NO25G00570.1, NO25G00570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00570.1
Unique NameNO25G00570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2215
Alignment locationchr25:162436..164786 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:162436..164786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00570.1 vs.
Match: EWM21636.1 (fibroblast growth factor intracellular binding protein [Nannochloropsis gaditana])

HSP 1 Score: 439.9 bits (1130), Expect = 1.500e-119
Identity = 315/717 (43.93%), Postives = 412/717 (57.46%), Query Frame = 0 
Query:    1 MDEEGFFDVCVSEPEPMEIDCFELWLEGPTLSQAARRRSNEMIDAVRLYHTHLHDNCSPSTSSSMSTTAAIAALMEDREVMQFVRASLADSFRVLDLLESSLYHPPSFLGHPFIQLPMPGRLLMIEMYYALDPYVAREIIWRKQSAKRIGKDLEEIKEATGVSLRSCRRQHDNWKRVYTILEEQRGFQCHVAHAVEQSFLLSPALACQYTVCIFLAYHKFVLAAPTYHYQLRQPSSTRLPYSSFKSSSIDYLSSSSSQPLYLQQQQQQQQQQQQQQQQQQQQQQQQNQQQLSHPFLQHP-NRTHALPFSKILFMSLAVLVFWVPELPCAITTISGNSSSEKGAQHQEQEEEEEEEEEEEEEEEELEEEEEEEDDEEESISNTSTSGWVFASLSHRLEAVNIGGGIGGHRGRQDSLLMSHLPTAATTEEKTVADVVRSMLEIADLIVEEEGE----GKEGGIEEAGGGVASSGQPQKSSSSNTTSIEQGQQQQQQGQQQQQQQQQQQQRDSSCSARPEEG----ARLLLQSRLRKTFGLELEKVLLVSLRDLSRFFNDTTVMEQYQAEVATYLLNQGENRGGGGGGPTAARRT--ENRRLLGNRWMVQAVERRFKAILRPLSAVGWGLSLQKELKDFFEDVLVKVTLPLRDLRLSRRDLCHLFTALINSFHSIPVLREGKSKSISQKRLNQYAVSWARFLSGMLLCILHTYPIWCLPS 707
            MDE+G FDVCV+EP+P+E++ F+LWL+G +   AARRR NE+   +R     +HD    S   S  T +     +++ EV++ VRASLAD FR+LDLLE  L+HPPSFLG PF+QLP   R+LM+E+YY+LDP V RE++WRK   KRIGKDLE+++ ATGVSLRSCRRQ DN +R+YT LE+QR FQCHVA  VE SF +S  LACQYTVC FL +H+FVL+ P+Y +   Q      P+S    +S+ + +S    P+                   +          L  P   H    T AL F  + FMSLA+L FWVP+    +    G  ++                E ++ +   L        D E   S T        SLS RL  V    G+ G R   D L     P       ++V++V   +  IAD++V E+ E    G + G+EE G G   +G    S  +  T                  ++      ++C   P EG    AR LLQ RLR  +G+ELEK LLV LR+LSR FND+T+++QYQA+VA  LL      G    G  A RR   +   L G R  ++AVERRF+AIL+PLSA+GWGLSL KEL+D FED+LVKVT PLRDL LSR+DLC+LF+ALI+SF  +P    GKSK + Q+R+ QYAVSWARFLSG+LLCILHTY  W LPS
Sbjct:   34 MDEDGCFDVCVAEPDPIEVNSFKLWLQGLSPESAARRRVNEIFSVLR---QSVHDKDEQSLRMSALTKSFAGLCVDESEVLRLVRASLADDFRLLDLLEGFLFHPPSFLGQPFVQLPRQERMLMLEVYYSLDPSVVRELLWRKPLGKRIGKDLEDVEGATGVSLRSCRRQFDNLRRIYTHLEDQRAFQCHVAVVVEGSFHISTVLACQYTVCSFLLFHRFVLSPPSYDHPQGQ------PHSHHHKASVAHPTSPKPSPV-------------------EPSSSLPPSPHLLPPSSSHGLEPTRALSFQDLEFMSLAILTFWVPDTSRTVMPDLGAKAT----------------EGQDSQRRSLPGACTPPLDLERRGSQT------LLSLSQRLGRV----GVAGRRRAGDILECGQAPVPRVGGARSVSEVAEVLSSIADVMVREDEEREHRGADEGLEECGKGKRETGTDCGSRDARDT-------------PALPPRRTSWAASATC---PPEGLHGRARGLLQCRLRCAYGMELEKELLVGLRELSRLFNDSTILDQYQAQVAIRLLQPVPEIGERALG-RAIRRAGGQGDALEGGRARLRAVERRFRAILQPLSALGWGLSLHKELRDLFEDMLVKVTAPLRDLNLSRQDLCNLFSALISSFPCLPAF-TGKSKGLPQRRIKQYAVSWARFLSGVLLCILHTYSTWHLPS 678
The following BLAST results are available for this feature:
BLAST of NO25G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21636.11.500e-11943.93fibroblast growth factor intracellular binding pro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00570NO25G00570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00570.1NO25G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00570.1.cds1NO25G00570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00570.1.cds2NO25G00570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00570.1 ID=NO25G00570.1|Name=NO25G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2215bp
ATGGATGAGGAAGGCTTCTTCGATGTGTGCGTCTCGGAACCTGAGCCCAT
GGAGATTGACTGCTTTGAGTTGTGGTTAGAGGGGCCAACCCTCTCGCAAG
CCGCACGACGACGCTCAAACGAAATGATTGATGCCGTCCGCCTCTACCAT
ACCCACCTTCATGACAACTGCAGCCCGTCCACGTCCTCATCCATGTCCAC
AACTGCAGCGATCGCCGCACTGATGGAGGACCGCGAAGTCATGCAATTTG
TGCGTGCGTCGTTGGCAGACAGCTTCCGCGTCCTTGATTTACTCGAGAGC
TCCTTGTACCACCCTCCCTCGTTTCTTGGCCACCCCTTTATCCAGCTGCC
CATGCCTGGCCGGCTGCTGATGATCGAAATGTATTATGCCTTAGACCCGT
ACGTCGCCCGGGAGATTATCTGGCGGAAGCAATCCGCAAAACGTATCGGC
AAGGACTTGGAAGAGATCAAGGAGGCGACGGGAGTGTCTTTGCGCAGCTG
TCGACGGCAACACGACAATTGGAAGCGGGTGTATACCATTCTGGAGGAGC
AGCGAGGATTTCAATGTCACGTGGCTCATGCGGTAGAGCAGTCCTTTTTG
CTTTCCCCCGCACTGGCGTGCCAGTACACGGTTTGCATATTCCTCGCCTA
TCATAAATTTGTGTTGGCTGCTCCCACCTACCATTACCAGCTTCGTCAAC
CGTCCTCGACACGGTTACCTTACTCATCCTTTAAGTCGTCTTCCATTGAC
TATCTCTCTTCCTCCTCCTCCCAGCCTCTGTATCTCCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGCAACAGAACCAACAGCAGCTTTCGCATCCTTTTCTCCAGCATCCAAAT
CGGACACACGCCCTTCCCTTTAGTAAAATACTATTCATGAGCTTGGCCGT
CCTCGTATTTTGGGTGCCCGAGTTGCCCTGCGCCATCACCACGATCAGCG
GGAACAGCAGCAGTGAGAAAGGTGCACAGCACCAGGAGCAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGGAGGAGGA
GGAGGAGGAGGAAGATGATGAGGAGGAAAGCATCAGCAATACCAGCACCA
GCGGCTGGGTGTTTGCGTCCTTGTCCCATCGGCTGGAGGCCGTGAATATT
GGTGGTGGTATTGGTGGGCATCGTGGAAGGCAGGACAGCCTTTTAATGAG
TCATCTCCCAACGGCGGCAACGACGGAGGAAAAGACAGTGGCAGACGTGG
TGCGGAGCATGCTGGAGATTGCCGACTTAATCGTGGAGGAGGAGGGAGAA
GGGAAAGAGGGAGGAATAGAAGAAGCAGGTGGTGGAGTTGCCAGCAGCGG
GCAGCCGCAGAAGAGCTCCAGCAGTAATACGACTAGCATCGAACAAGGGC
AGCAGCAGCAGCAGCAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCGAGATTCCTCATGCTCAGCCCGCCCAGAGGAAGGGGCTCGGCT
ACTATTGCAATCCCGTCTACGGAAAACCTTTGGGTTGGAGTTAGAGAAGG
TCTTGTTGGTGAGCTTGCGGGATCTATCTCGTTTTTTCAACGACACAACT
GTGATGGAGCAGTACCAGGCTGAGGTGGCCACCTACTTGCTTAATCAGGG
TGAAAACAGAGGAGGTGGAGGCGGAGGACCAACAGCAGCAAGAAGAACAG
AAAATAGGAGGTTGTTGGGGAATAGATGGATGGTCCAAGCTGTGGAACGT
CGGTTCAAGGCTATCTTACGGCCCTTGTCTGCAGTGGGGTGGGGACTGTC
TCTTCAGAAGGAGTTAAAAGACTTCTTTGAGGACGTTTTGGTGAAAGTGA
CTCTACCTTTGCGAGACCTAAGGCTATCGCGTCGTGATCTGTGTCATTTA
TTTACGGCGCTAATCAATAGCTTCCACTCGATCCCGGTGTTGAGGGAGGG
GAAGAGTAAGAGCATTTCGCAAAAGCGACTAAATCAGTATGCCGTTTCCT
GGGCGCGATTCCTAAGCGGAATGCTCCTGTGCATCCTCCACACTTACCCC
ATCTGGTGCCTACCCTCACCTTCGCCCATAATATCGACCGTGCTAAAAGC
CCAGGGGGATAGGAGTAAAAGATGAAATCAACATTTGCGAAAGAAAAAGC
ACACATGTACAGTCA
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protein sequence of NO25G00570.1

>NO25G00570.1-protein ID=NO25G00570.1-protein|Name=NO25G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=725bp
MDEEGFFDVCVSEPEPMEIDCFELWLEGPTLSQAARRRSNEMIDAVRLYH
THLHDNCSPSTSSSMSTTAAIAALMEDREVMQFVRASLADSFRVLDLLES
SLYHPPSFLGHPFIQLPMPGRLLMIEMYYALDPYVAREIIWRKQSAKRIG
KDLEEIKEATGVSLRSCRRQHDNWKRVYTILEEQRGFQCHVAHAVEQSFL
LSPALACQYTVCIFLAYHKFVLAAPTYHYQLRQPSSTRLPYSSFKSSSID
YLSSSSSQPLYLQQQQQQQQQQQQQQQQQQQQQQQQNQQQLSHPFLQHPN
RTHALPFSKILFMSLAVLVFWVPELPCAITTISGNSSSEKGAQHQEQEEE
EEEEEEEEEEEEELEEEEEEEDDEEESISNTSTSGWVFASLSHRLEAVNI
GGGIGGHRGRQDSLLMSHLPTAATTEEKTVADVVRSMLEIADLIVEEEGE
GKEGGIEEAGGGVASSGQPQKSSSSNTTSIEQGQQQQQQGQQQQQQQQQQ
QQRDSSCSARPEEGARLLLQSRLRKTFGLELEKVLLVSLRDLSRFFNDTT
VMEQYQAEVATYLLNQGENRGGGGGGPTAARRTENRRLLGNRWMVQAVER
RFKAILRPLSAVGWGLSLQKELKDFFEDVLVKVTLPLRDLRLSRRDLCHL
FTALINSFHSIPVLREGKSKSISQKRLNQYAVSWARFLSGMLLCILHTYP
IWCLPSPSPIISTVLKAQGDRSKR*
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mRNA from alignment at chr25:162436..164786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00570.1 ID=NO25G00570.1|Name=NO25G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2351bp|location=Sequence derived from alignment at chr25:162436..164786+ (Nannochloropsis oceanica)
ATGGATGAGGAAGGCTTCTTCGATGTGTGCGTCTCGGAACCTGAGCCCAT
GGAGATTGACTGCTTTGAGTTGTGGTTAGAGGGGCCAACCCTCTCGCAAG
CCGCACGACGACGCTCAAACGAAATGATTGATGCCGTCCGCCTCTACCAT
ACCCACCTTCATGACAACTGCAGCCCGTCCACGTCCTCATCCATGTCCAC
AACTGCAGCGATCGCCGCACTGATGGAGGACCGCGAAGTCATGCAATTTG
TGCGTGCGTCGTTGGCAGACAGCTTCCGCGTCCTTGATTTACTCGAGAGC
TCCTTGTACCACCCTCCCTCGTTTCTTGGCCACCCCTTTATCCAGCTGCC
CATGCCTGGCCGGCTGCTGATGATCGAAATGTATTATGCCTTAGACCCGT
ACGTCGCCCGGGAGATTATCTGGCGGAAGCAATCCGCAAAACGTATCGGC
AAGGACTTGGAAGAGATCAAGGAGGCGACGGGAGTGTCTTTGCGCAGCTG
TCGACGGCAACACGACAATTGGAAGCGGGTGTATACCATTCTGGAGGAGC
AGCGAGGATTTCAATGTCACGTGGCTCATGCGGTAGAGCAGTCCTTTTTG
CTTTCCCCCGCACTGGCGTGCCAGTACACGGTTTGCATATTCCTCGCCTA
TCATAAATTTGTGTTGGCTGCTCCCACCTACCATTACCAGCTTCGTCAAC
CGTCCTCGACACGGTTACCTTACTCATCCTTTAAGTCGTCTTCCATTGAC
TATCTCTCTTCCTCCTCCTCCCAGCCTCTGTATCTCCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGCAACAGAACCAACAGCAGCTTTCGCATCCTTTTCTCCAGCATCCAAAT
CGGACACACGCCCTTCCCTTTAGTAAAATACTATTCATGAGCTTGGCCGT
CCTCGTATTTTGGGTGCCCGAGTTGCCCTGCGCCATCACCACGATCAGCG
GGAACAGCAGCAGTGAGAAAGGTGCACAGCACCAGGAGCAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGGAGGAGGA
GGAGGAGGAGGAAGATGATGAGGAGGAAAGCATCAGCAATACCAGCACCA
GCGGCTGGGTGTTTGCGTCCTTGTCCCATCGGCTGGAGGCCGTGAATATT
GGTGGTGGTATTGGTGGGCATCGTGGAAGGCAGGACAGCCTTTTAATGAG
TCATCTCCCAACGGCGGCAACGACGGAGGAAAAGACAGTGGCAGACGTGG
TGCGGAGCATGCTGGAGATTGCCGACTTAATCGTGGAGGAGGAGGGAGAA
GGGAAAGAGGGAGGAATAGAAGAAGCAGGTGGTGGAGTTGCCAGCAGCGG
GCAGCCGCAGAAGAGCTCCAGCAGTAATACGACTAGCATCGAACAAGGGC
AGCAGCAGCAGCAGCAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCGAGATTCCTCATGCTCAGCCCGCCCAGAGGAAGGGGCTCGGCT
ACTATTGCAATCCCGTCTACGGAAAACCTTTGGGTTGGAGTTAGAGAAGG
TCTTGTTGGTGAGCTTGCGGGATCTATCTCGTTTTTTCAACGACACAACT
GTGATGGAGCAGTACCAGGCTGAGGTGGCCACCTACTTGCTTAATCAGGG
TGAAAACAGAGGAGGTGGAGGCGGAGGACCAACAGCAGCAAGAAGAACAG
AAAATAGGAGGTTGTTGGGGAATAGATGGATGGTCCAAGCTGTGGAACGT
CGGTTCAAGGCTATCTTACGGCCCTTGTCTGCAGTGGGGTGGGGACTGTC
TCTTCAGAAGGAGTTAAAAGACTTCTTTGAGGACGTTTTGGTGAAAGTGA
CTCTACCTTTGCGAGACCTAAGGCTATCGCGTCGTGATCTGTGTCATTTA
TTTACGGCGCTAATCAATAGCTTCCACTCGATCCCGGTGTTGAGGGAGGG
GAAGAGTAAGAGCATTTCGCAAAAGTAAGAGGGGGTTGAAAGGGTAGCCG
AGAGAGGGGAGATTAGGGGGGCAGATTTATAGTGGGAAAGAAGGAGTTTA
TTAGTTGACGAATAATTTTTAAGACTCACGTCACCTCTCATTCCAACCAC
ACATCCGCAGGCGACTAAATCAGTATGCCGTTTCCTGGGCGCGATTCCTA
AGCGGAATGCTCCTGTGCATCCTCCACACTTACCCCATCTGGTGCCTACC
CTCACCTTCGCCCATAATATCGACCGTGCTAAAAGCCCAGGGGGATAGGA
GTAAAAGATGAAATCAACATTTGCGAAAGAAAAAGCACACATGTACAGTC
A
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Coding sequence (CDS) from alignment at chr25:162436..164786+

>NO25G00570.1 ID=NO25G00570.1|Name=NO25G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=2175bp|location=Sequence derived from alignment at chr25:162436..164786+ (Nannochloropsis oceanica)
ATGGATGAGGAAGGCTTCTTCGATGTGTGCGTCTCGGAACCTGAGCCCAT
GGAGATTGACTGCTTTGAGTTGTGGTTAGAGGGGCCAACCCTCTCGCAAG
CCGCACGACGACGCTCAAACGAAATGATTGATGCCGTCCGCCTCTACCAT
ACCCACCTTCATGACAACTGCAGCCCGTCCACGTCCTCATCCATGTCCAC
AACTGCAGCGATCGCCGCACTGATGGAGGACCGCGAAGTCATGCAATTTG
TGCGTGCGTCGTTGGCAGACAGCTTCCGCGTCCTTGATTTACTCGAGAGC
TCCTTGTACCACCCTCCCTCGTTTCTTGGCCACCCCTTTATCCAGCTGCC
CATGCCTGGCCGGCTGCTGATGATCGAAATGTATTATGCCTTAGACCCGT
ACGTCGCCCGGGAGATTATCTGGCGGAAGCAATCCGCAAAACGTATCGGC
AAGGACTTGGAAGAGATCAAGGAGGCGACGGGAGTGTCTTTGCGCAGCTG
TCGACGGCAACACGACAATTGGAAGCGGGTGTATACCATTCTGGAGGAGC
AGCGAGGATTTCAATGTCACGTGGCTCATGCGGTAGAGCAGTCCTTTTTG
CTTTCCCCCGCACTGGCGTGCCAGTACACGGTTTGCATATTCCTCGCCTA
TCATAAATTTGTGTTGGCTGCTCCCACCTACCATTACCAGCTTCGTCAAC
CGTCCTCGACACGGTTACCTTACTCATCCTTTAAGTCGTCTTCCATTGAC
TATCTCTCTTCCTCCTCCTCCCAGCCTCTGTATCTCCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGCAACAGAACCAACAGCAGCTTTCGCATCCTTTTCTCCAGCATCCAAAT
CGGACACACGCCCTTCCCTTTAGTAAAATACTATTCATGAGCTTGGCCGT
CCTCGTATTTTGGGTGCCCGAGTTGCCCTGCGCCATCACCACGATCAGCG
GGAACAGCAGCAGTGAGAAAGGTGCACAGCACCAGGAGCAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGGAGGAGGA
GGAGGAGGAGGAAGATGATGAGGAGGAAAGCATCAGCAATACCAGCACCA
GCGGCTGGGTGTTTGCGTCCTTGTCCCATCGGCTGGAGGCCGTGAATATT
GGTGGTGGTATTGGTGGGCATCGTGGAAGGCAGGACAGCCTTTTAATGAG
TCATCTCCCAACGGCGGCAACGACGGAGGAAAAGACAGTGGCAGACGTGG
TGCGGAGCATGCTGGAGATTGCCGACTTAATCGTGGAGGAGGAGGGAGAA
GGGAAAGAGGGAGGAATAGAAGAAGCAGGTGGTGGAGTTGCCAGCAGCGG
GCAGCCGCAGAAGAGCTCCAGCAGTAATACGACTAGCATCGAACAAGGGC
AGCAGCAGCAGCAGCAAGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCGAGATTCCTCATGCTCAGCCCGCCCAGAGGAAGGGGCTCGGCT
ACTATTGCAATCCCGTCTACGGAAAACCTTTGGGTTGGAGTTAGAGAAGG
TCTTGTTGGTGAGCTTGCGGGATCTATCTCGTTTTTTCAACGACACAACT
GTGATGGAGCAGTACCAGGCTGAGGTGGCCACCTACTTGCTTAATCAGGG
TGAAAACAGAGGAGGTGGAGGCGGAGGACCAACAGCAGCAAGAAGAACAG
AAAATAGGAGGTTGTTGGGGAATAGATGGATGGTCCAAGCTGTGGAACGT
CGGTTCAAGGCTATCTTACGGCCCTTGTCTGCAGTGGGGTGGGGACTGTC
TCTTCAGAAGGAGTTAAAAGACTTCTTTGAGGACGTTTTGGTGAAAGTGA
CTCTACCTTTGCGAGACCTAAGGCTATCGCGTCGTGATCTGTGTCATTTA
TTTACGGCGCTAATCAATAGCTTCCACTCGATCCCGGTGTTGAGGGAGGG
GAAGAGTAAGAGCATTTCGCAAAAGCGACTAAATCAGTATGCCGTTTCCT
GGGCGCGATTCCTAAGCGGAATGCTCCTGTGCATCCTCCACACTTACCCC
ATCTGGTGCCTACCCTCACCTTCGCCCATAATATCGACCGTGCTAAAAGC
CCAGGGGGATAGGAGTAAAAGATGA
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Synonyms
Publications