NO25G00210.2, NO25G00210.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00210.2
Unique NameNO25G00210.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1892
Alignment locationchr25:47677..51217 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:47677..51217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00210.2 vs.
Match: XP_009528949.1 (hypothetical protein PHYSODRAFT_315654 [Phytophthora sojae]; EGZ15200.1 hypothetical protein PHYSODRAFT_315654 [Phytophthora sojae])

HSP 1 Score: 242.7 bits (618), Expect = 2.000e-60
Identity = 128/257 (49.81%), Postives = 182/257 (70.82%), Query Frame = 0 
Query:   23 LPSTLISSLPLLAQVRDMMEAFVIYSFLALVLEYAGGDATCLNRIKNEPPLRHLFPLC-CLSPMPRDGRFLRVCKQGTLQFVFIKPFMAAVSLIVTSKGLFWSRGYQASLLLIYNVSYSVALYCLALFYLGLKDILKSFSPIAKFLAVKAVVFATYWQSLLLLLWAGEANAS--RWNNFILCLEMVPFSVFLGLAFSHKEYRQS---LPDNIDVLHNMKEVLSVRDVVADAYHNFMPTYQEYTLHRPQGAGGRSSER 274
            L  T ++       +RD  EAFV+YSFLALVL +AGG++ C+ ++++EP +RH +PL  C  P+ RDGR LR+CK+ T+QFVFIKP  AA+SL++ + G + +  YQ  L+++YN+SYSVALY L LFYL  + IL+ F+P+ KF AVK+VVF T+WQ+ LL    G  N     W +FILC+EMVPF+    LAF+  +++++   LPD+ +VL+NMKEVLS+ D++ADAYHNFMP+Y++Y L R    GG S+ R
Sbjct:   90 LSLTFVNQALYFDSIRDCYEAFVVYSFLALVLSFAGGESVCVLKMQSEPDIRHPWPLSRCFEPVGRDGRLLRLCKRATIQFVFIKPIFAALSLLMLACGKYHTLAYQLILVVVYNISYSVALYGLWLFYLATRHILQPFNPVLKFFAVKSVVFLTFWQNSLLDFIPGITNEQTFAWKDFILCVEMVPFAFVHLLAFNSSQFKKNLDRLPDS-EVLNNMKEVLSLSDILADAYHNFMPSYRDYMLQR----GGESTGR 341
The following BLAST results are available for this feature:
BLAST of NO25G00210.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009528949.12.000e-6049.81hypothetical protein PHYSODRAFT_315654 [Phytophtho... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00210NO25G00210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00210.2NO25G00210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00210.2.cds1NO25G00210.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00210.2.cds2NO25G00210.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00210.2.cds3NO25G00210.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00210.2.cds4NO25G00210.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00210.2.cds5NO25G00210.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00210.2.cds6NO25G00210.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00210.2.cds7NO25G00210.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00210.2.cds8NO25G00210.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00210.2.cds9NO25G00210.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00210.2 ID=NO25G00210.2|Name=NO25G00210.2|organism=Nannochloropsis oceanica|type=mRNA|length=1892bp
ACAGACACAAACCCAGATACAACGACGCATCCCTCCACGTCCAGGGATTA
TAGAGGAATCAAGCGCTGAGTCAAGCGCGCGGGCGCGGTCATGCTTTCTG
CTGCCGCTGCCAATGACGCTCCTCTCCTCCTGGGCCGGGGAGATCTCCAC
CATACTGCTTCCACCGCCTCCTCTTCCTCTTTCCGACCTGACGGCTCGGT
AGCCATGGCCCTAGCTAGTGTAGCGACGGCGATCTCGTTGTCCATATCTC
TGTTTTGCATCTACAAGCACTTGACTAATTACAGCGTGCCAAGAATACAG
CGCTATATTATTCGCATCCTTTTCGTCTCCCCTGTCTACGCGCTGGGGTC
TCTGTTTTCCTTGCGGTTCCCGGAGGCGAGCGTGGGCCTGGAGACGGTGA
GGGAGGGAGGGAAGGAAGGAGGGAGGTAGGGAGAGAGGGAGAGAGGAAGG
GAAGAAGGGAAGGAGAGAAGGTGAGGAGGCGGCGACATCGACGTGTTTGG
CATTGATTAGGATACGTGGTCGACTATCAAGGTGGTATGGCGTTACCAAC
AAGAAGCGGAAAGATCGATCTCTCCTCTCAGGCATGTCTCCCCCCTCCTT
CCCTCCCTTCCACCCTCATCTCCTCCCTCCCTCTCCTTGCCCAGGTACGC
GACATGATGGAGGCCTTTGTCATTTACTCGTTCCTGGCCCTGGTGTTGGA
GTATGCGGGGGGTGATGCCACGTGCTTGAACAGAATCAAGAATGAGCCCC
CCCTGCGGCACCTCTTCCCTCTCTGTTGCCTCAGCCCCATGCCGCGCGAC
GGTCGCTTCTTGCGCGTGTGCAAACAAGGCACGCTCCAGTTCGTCTTCAT
TAAGCCCTTCATGGCCGCCGTCTCCCTCATCGTTACTAGCAAGGGGCTCT
TCTGGTCCCGGGGGTACCAGGCCTCCCTCCTACTCATCTACAACGTTTCC
TATTCCGTCGCCCTCTATTGCCTCGCGCTCTTCTACCTCGGTCTCAAAGA
TATCCTAAAATCCTTCTCTCCCATCGCCAAATTTCTCGCTGTCAAGGCCG
TCGTCTTCGCCACCTACTGGCAATCCCTCCTCCTCCTCCTATGGGCCGGG
GAGGCCAACGCTAGCCGTTGGAACAACTTCATTCTCTGCCTTGAGATGGT
GCCCTTCTCGGTCTTCTTGGGCCTGGCCTTCTCCCACAAGGAGTACCGCC
AGTCCCTCCCCGATAATATCGACGTGCTCCACAACATGAAGGAAGTGCTC
AGTGTCAGGGACGTGGTCGCTGACGCCTACCACAACTTTATGCCAACCTA
TCAGGAATACACTCTACACAGACCCCAAGGCGCCGGTGGCCGCAGCAGCG
AACGCAAGTACCGTGCGCACACTTTCCTGGCAGGTAATATTGATGCCCTC
CGTCTCCGGGACCACGACGGGGGGCTGGAGGGAGGGAGGGAGGGAGAAGA
GGAGGGCGGGATGGAGGGCGAGGAGGGCGAGGAGGAAGAGGAGGAAGAGG
AGGTTGAGGTGGAAATAGAAGGGTTGAGTGGGGGGAAGGGAGGGAGGGTA
GAAATGAAGAAGAGAGGATACTCGGCTGCTCCTTCTTCTTCTCCTTCTCC
TGTACGGAAGGTCACTTTTGTGGGGGGGCACGGAGGGAGAGAAGGAGGGC
AAGGGGGAGGAGTGAAGGGAGGAGGGGCGGCGTTGCCGGCGTCGCCGCTG
GAAGGTGGAAGAAGGAAGGAGGGAAAAGTAAACTTCTAGGAAGTCTAGGA
GGGAGGGTGTGTATACAGAGAGTAACATAGACGTGATAGAGTAAATCCGA
GTTTTGGAGGCGACGACAGACAGACCCGACCTCAAGAACGAGAAGAACGA
GGAAGGAAGAAAAAAAATGGATGGATAGAAGCAGCCATCCAG
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protein sequence of NO25G00210.2

>NO25G00210.2-protein ID=NO25G00210.2-protein|Name=NO25G00210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MALPTRSGKIDLSSQACLPPPSLPSTLISSLPLLAQVRDMMEAFVIYSFL
ALVLEYAGGDATCLNRIKNEPPLRHLFPLCCLSPMPRDGRFLRVCKQGTL
QFVFIKPFMAAVSLIVTSKGLFWSRGYQASLLLIYNVSYSVALYCLALFY
LGLKDILKSFSPIAKFLAVKAVVFATYWQSLLLLLWAGEANASRWNNFIL
CLEMVPFSVFLGLAFSHKEYRQSLPDNIDVLHNMKEVLSVRDVVADAYHN
FMPTYQEYTLHRPQGAGGRSSERKYRAHTFLAGNIDALRLRDHDGGLEGG
REGEEEGGMEGEEGEEEEEEEEVEVEIEGLSGGKGGRVEMKKRGYSAAPS
SSPSPVRKVTFVGGHGGREGGQGGGVKGGGAALPASPLEGGRRKEGKVNF
*
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mRNA from alignment at chr25:47677..51217+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00210.2 ID=NO25G00210.2|Name=NO25G00210.2|organism=Nannochloropsis oceanica|type=mRNA|length=3541bp|location=Sequence derived from alignment at chr25:47677..51217+ (Nannochloropsis oceanica)
ACAGACACAAACCCAGATACAACGACGCATCCCTCCACGTCCAGGGATTA
TAGAGGAATCAAGCGCTGAGTCAAGCGCGCGGGCGCGGTCATGCTTTCTG
CTGCCGCTGCCAATGACGCTCCTCTCCTCCTGGGCCGGGGAGATCTCCAC
CATACTGCTTCCACCGCCTCCTCTTCCTCTTTCCGACCTGACGGCTCGGT
AGCCATGGCCCTAGCTAGTGTAGCGACGGCGATCTCGTTGTCCATATCTC
TGTTTTGCATCTACAAGCACTTGACTAATTACAGCGTGCCAAGGTATTCG
GGACGCACGGGACGGAGGGAGGGAACGAGGGATGGAGCAAGAATATGCAT
GGGTTGGCGCGGACACGATTCCCTCATCCTCTTGCCCCCTCCCCCCTTTC
CAACCCTCAGAATACAGCGCTATATTATTCGCATCCTTTTCGTCTCCCCT
GTCTACGCGCTGGGGTCTCTGTTTTCCTTGCGGTTCCCGGAGGCGAGCGT
GGGCCTGGAGACGGTGAGGGAGGGAGGGAAGGAAGGAGGGAGGTAGGGAG
AGAGGGAGAGAGGAAGGGAAGAAGGGAAGGAGAGAAGGTGAGGAGGCGGC
GACATCGACGTGTTTGGCATTGATTAGGATACGTGGTCGACTATCAAGGT
GGTATGGCGTTACCAACAAGAAGCGGAAAGATCGATCTCTCCTCTCAGGC
ATGTCTCCCCCCTCCTTCCCTCCCTTCCACCCTCATCTCCTCCCTCCCTC
TCCTTGCCCAGGTACGCGACATGATGGAGGCCTTTGTCATTTACTCGTTC
CTGGCCCTGGTGTTGGAGTATGCGGGGGGTGATGCCACGTGCTTGAACAG
GTGGGTGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTAGAGAAGGAGG
GGAGGGAGAACTTTGCCTCTGGATAGCATTCTAAGACGGGTATCCTGTGT
CTCATGCTCGTCTTCTGTCCCCTTCTTCCCTCCCTCCCTCCTTCTCTCCC
TCCTTTTCTCGCCCGTAGAATCAAGAATGAGCCCCCCCTGCGGCACCTCT
TCCCTCTCTGTTGCCTCAGCCCCATGCCGCGCGACGGTCGCTTCTTGCGC
GTGTGCAAACAAGGTGAGGGAGGGGGGGAGGGAGGGAGGGAGAAAGGGAG
GGAGGGGGGAGGGCGTGATGAGTGCGTGGGTAGGCGAGAACGACGGAATG
ACGACAAGACTCCTCCTCCCCCTCTCCCTCCCTCCCTCCCTTCCCGCAAG
GCACACTCCAATTTGCCTCCATGAAGCCCTCCATTCACCCCCTTCCCGTC
CTCCCTCCCCCCTCCCGCCTTCCCTTTCCAGGCACGCTCCAGTTCGTCTT
CATTAAGCCCTTCATGGCCGCCGTCTCCCTCATCGTTACTAGCAAGGGGC
TCTTCTGGTCCCGGGGGTACCAGGTGAGGGGGGAGGGAGGGAGGGAGGGG
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCCTCGTGGTCATCTACA
TCATCGTCTTCTCCCTCCCTCCCCGCAGCCAAGACACCCATCTCTCCCCC
TCCCTCCTTCCCTCCCCCTCCGCCTCCTTCCAGGCCTCCCTCCTACTCAT
CTACAACGTTTCCTATTCCGTCGCCCTCTATTGCCTCGCGCTCTTCTACC
TCGGTCTCAAAGATATCCTAAAATCCTTCTCTCCCATCGCCAAATTTCTC
GCTGTCAAGGCCGGTGAGAAAGCAAGCCCGCCCTTTCTCTTTCCCTCCCT
TCCTCAGTCCCTCCCTCCCTCTTTCCTCACTCGTCTCACCCCCACCTCTC
TCCCTCCCTCCCTCCTTCCCGCCTTAGTCGTCTTCGCCACCTACTGGCAA
TCCCTCCTCCTCCTCCTATGGGCCGGGGAGGCCAACGCTAGCCGTTGGAA
CAACTTCATTCTCTGCCTTGAGATGGTGCCCTTCTCGGTCTTCTTGGGTG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGAGCGAGGA
CTACACCCACACACACACCTCTCGTCTTTCTTGCCTCCAGGCCTGGCCTT
GTGCCTATATATGTATGTATATGTAACAATAATATAAAAGTCTTATACAC
CGTAACTTACACTGACCCTGTGTCCAGGCCTGGCCTTCTCCCACAAGGAG
TACCGCCAGTCCCTCCCCGATAATATCGACGTGCTCCACAACATGAAGGA
AGTGCTCAGTGTCAGGTAGGTAGGTAGGTAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGCATGCAGTCTTATGAAATGTCGC
TCCTTTGTTTGCATCGTGCGAATCCCACTCCCCCCACTCCCCCCACTCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCACCCTCCCTCCCTCCCACCCTCCC
TTACCGTCTAACTCAGGGACGTGGTCGCTGACGCCTACCACAACTTTATG
CCAACCTATCAGGTGAGCACCCTCCCTCCCTCCCTCCCTCCCTTTCTCCC
TCCCTTCCGCCATCCCTTCAGCAGTCTCTCGCTCTCGAGGGCCTCTTTTC
CTTCTTTCCCTCGCTACACTCCTAGTCTCTCTGCTTCCCTCTCTTCCTTT
CGCTCTTCCTCCCTCTCTTTCTTACTATGTTTTTTCTCCCTCCTACCAGC
ACCACCACTCTCGCTCTTTGCCTTTCTCTCTTGATGTTTCTCGCCCACTC
GAAAGGAGCACACTCTACACAGACACTCCTTCCCACTGACACTCTCCCTT
TCCTTTCTCCCCCTCTCTCTCTCACTCTTGATGTTTCTCGTTCCCTCGAA
AGGAATACACTCTACACAGACCCCAAGGCGCCGGTGGCCGCAGCAGCGGT
ACGTCTTCCTCCTTCCTTTCCTCCTCCCCTCCTTCCTCCCTACCTCCCTA
TACTATCCCCACCCTACCCCTCTACCCTCCCCTATTACGAGAACGCAGAA
CTCACACCTTCTTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGA
ACGCAAGTACCGTGCGCACACTTTCCTGGCAGGTAATATTGATGCCCTCC
GTCTCCGGGACCACGACGGGGGGCTGGAGGGAGGGAGGGAGGGAGAAGAG
GAGGGCGGGATGGAGGGCGAGGAGGGCGAGGAGGAAGAGGAGGAAGAGGA
GGTTGAGGTGGAAATAGAAGGGTTGAGTGGGGGGAAGGGAGGGAGGGTAG
AAATGAAGAAGAGAGGATACTCGGCTGCTCCTTCTTCTTCTCCTTCTCCT
GTACGGAAGGTCACTTTTGTGGGGGGGCACGGAGGGAGAGAAGGAGGGCA
AGGGGGAGGAGTGAAGGGAGGAGGGGCGGCGTTGCCGGCGTCGCCGCTGG
AAGGTGGAAGAAGGAAGGAGGGAAAAGTAAACTTCTAGGAAGTCTAGGAG
GGAGGGTGTGTATACAGAGAGTAACATAGACGTGATAGAGTAAATCCGAG
TTTTGGAGGCGACGACAGACAGACCCGACCTCAAGAACGAGAAGAACGAG
GAAGGAAGAAAAAAAATGGATGGATAGAAGCAGCCATCCAG
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Coding sequence (CDS) from alignment at chr25:47677..51217+

>NO25G00210.2 ID=NO25G00210.2|Name=NO25G00210.2|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr25:47677..51217+ (Nannochloropsis oceanica)
ATGGCGTTACCAACAAGAAGCGGAAAGATCGATCTCTCCTCTCAGGCATG
TCTCCCCCCTCCTTCCCTCCCTTCCACCCTCATCTCCTCCCTCCCTCTCC
TTGCCCAGGTACGCGACATGATGGAGGCCTTTGTCATTTACTCGTTCCTG
GCCCTGGTGTTGGAGTATGCGGGGGGTGATGCCACGTGCTTGAACAGAAT
CAAGAATGAGCCCCCCCTGCGGCACCTCTTCCCTCTCTGTTGCCTCAGCC
CCATGCCGCGCGACGGTCGCTTCTTGCGCGTGTGCAAACAAGGCACGCTC
CAGTTCGTCTTCATTAAGCCCTTCATGGCCGCCGTCTCCCTCATCGTTAC
TAGCAAGGGGCTCTTCTGGTCCCGGGGGTACCAGGCCTCCCTCCTACTCA
TCTACAACGTTTCCTATTCCGTCGCCCTCTATTGCCTCGCGCTCTTCTAC
CTCGGTCTCAAAGATATCCTAAAATCCTTCTCTCCCATCGCCAAATTTCT
CGCTGTCAAGGCCGTCGTCTTCGCCACCTACTGGCAATCCCTCCTCCTCC
TCCTATGGGCCGGGGAGGCCAACGCTAGCCGTTGGAACAACTTCATTCTC
TGCCTTGAGATGGTGCCCTTCTCGGTCTTCTTGGGCCTGGCCTTCTCCCA
CAAGGAGTACCGCCAGTCCCTCCCCGATAATATCGACGTGCTCCACAACA
TGAAGGAAGTGCTCAGTGTCAGGGACGTGGTCGCTGACGCCTACCACAAC
TTTATGCCAACCTATCAGGAATACACTCTACACAGACCCCAAGGCGCCGG
TGGCCGCAGCAGCGAACGCAAGTACCGTGCGCACACTTTCCTGGCAGGTA
ATATTGATGCCCTCCGTCTCCGGGACCACGACGGGGGGCTGGAGGGAGGG
AGGGAGGGAGAAGAGGAGGGCGGGATGGAGGGCGAGGAGGGCGAGGAGGA
AGAGGAGGAAGAGGAGGTTGAGGTGGAAATAGAAGGGTTGAGTGGGGGGA
AGGGAGGGAGGGTAGAAATGAAGAAGAGAGGATACTCGGCTGCTCCTTCT
TCTTCTCCTTCTCCTGTACGGAAGGTCACTTTTGTGGGGGGGCACGGAGG
GAGAGAAGGAGGGCAAGGGGGAGGAGTGAAGGGAGGAGGGGCGGCGTTGC
CGGCGTCGCCGCTGGAAGGTGGAAGAAGGAAGGAGGGAAAAGTAAACTTC
TAG
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Synonyms
Publications