NO25G00510.1, NO25G00510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00510.1
Unique NameNO25G00510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length855
Alignment locationchr25:147738..148592 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:147738..148592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00510.1 vs.
Match: EWM21631.1 (6-phosphogluconolactonase [Nannochloropsis gaditana])

HSP 1 Score: 297.0 bits (759), Expect = 6.400e-77
Identity = 162/284 (57.04%), Postives = 199/284 (70.07%), Query Frame = 0 
Query:    2 SAKLVVAADTETLKAVIAEHVAVSAKAAIADRGCYTLALSGGSMPGLLGGLTSVSGVDWTQVYVLFSDERCVSLDDADSNYKACSDALLSKLSIPASNVLTIDPSLGSADAMAQAYETKLKALLPSPGGIPQLDTVILGFGPDGHTASLFPDHPLLGETGKFVAGIEDSPKPPPERITLTFPILHAAREVLFIAAGVAKAQLFQQAFSAPALIAGEKQQPSAILDAGVRSHSIVSLRSNSPYPAFQVRPSTENLWYYTDTAGASLLPAN-LKTVVTIKAATGFL 285
            + +LVV A  + LKA IA H+A +A++AIA RG Y LALSGGSMP  L GL +V GVDW +V++LF+DERCV LD  DSNY AC+ A L+KL IP  N+LTID S G+A+A+AQ YE +L ALL   G +  +DTV+LG GPDGHTASLFP H LL ET K VAGI DSPKPPPERITLT+P L AA+EV+FIA GVAKA LF++A           ++ +   +A   S    ++R N P+PAFQVRP++  LWYYTD  GAS LPA+ L    T K  TGFL
Sbjct:    6 AVRLVVGATPDALKACIATHIATAARSAIAHRGRYILALSGGSMPHTLTGLITVPGVDWARVFILFTDERCVPLDHEDSNYNACNSAFLNKLPIPVGNILTIDNSQGTAEAIAQDYEKRLMALLAVHGAL-SIDTVLLGIGPDGHTASLFPGHALLCETKKMVAGITDSPKPPPERITLTYPALRAAQEVVFIAVGVAKASLFKEALCFSTSSMDGPREKAEYAEAADCSLMTATIRENLPFPAFQVRPASGELWYYTDREGASFLPAHGLSQNQTEKMGTGFL 288
The following BLAST results are available for this feature:
BLAST of NO25G00510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21631.16.400e-7757.046-phosphogluconolactonase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00510NO25G00510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00510.1NO25G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00510.1.cds1NO25G00510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00510.1 ID=NO25G00510.1|Name=NO25G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp
ATGTCTGCCAAGCTGGTCGTGGCAGCCGACACGGAAACCCTCAAGGCCGT
CATTGCAGAGCATGTGGCGGTGTCGGCCAAGGCAGCGATTGCTGACCGGG
GCTGCTATACACTCGCGCTTTCGGGGGGCTCGATGCCAGGCTTGTTGGGC
GGGCTGACGAGCGTCTCCGGCGTGGATTGGACACAGGTATACGTCCTCTT
CTCCGACGAGCGATGCGTCTCACTAGATGACGCGGACAGCAACTACAAAG
CCTGTAGTGATGCCCTGCTCAGCAAGCTATCGATTCCCGCGAGCAACGTC
TTGACGATCGATCCCTCCCTCGGCAGCGCCGACGCCATGGCGCAGGCCTA
CGAGACAAAGCTCAAGGCTTTGTTGCCCTCCCCTGGCGGCATTCCACAGC
TCGACACGGTAATTCTGGGTTTTGGTCCTGATGGGCATACCGCATCCCTT
TTCCCGGACCACCCCTTGCTCGGCGAAACTGGCAAATTTGTGGCGGGCAT
CGAGGACTCGCCCAAGCCACCGCCTGAACGCATCACGCTGACGTTTCCAA
TCCTACATGCCGCCCGGGAGGTGTTGTTTATTGCTGCCGGGGTCGCTAAG
GCCCAGCTTTTCCAACAGGCCTTTTCGGCCCCGGCCCTAATCGCGGGGGA
AAAGCAACAACCCTCGGCCATTTTGGATGCAGGAGTGAGGAGCCACAGCA
TCGTCTCCTTGCGCAGCAACTCACCCTATCCCGCATTTCAAGTCCGACCG
TCCACAGAAAATCTGTGGTATTACACAGACACAGCCGGAGCATCGTTGCT
GCCAGCTAATCTAAAGACTGTGGTGACTATAAAAGCCGCAACGGGTTTTT
TGTGA
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protein sequence of NO25G00510.1

>NO25G00510.1-protein ID=NO25G00510.1-protein|Name=NO25G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MSAKLVVAADTETLKAVIAEHVAVSAKAAIADRGCYTLALSGGSMPGLLG
GLTSVSGVDWTQVYVLFSDERCVSLDDADSNYKACSDALLSKLSIPASNV
LTIDPSLGSADAMAQAYETKLKALLPSPGGIPQLDTVILGFGPDGHTASL
FPDHPLLGETGKFVAGIEDSPKPPPERITLTFPILHAAREVLFIAAGVAK
AQLFQQAFSAPALIAGEKQQPSAILDAGVRSHSIVSLRSNSPYPAFQVRP
STENLWYYTDTAGASLLPANLKTVVTIKAATGFL*
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mRNA from alignment at chr25:147738..148592+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00510.1 ID=NO25G00510.1|Name=NO25G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp|location=Sequence derived from alignment at chr25:147738..148592+ (Nannochloropsis oceanica)
ATGTCTGCCAAGCTGGTCGTGGCAGCCGACACGGAAACCCTCAAGGCCGT
CATTGCAGAGCATGTGGCGGTGTCGGCCAAGGCAGCGATTGCTGACCGGG
GCTGCTATACACTCGCGCTTTCGGGGGGCTCGATGCCAGGCTTGTTGGGC
GGGCTGACGAGCGTCTCCGGCGTGGATTGGACACAGGTATACGTCCTCTT
CTCCGACGAGCGATGCGTCTCACTAGATGACGCGGACAGCAACTACAAAG
CCTGTAGTGATGCCCTGCTCAGCAAGCTATCGATTCCCGCGAGCAACGTC
TTGACGATCGATCCCTCCCTCGGCAGCGCCGACGCCATGGCGCAGGCCTA
CGAGACAAAGCTCAAGGCTTTGTTGCCCTCCCCTGGCGGCATTCCACAGC
TCGACACGGTAATTCTGGGTTTTGGTCCTGATGGGCATACCGCATCCCTT
TTCCCGGACCACCCCTTGCTCGGCGAAACTGGCAAATTTGTGGCGGGCAT
CGAGGACTCGCCCAAGCCACCGCCTGAACGCATCACGCTGACGTTTCCAA
TCCTACATGCCGCCCGGGAGGTGTTGTTTATTGCTGCCGGGGTCGCTAAG
GCCCAGCTTTTCCAACAGGCCTTTTCGGCCCCGGCCCTAATCGCGGGGGA
AAAGCAACAACCCTCGGCCATTTTGGATGCAGGAGTGAGGAGCCACAGCA
TCGTCTCCTTGCGCAGCAACTCACCCTATCCCGCATTTCAAGTCCGACCG
TCCACAGAAAATCTGTGGTATTACACAGACACAGCCGGAGCATCGTTGCT
GCCAGCTAATCTAAAGACTGTGGTGACTATAAAAGCCGCAACGGGTTTTT
TGTGA
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Coding sequence (CDS) from alignment at chr25:147738..148592+

>NO25G00510.1 ID=NO25G00510.1|Name=NO25G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr25:147738..148592+ (Nannochloropsis oceanica)
ATGTCTGCCAAGCTGGTCGTGGCAGCCGACACGGAAACCCTCAAGGCCGT
CATTGCAGAGCATGTGGCGGTGTCGGCCAAGGCAGCGATTGCTGACCGGG
GCTGCTATACACTCGCGCTTTCGGGGGGCTCGATGCCAGGCTTGTTGGGC
GGGCTGACGAGCGTCTCCGGCGTGGATTGGACACAGGTATACGTCCTCTT
CTCCGACGAGCGATGCGTCTCACTAGATGACGCGGACAGCAACTACAAAG
CCTGTAGTGATGCCCTGCTCAGCAAGCTATCGATTCCCGCGAGCAACGTC
TTGACGATCGATCCCTCCCTCGGCAGCGCCGACGCCATGGCGCAGGCCTA
CGAGACAAAGCTCAAGGCTTTGTTGCCCTCCCCTGGCGGCATTCCACAGC
TCGACACGGTAATTCTGGGTTTTGGTCCTGATGGGCATACCGCATCCCTT
TTCCCGGACCACCCCTTGCTCGGCGAAACTGGCAAATTTGTGGCGGGCAT
CGAGGACTCGCCCAAGCCACCGCCTGAACGCATCACGCTGACGTTTCCAA
TCCTACATGCCGCCCGGGAGGTGTTGTTTATTGCTGCCGGGGTCGCTAAG
GCCCAGCTTTTCCAACAGGCCTTTTCGGCCCCGGCCCTAATCGCGGGGGA
AAAGCAACAACCCTCGGCCATTTTGGATGCAGGAGTGAGGAGCCACAGCA
TCGTCTCCTTGCGCAGCAACTCACCCTATCCCGCATTTCAAGTCCGACCG
TCCACAGAAAATCTGTGGTATTACACAGACACAGCCGGAGCATCGTTGCT
GCCAGCTAATCTAAAGACTGTGGTGACTATAAAAGCCGCAACGGGTTTTT
TGTGA
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Synonyms
Publications