG
ACGGGCGCCTTCGGTCACGTCCTCCCTCTTGCCCTCGGCTTCCCCTTTGA
GACCTCCCTCGCGGTCGCCCGCTTGGTCCTGTCGGGCTTTCTCGATCGAT
ACCCCTCCCTCCTCCTCCTCCTGGCCCATGCGGGGGGCACGCTACCGTTT
CTTGCCGGCCGGCTCGACAGTTGTGTGGAGCATGATGTCGCCTTCTCGTC
CCCTGCTCCTTGTGCTGCTGATGCGGCTGCCGCTGCTGGTGGTGGTGGTG
ATGGTACTCCTATCTTCCCTTCCTCCCGGTTCGCAGATGGAGGGGGATGG
AGGGAGGGAGGAGGAGGGGCAATAGGGAGGCTGGAGCGTTTGCCTTCGTT
TTACCTGCGACGTAATTTTGTGTACGACAGTGTCATATACCACAGCGCGG
GTTTGAAAGGATTGAGGTCGTTTTTGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGAGGGGCGAAGGTGATGTGGGGAACGGATCATCCGTTCTT
TCCGCCGGTGGAAAGGGAGGGGGACATGGAGGGAGGAAGGAAGGAGGGGA
GGTTGTGGGCATCGACTATGAAGAACTATGAGATATTGTGGGAGGAGGTA
GAGGGGGAGGGAGGGATGGAGGAAGAGGAGTGGAGGGAGGGGGTTGTGTG
GCGGAATGCGAGTGAGGTGTTAAGGATCCCGGTCTAG
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Coding sequence (CDS) from alignment at chr25:204890..206776+

>NO25G00740.1 ID=NO25G00740.1|Name=NO25G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at chr25:204890..206776+ (Nannochloropsis oceanica)
ATGGCTCGCCAGGGGGCAAGAGCAGGCACCACTCCCCCCATGTCCCCTCG
TCCTCCTCCTTGCCCTCTTCATCAACATGAACACGCCGCTGCCTTCACGT
CCAGCCCAACAACAAATCGGCGGCAACAGCACCCTTACAAGACCATCACC
GAAAAACCTCTATTCGGCAAGGCTATCGACGTCCACACCCATCTCTATTT
ACCTGGGTACATGAACCTCCTACGAAGCCGCAGTGAGGTGCCTCGTGTTA
CTCACCCGCCACCAGGCAGTCCAATTGAAGCATCCGAACGCCTTTTGATC
CTACCAGGGGAAGATGTGGATGCCACCACGGCAAGTGGCCGGCCGATTGG
AAGGGAGTACTGGAGTATCGAGGAAAAGCTGGCGTTCATGGACTCTCACG
GGATCCAAGCCAGCGTCCTCTCCCCTGCCAATCCCTGGCTGGACTTCCTC
CCTCCTTCCGAAGCCCTCCCCCTCGCCCGAGAACTCAACGACGAGCTGCA
CGCACTCTGCTCCTCCTCCTCCCCCTCCTCCTTGCAGCGACTGTACGCTT
TCGGTTTCCTCCCCCTCCATCCTTCCCTCCTCCACCATCCTTCCTACGGG
GCTTCCGTTCTGATCAAAGAAATTGAACGACTTGCTTCCCCTCCATTGAA
TAGTACTATGCGTGGTGTGATCATCCCAGCTCAAGGGCTTGACGACCCGT
TAATGGAGGGAATATACGAGGCCTGTGAACGACTAAAGCTCGTACTCTTC
GTGCACCCTCACTATGGCCTCAGGGGAGGAGGGAGGGAGGGTGGGAAGAC
GGGCGCCTTCGGTCACGTCCTCCCTCTTGCCCTCGGCTTCCCCTTTGAGA
CCTCCCTCGCGGTCGCCCGCTTGGTCCTGTCGGGCTTTCTCGATCGATAC
CCCTCCCTCCTCCTCCTCCTGGCCCATGCGGGGGGCACGCTACCGTTTCT
TGCCGGCCGGCTCGACAGTTGTGTGGAGCATGATGTCGCCTTCTCGTCCC
CTGCTCCTTGTGCTGCTGATGCGGCTGCCGCTGCTGGTGGTGGTGGTGAT
GGTACTCCTATCTTCCCTTCCTCCCGGTTCGCAGATGGAGGGGGATGGAG
GGAGGGAGGAGGAGGGGCAATAGGGAGGCTGGAGCGTTTGCCTTCGTTTT
ACCTGCGACGTAATTTTGTGTACGACAGTGTCATATACCACAGCGCGGGT
TTGAAAGGATTGAGGTCGTTTTTGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGAGGGGCGAAGGTGATGTGGGGAACGGATCATCCGTTCTTTC
CGCCGGTGGAAAGGGAGGGGGACATGGAGGGAGGAAGGAAGGAGGGGAGG
TTGTGGGCATCGACTATGAAGAACTATGAGATATTGTGGGAGGAGGTAGA
GGGGGAGGGAGGGATGGAGGAAGAGGAGTGGAGGGAGGGGGTTGTGTGGC
GGAATGCGAGTGAGGTGTTAAGGATCCCGGTCTAG
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Synonyms
Publications