NO25G00310.1, NO25G00310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00310.1
Unique NameNO25G00310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1524
Alignment locationchr25:93399..95210 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:93399..95210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00310.1 vs.
Match: CBN75190.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 156.4 bits (394), Expect = 1.200e-34
Identity = 95/230 (41.30%), Postives = 128/230 (55.65%), Query Frame = 0 
Query:   15 VQKVALVIAHVCAVVSVILVSRWA--NGTGEGFLGGLDWGDKNLVFNYHPVLMVTAFVFSFTEALLVYRTFPFSKRVNKSIHLGLQTLAVILASVGLRAVFKNHQETNKADLWSLHSWLGLAVFILFLINYTVGVGAFFFQLAPLPLRASILPYHVLVGITLYLAAIFTAQTGIVEKLALSG---KCTAHYPPTEGGVHYSLLNDGCRLANWMGLVLFLTALAGALAVLP 240
            +Q  +L  AHV +  ++I+V  WA  N   + FLGGL +    L FN+HPVLMV   V ++T+ +L YRT    + VNK IH      AVIL S+GL AVF+ H +   A+L+++HSW G+ V  LF  NY  G   FF    P  ++A  LP HV +GI  Y AA FT   GI +K +  G     T   P      HYS L  GCRL+N +G+V+ +T L    AV+P
Sbjct:    4 IQVRSLWAAHVMSWTALIMVLVWALANQDDDYFLGGLAFSGTGL-FNWHPVLMVAGLVVAYTQGILAYRTLSLEREVNKMIHNACMFTAVILVSLGLIAVFQYHNKELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTYFAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYSNLYAGCRLSNGLGIVVIVTCLCATYAVMP 232
The following BLAST results are available for this feature:
BLAST of NO25G00310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN75190.11.200e-3441.30conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00310NO25G00310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00310.1NO25G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00310.1.cds1NO25G00310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00310.1.cds2NO25G00310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00310.1.cds3NO25G00310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00310.1 ID=NO25G00310.1|Name=NO25G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp
CTTGTTCCTGTTGACTGACAGCTTTACGTTGCCGTGCTTTGAGTGAGTGG
TGTCTCGCGTAACATTATCCAAATCCACAGCTCTAAGGAACAGGTCTCTA
TCAAGTGCTTGTGCTGCCTGATCTTAGTTTTTGCGGAGGAAAAGCGGCAC
AGTCAAAACGCTGGCTGACGTAAGCGTGCTTGGACCATGGACATGGGACC
AGGGGTGTGTTGATAAGAAGCAATCAACTCAAGATTTCCGACTATTTCCC
CATCCAACGACCCCACATAGACGCATTAATTAGGGTGCCATAGGTCTCCA
GCCCCTCGAGGTCGTCAGTCCCTCCTCCTTGCACCAGTCACCACCTCCGC
TTCCCGCCCTCCGCCTTCCCGGCCCTCCTATTCCAACCCAACGAGAAGGA
GAAGGAGTCGCAGGACCCGCCGCAGCAACCACCTCCAATACCGGGACGGC
TACAGGCACGGCCATGGTAAACTACGGGGGAAAAGGCCCGAAGCCCACCA
CGCACGTCCAAAAGGTGGCCCTGGTGATCGCACATGTCTGCGCTGTGGTC
TCAGTCATCCTCGTATCGCGATGGGCTAATGGGACGGGGGAAGGCTTCTT
GGGGGGATTAGATTGGGGGGACAAGAATTTGGTCTTTAACTATCACCCCG
TGCTGATGGTGACCGCCTTCGTTTTCTCCTTTACGGAGGCTCTGCTGGTG
TATCGGACGTTTCCCTTCTCCAAACGGGTCAATAAATCCATCCACCTCGG
GTTGCAGACCCTGGCTGTGATCCTCGCCAGCGTTGGCTTGCGGGCGGTCT
TCAAGAACCACCAGGAAACGAATAAGGCTGACCTCTGGTCTCTTCACTCT
TGGCTAGGGCTCGCCGTCTTCATTCTTTTTCTTATCAATTACACCGTCGG
AGTGGGCGCCTTCTTCTTTCAGCTGGCCCCCCTGCCTCTGCGTGCCTCCA
TCCTGCCCTACCACGTGCTGGTGGGCATCACGCTCTACCTGGCTGCCATC
TTCACGGCTCAGACAGGCATCGTCGAGAAACTGGCTCTGTCGGGCAAGTG
CACCGCCCACTATCCTCCGACCGAGGGAGGGGTGCATTACTCCTTGCTTA
ATGACGGCTGTCGCCTCGCCAACTGGATGGGGCTTGTCCTCTTCCTGACT
GCCCTCGCCGGGGCCCTGGCCGTGCTCCCTGCGCAGCATACGCGAGAGGG
AGGACGGGGAGGCAGGGGGTCGAGCGAGGTCCTACTGGAGACAGGGGTGT
AGACTTTGTGGCATGTGATTGGATACAGGGAGGGAGGCAGCAAGCGGATG
TAAAAACGTATGTTCGGTGAGGGAGGGGGAAGGACGGTGAAGGGAGGGTG
GAGGAGGGTGGGTCGGCTGGAGAAAAGGGATTTGACAAATACAGGATCAC
AGTGGGCTTGGAGGGCTGAAAATGAAGGAGGAAAGGTAGATGAAGTAGAT
GAAGGAGAAAAAGAGGGAAACAGGAAGGTGAGAGCCAGGTGAAGAAAAAG
AGAAGAACCTGTAAGCGTGTGAAG
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protein sequence of NO25G00310.1

>NO25G00310.1-protein ID=NO25G00310.1-protein|Name=NO25G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MVNYGGKGPKPTTHVQKVALVIAHVCAVVSVILVSRWANGTGEGFLGGLD
WGDKNLVFNYHPVLMVTAFVFSFTEALLVYRTFPFSKRVNKSIHLGLQTL
AVILASVGLRAVFKNHQETNKADLWSLHSWLGLAVFILFLINYTVGVGAF
FFQLAPLPLRASILPYHVLVGITLYLAAIFTAQTGIVEKLALSGKCTAHY
PPTEGGVHYSLLNDGCRLANWMGLVLFLTALAGALAVLPAQHTREGGRGG
RGSSEVLLETGV*
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mRNA from alignment at chr25:93399..95210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00310.1 ID=NO25G00310.1|Name=NO25G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp|location=Sequence derived from alignment at chr25:93399..95210- (Nannochloropsis oceanica)
CTTGTTCCTGTTGACTGACAGCTTTACGTTGCCGTGCTTTGAGTGAGTGG
TGTCTCGCGTAACATTATCCAAATCCACAGCTCTAAGGAACAGGTCTCTA
TCAAGTGCTTGTGCTGCCTGATCTTAGTTTTTGCGGAGGAAAAGCGGCAC
AGTCAAAACGCTGGCTGACGTAAGCGTGCTTGGACCATGGACATGGGACC
AGGGGTGTGTTGATAAGAAGCAATCAACTCAAGATTTCCGACTATTTCCC
CATCCAACGACCCCACATAGACGCATTAATTAGGGTGCCATAGGTCTCCA
GCCCCTCGAGGTCGTCAGTCCCTCCTCCTTGCACCAGTCACCACCTCCGC
TTCCCGCCCTCCGCCTTCCCGGCCCTCCTATTCCAACCCAACGAGAAGGA
GAAGGAGTCGCAGGACCCGCCGCAGCAACCACCTCCAATACCGGGACGGC
TACAGGCACGGCCATGGTAAACTACGGGGGAAAAGGCCCGAAGCCCACCA
CGCACGTCCAAAAGGTGGCCCTGGTGATCGCACATGTCTGCGCTGTGGTC
TCAGTCATCCTCGTATCGCGATGGGCTAATGGGACGGGGGAAGGCTTCTT
GGGGGGATTAGATTGGGGGGACAAGAATTTGGTCTTTAACTATCACCCCG
TGCTGATGGTGACCGCCTTCGTTTTCTCCTTTACGGAGGCTCTGCTGGTG
TATCGGACGTTTCCCTTCTCCAAACGGGTCAATAAATCCATCCACCTCGG
GTTGCAGACCCTGGCTGTGATCCTCGCCAGCGTTGGCTTGCGGGTACGTG
GCGGGGATAGGCGGGGCAGAGAGAAAAGGAGGGACGAAAGACGTGCATGG
GAGAGAGAGACTGAGGAAGACAGACTCCTCAACAATTAAATCATTCTCCC
ACCCCCCATCTCTTCCTTCCTTCTCCTCTCCCCCCCTCTTGCAGGCGGTC
TTCAAGAACCACCAGGAAACGAATAAGGCTGACCTCTGGTCTCTTCACTC
TTGGCTAGGGCTCGCCGTCTTCATTCTTTTTCTTATCAATTACACCGTCG
GAGTGGGCGCCTTCTTCTTTCAGCTGGCCCCCCTGCCTCTGCGTGCCTCC
ATCCTGCCCTACCACGTGCTGGTGGGCATCACGCTCTACCTGGCTGCCAT
CTTCACGGCTCAGACAGGTAAGGAGGATTAACGAAGGAAGGAGATATGGC
GGATAAGGCCTCAGGACGACCAAAGCAGTTTAGGTGAGAGGCTGCAAATC
TCACTTACGAAACCCTGCCGGTTTGGTTGTCTCCCTCCTTTCCCCCTTGC
CCAGGCATCGTCGAGAAACTGGCTCTGTCGGGCAAGTGCACCGCCCACTA
TCCTCCGACCGAGGGAGGGGTGCATTACTCCTTGCTTAATGACGGCTGTC
GCCTCGCCAACTGGATGGGGCTTGTCCTCTTCCTGACTGCCCTCGCCGGG
GCCCTGGCCGTGCTCCCTGCGCAGCATACGCGAGAGGGAGGACGGGGAGG
CAGGGGGTCGAGCGAGGTCCTACTGGAGACAGGGGTGTAGACTTTGTGGC
ATGTGATTGGATACAGGGAGGGAGGCAGCAAGCGGATGTAAAAACGTATG
TTCGGTGAGGGAGGGGGAAGGACGGTGAAGGGAGGGTGGAGGAGGGTGGG
TCGGCTGGAGAAAAGGGATTTGACAAATACAGGATCACAGTGGGCTTGGA
GGGCTGAAAATGAAGGAGGAAAGGTAGATGAAGTAGATGAAGGAGAAAAA
GAGGGAAACAGGAAGGTGAGAGCCAGGTGAAGAAAAAGAGAAGAACCTGT
AAGCGTGTGAAG
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Coding sequence (CDS) from alignment at chr25:93399..95210-

>NO25G00310.1 ID=NO25G00310.1|Name=NO25G00310.1|organism=Nannochloropsis oceanica|type=CDS|length=789bp|location=Sequence derived from alignment at chr25:93399..95210- (Nannochloropsis oceanica)
ATGGTAAACTACGGGGGAAAAGGCCCGAAGCCCACCACGCACGTCCAAAA
GGTGGCCCTGGTGATCGCACATGTCTGCGCTGTGGTCTCAGTCATCCTCG
TATCGCGATGGGCTAATGGGACGGGGGAAGGCTTCTTGGGGGGATTAGAT
TGGGGGGACAAGAATTTGGTCTTTAACTATCACCCCGTGCTGATGGTGAC
CGCCTTCGTTTTCTCCTTTACGGAGGCTCTGCTGGTGTATCGGACGTTTC
CCTTCTCCAAACGGGTCAATAAATCCATCCACCTCGGGTTGCAGACCCTG
GCTGTGATCCTCGCCAGCGTTGGCTTGCGGGCGGTCTTCAAGAACCACCA
GGAAACGAATAAGGCTGACCTCTGGTCTCTTCACTCTTGGCTAGGGCTCG
CCGTCTTCATTCTTTTTCTTATCAATTACACCGTCGGAGTGGGCGCCTTC
TTCTTTCAGCTGGCCCCCCTGCCTCTGCGTGCCTCCATCCTGCCCTACCA
CGTGCTGGTGGGCATCACGCTCTACCTGGCTGCCATCTTCACGGCTCAGA
CAGGCATCGTCGAGAAACTGGCTCTGTCGGGCAAGTGCACCGCCCACTAT
CCTCCGACCGAGGGAGGGGTGCATTACTCCTTGCTTAATGACGGCTGTCG
CCTCGCCAACTGGATGGGGCTTGTCCTCTTCCTGACTGCCCTCGCCGGGG
CCCTGGCCGTGCTCCCTGCGCAGCATACGCGAGAGGGAGGACGGGGAGGC
AGGGGGTCGAGCGAGGTCCTACTGGAGACAGGGGTGTAG
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Synonyms
Publications