NO25G00270.1, NO25G00270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00270.1
Unique NameNO25G00270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length327
Alignment locationchr25:81549..82560 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:81549..82560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00270NO25G00270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00270.1NO25G00270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00270.1.cds1NO25G00270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00270.1.cds2NO25G00270.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00270.1 ID=NO25G00270.1|Name=NO25G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=327bp
ATGCAGGCCCCCGAGAACCAGCGAAAGCAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCAGCAGCAGAAGGAGGAGCACGATCATAATGATGGCGTTTTTT
TCTTTCCTTTGGCTCATGTTGTCGGTGGTAAACCACCGGCTAGATCTCTG
CCCCGTACGGGAGGATCACCGCGGCTGGAGCCCAAGGGTATGTCGGACTT
CCCTTGCCATCAAGAGATGGAGGAGATGGAGGCTGTTGAAGCAGAGGAGG
AGGAGGCGGAGGAGGCGGAGGAGATGGAGGAGGAGGAGGCGGAGGCACTG
TGTTCATCACACAGACCTCTAACCTGA
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protein sequence of NO25G00270.1

>NO25G00270.1-protein ID=NO25G00270.1-protein|Name=NO25G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MQAPENQRKQQQQQQQQQQQQQKEEHDHNDGVFFFPLAHVVGGKPPARSL
PRTGGSPRLEPKGMSDFPCHQEMEEMEAVEAEEEEAEEAEEMEEEEAEAL
CSSHRPLT*
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mRNA from alignment at chr25:81549..82560+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00270.1 ID=NO25G00270.1|Name=NO25G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp|location=Sequence derived from alignment at chr25:81549..82560+ (Nannochloropsis oceanica)
ATGCAGGCCCCCGAGAACCAGCGAAAGCAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCAGCAGCAGAAGGAGGAGCACGATCATAATGATGGCGTTTTTT
TCTTTCCTTTGGCTCATGTTGTCGGTGGTAAACCACCGGCTAGGTGAAAT
GAAACGACACCTGGCCAATTCCACCAATATTTTAGTTCGCTCACGTCAAT
GTGCACCATCGGTGACAAAGCTGACATCAGCGTCAGAGTAATAACCTGTT
TCATCGCTCCTCTTGAGGATGACTTTCCCAGCATCCTGCCCGCGCGTGTG
GACAACGTCAAGACTTTTGGTATGCCTGTTCGGCCAGTACAACAGAACTT
TCCATTTATAGACCAGAGTGCCAGTGGGTACACACTCGCTGCCGCAATCG
CTCGGTACTCGGTCTCAGGTGATATTTTCGCCGCTACATTTCGCGGTGAC
AATCCTTTTGCAGTTAGATGTATTGCCGTATAGGAGGCAGCATGGACGGG
CAAGACCCTGTTTATCACTCGCAATGTGTACAGCACCGACGATGGTGCCG
TGTTTTCCATGATGGTTCAGCTGCGAGGGGGTAATCGTATACACGGACAT
GAGAATCGAAGGCAAACTCGCGCCCATCGTCGTCTTGCTCAACCGCGGAG
GGGCTGACGCTGCATTCGAGGCAGTCCAAGCGCTGCGTATACTGCTCCAC
AAGTATCATCTGAATAGAGGGGGGCGGTCATGGCCCTCTCTATTACGAAG
GGCTTCCACTCATTTATGAGTGTCGCTGCCATAACTGATGAGGGAGGCTT
CTTTCGGGATGTGATCCTGCGTGGTCAGATCTCTGCCCCGTACGGGAGGA
TCACCGCGGCTGGAGCCCAAGGGTATGTCGGACTTCCCTTGCCATCAAGA
GATGGAGGAGATGGAGGCTGTTGAAGCAGAGGAGGAGGAGGCGGAGGAGG
CGGAGGAGATGGAGGAGGAGGAGGCGGAGGCACTGTGTTCATCACACAGA
CCTCTAACCTGA
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Coding sequence (CDS) from alignment at chr25:81549..82560+

>NO25G00270.1 ID=NO25G00270.1|Name=NO25G00270.1|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at chr25:81549..82560+ (Nannochloropsis oceanica)
ATGCAGGCCCCCGAGAACCAGCGAAAGCAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCAGCAGCAGAAGGAGGAGCACGATCATAATGATGGCGTTTTTT
TCTTTCCTTTGGCTCATGTTGTCGGTGGTAAACCACCGGCTAGATCTCTG
CCCCGTACGGGAGGATCACCGCGGCTGGAGCCCAAGGGTATGTCGGACTT
CCCTTGCCATCAAGAGATGGAGGAGATGGAGGCTGTTGAAGCAGAGGAGG
AGGAGGCGGAGGAGGCGGAGGAGATGGAGGAGGAGGAGGCGGAGGCACTG
TGTTCATCACACAGACCTCTAACCTGA
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Synonyms
Publications