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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr25 | genome | chr25:33953..38436 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO25G00170.2 vs.
Match: CBJ29699.1 (Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase, family GT58 [Ectocarpus siliculosus]) HSP 1 Score: 320.1 bits (819), Expect = 8.600e-84 Identity = 181/348 (52.01%), Postives = 242/348 (69.54%), Query Frame = 0
Query: 1 MRGDTGPLVYPGGFVWIFSFLYKITDKGSNVRLAQWIFMGIYLLTLLLVLQLYQR--TRLAPLWILPCLILSKRLHSIFMLRMFNDGLAMCLLYAAVLFFSTNKWARGCLLYSLAVSVKMNILLFAPGLALLLLQALGPWGAVLHIFLCGLVQLLVAYPFLYHHPIAYLSKAFELTRAFQFEWTVNFRFLPEEVFLSKPLAIVLLLALSLALCLFARKWVLAPTAPLISHSFNSPSL------------PPSLPLSPAYVVYTLFVSNFLGVAFARTLHYQFYAWYFHTLPALAFASLPPSLPPSLPRLLLLLGIEVAFNVFPSTFVSSLLLQACHLSLLFLLYYSPV 335
+RGDTGPLVYP GFV+ +S LY +TD+G ++ AQ+IFMG+Y+ +++VL +Y+R + PLW + + S+R+HSIF+LR+FNDG+AM LLY AV F N+W GC+ YSLAV VKMNILLFAPGL LLL+QA G GA + + +C VQLL+ PFL HHP+AYLS++FEL R F+FEWTVNF+FL EE F+S L+I LL L LFA KW+ + +F++ L + L P YVV TLFVSNF+G+ F R+LHYQFY+WY+HTLP L + + LP +L RL++L G+EV FNVFP+T +SS +LQ CH+++L L+ SPV
Sbjct: 77 LRGDTGPLVYPAGFVYAYSLLYWVTDRGEDIFTAQYIFMGVYVSLMVMVLSIYRRAGSGAMPLWSILLVCTSRRVHSIFVLRLFNDGVAMWLLYGAVYLFLLNRWRLGCVSYSLAVGVKMNILLFAPGLLLLLVQANGVGGAAVCLSICAGVQLLLGAPFLLHHPVAYLSRSFELGRVFKFEWTVNFKFLTEEAFVSPGLSIALLALTLAVLALFASKWLRSARE---VETFSASDLRAGEGAGGATGGAVNARLHPEYVVKTLFVSNFIGIVFCRSLHYQFYSWYYHTLPFLLWQT---GLPVAL-RLVVLCGVEVGFNVFPATALSSGVLQVCHVAILAGLWVSPV 417
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO25G00170.2 ID=NO25G00170.2|Name=NO25G00170.2|organism=Nannochloropsis oceanica|type=mRNA|length=2715bp CCTCCTCCTCCTCCTCCTCCAGTCCTCTTCCTTGGTCGGCCCCGACCCCG TTTTACCGGAGCCTCCATTTTCTCTTCTTTCTCTCCACTCTCCCCCTCTT TCTCTCCTTTTTCCATCGAGGAGGAAGGGGGAATGACAACCCCTCCTCCT CCTCCTCCAGCAGTCCCCTTCCTAGGTCGGCCTCTCCCACGTTTCACGGG AGCCTCCACTGTCGTTTTTTTTTCCCTCCCCTCTCTCCTTCCCTCTCCTG ACTCCATGGAGGAAGAAGGGGAGATAACAATCTCCATCTCCTCCTCCTCC TCCTTTTCCTCCTCCTGTTCCTCCTCTTCCTCCTCCTCCACTCCTACCTC CTTCCCTCCCTCCTCCTCCTGCTCAACATTCGGCTTTTGCTTTGTAGGTG GACAGACAGTGCAGGAGCTGCCGTCACGACTTGCCCCTTCCCCTCCTTTT GCATCTCTTACTTCCTCCTCCTTCTTGGTCCTCTTCCGGCTGCTCGCCTT CTTCTCGTCCTCTTGCATCCTCTTCCTGCTTGGGCTGCTGCTCCTGCTGC TGCTACCATCCTCCTCCTCCTTTTCTTCCTCCGTCTCCTCCTCCGAGGCC TCTCCCTCATCTGACCTCGCCACCTCCACCACCTCCAACCCTCCTTCCTC TCCTCCCACCTCAGGCGACGACGGAGGGGTACGTTCCTCTCCTTGCTCTT CAGCTGTTGCTGCTGCTTCCATTGTTTGGTCTTCCATATGCGCGGGTACA CCGTCGCCTTGTCCTGCGTGTGGCATCATTTTGACTTATGTGTGGGCTTG CTTGGCTTTGGATGGCCGTGGACGGTGCGTATTGAACAAATTACAGGCTG GGCCTGCAGTAGAAAGAAAAGGGCAGTGGGGCAGGGTTGGTGTTGCATCA TGGATGCCCGAAATCAAGCAGGGCAATTAAGCACACCTCGCAGCCTCTTC CCGGCCTTGACTGAATGAGCAAGTAGACAGAATGCAAGAATGTCTCTGTC TGTGTCTGTGTGAAAGGTGGGAAAGGGAAGCACAGGCAAAGGCATCTGCA TCTGGTCGGTCGATGTCGTGCCTTTACCAGACCAACAGACATATTTATCG CCATAAAACCGACCGCATGTCAATCGCTCAGAGAAAAAAACAGCCGAGTA ATCGCCTCACGGAAAGAATACACTCACAACAGCAGCCACGAGAAGGAGGA GGGGGCATGGCGCCGCGTCTCCGGTCGGCCGACTCGAAAGTGGAGGCTAA GGAAAAAGGTGGTGGAGGGGCTTTGGTCTGCTCCCTCGCCAAGCTCTACC AAAAGCACGAGGAGCAAGGATGGCGCATACTCCCATGGCTTCTCTTTCTG GCGGACGCTGCTCTGTCCGTTGTAATAGTCTTGAAAGCCGGCTACACGGA GATCGACTGGGTAGCCTACATGCAGGAGGTGAGGGAGGGAGAAGGAAGGG ACGGACGGAGAGAGGGAGGGAGGGAAGGAGAGAGGGTGGAACGGAGGGAG AGAAATGCTTCCAATATGAATTTGCGTCTTTTGGTTCTCACTTTAATCTA TTTTCTGTCAATTCATATACATGTTTGTATATGTATGCAAACACATACAT AATTGTGTTTGCACATGAATACCAATTAGGTGGCCAGCTTCTTGGAGGAT GGCGAAACCAACTACCTCAACATGAGAGGTGACACAGGCCCACTGGTCTA TCCCGGGGGTTTCGTTTGGATCTTCTCCTTCCTCTACAAAATCACCGACA AGGGCAGCAATGTCCGATTAGCCCAGTGGATCTTCATGGGCATCTACCTT CTCACTCTCCTCCTCGTCCTCCAGCTCTATCAACGCACTCGTCTTGCTCC CCTCTGGATCCTGCCCTGCTTGATCTTGTCCAAGCGTCTTCACTCCATCT TCATGCTCCGAATGTTCAACGACGGCCTCGCCATGTGCCTGCTCTATGCC GCCGTCCTCTTCTTCTCCACCAACAAGTGGGCCCGCGGCTGTCTCCTCTA CTCCCTGGCCGTCTCCGTTAAAATGAACATTCTTCTCTTCGCACCCGGCC TCGCCCTCCTCCTCCTTCAAGCGCTCGGCCCCTGGGGCGCTGTCCTCCAC ATTTTCCTCTGCGGTCTCGTCCAGCTTCTGGTTGCATATCCCTTCCTATA TCATCACCCTATCGCCTACCTGAGCAAGGCCTTTGAGCTGACTCGGGCCT TTCAATTCGAGTGGACGGTCAATTTTCGTTTTTTGCCCGAGGAGGTCTTC CTCTCCAAACCCCTTGCTATCGTCCTCCTCCTCGCCCTCAGCCTCGCCCT CTGCCTTTTCGCCCGCAAGTGGGTTTTGGCGCCAACTGCTCCCCTCATCT CCCACAGCTTCAACAGCCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCCC GCTTACGTCGTCTACACCCTCTTTGTCTCCAACTTCCTCGGCGTGGCTTT CGCCCGCACCCTCCACTATCAGTTTTACGCCTGGTACTTCCACACACTTC CAGCCCTGGCCTTCGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCC CGGCTCCTCCTCCTGCTGGGGATAGAGGTGGCTTTCAACGTCTTTCCTTC CACTTTCGTCTCTTCCCTCCTCCTCCAGGCATGCCATCTCTCCCTCCTCT TTCTCCTCTACTACTCTCCTGTCCCCTCTGCTCTTCCGACAAAGCCGCCA ACGAAAAGAAAGTAG back to topprotein sequence of NO25G00170.2 >NO25G00170.2-protein ID=NO25G00170.2-protein|Name=NO25G00170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp MRGDTGPLVYPGGFVWIFSFLYKITDKGSNVRLAQWIFMGIYLLTLLLVL QLYQRTRLAPLWILPCLILSKRLHSIFMLRMFNDGLAMCLLYAAVLFFST NKWARGCLLYSLAVSVKMNILLFAPGLALLLLQALGPWGAVLHIFLCGLV QLLVAYPFLYHHPIAYLSKAFELTRAFQFEWTVNFRFLPEEVFLSKPLAI VLLLALSLALCLFARKWVLAPTAPLISHSFNSPSLPPSLPLSPAYVVYTL FVSNFLGVAFARTLHYQFYAWYFHTLPALAFASLPPSLPPSLPRLLLLLG IEVAFNVFPSTFVSSLLLQACHLSLLFLLYYSPVPSALPTKPPTKRK* back to topmRNA from alignment at chr25:33953..38436- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO25G00170.2 ID=NO25G00170.2|Name=NO25G00170.2|organism=Nannochloropsis oceanica|type=mRNA|length=4484bp|location=Sequence derived from alignment at chr25:33953..38436- (Nannochloropsis oceanica) CCTCCTCCTCCTCCTCCTCCAGTCCTCTTCCTTGGTCGGCCCCGACCCCG
TTTTACCGGAGCCTCCATTTTCTCTTCTTTCTCTCCACTCTCCCCCTCTT
TCTCTCCTTTTTCCATCGAGGAGGAAGGGGGAATGACAACCCCTCCTCCT
CCTCCTCCAGCAGTCCCCTTCCTAGGTCGGCCTCTCCCACGTTTCACGGG
AGCCTCCACTGTCGTTTTTTTTTCCCTCCCCTCTCTCCTTCCCTCTCCTG
ACTCCATGGAGGAAGAAGGGGAGATAACAATCTCCATCTCCTCCTCCTCC
TCCTTTTCCTCCTCCTGTTCCTCCTCTTCCTCCTCCTCCACTCCTACCTC
CTTCCCTCCCTCCTCCTCCTGCTCAACATTCGGCTTTTGCTTTGTAGGTG
GACAGACAGTGCAGGAGCTGCCGTCACGACTTGCCCCTTCCCCTCCTTTT
GCATCTCTTACTTCCTCCTCCTTCTTGGTCCTCTTCCGGCTGCTCGCCTT
CTTCTCGTCCTCTTGCATCCTCTTCCTGCTTGGGCTGCTGCTCCTGCTGC
TGCTACCATCCTCCTCCTCCTTTTCTTCCTCCGTCTCCTCCTCCGAGGCC
TCTCCCTCATCTGACCTCGCCACCTCCACCACCTCCAACCCTCCTTCCTC
TCCTCCCACCTCAGGCGACGACGGAGGGGTACGTTCCTCTCCTTGCTCTT
CAGCTGTTGCTGCTGCTTCCATTGTTTGGTCTTCCATATGCGCGGGTACA
CCGTCGCCTTGTCCTGCGTGTGGCATCATTTTGACTTATGTGTGGGCTTG
CTTGGCTTTGGATGGCCGTGGACGGTGCGTATTGAACAAATTACAGGCTG
GGCCTGCAGTAGAAAGAAAAGGGCAGTGGGGCAGGGTTGGTGTTGCATCA
TGGATGCCCGAAATCAAGCAGGGCAATTAAGCACACCTCGCAGCCTCTTC
CCGGCCTTGACTGAATGAGCAAGTAGACAGAATGCAAGAATGTCTCTGTC
TGTGTCTGTGTGAAAGGTGGGAAAGGGAAGCACAGGCAAAGGCATCTGCA
TCTGGTCGGTCGATGTCGTGCCTTTACCAGACCAACAGACATATTTATCG
CCATAAAACCGACCGCATGTCAATCGCTCAGAGAAAAAAACAGCCGAGTA
ATCGCCTCACGGAAAGAATACACTCACAACAGCAGCCACGAGAAGGAGGA
GGGGGCATGGCGCCGCGTCTCCGGTCGGCCGACTCGAAAGTGGAGGCTAA
GGAAAAAGGTGGTGGAGGGGCTTTGGTCTGGTGAGTGAGGAGAGGGGTTT
GGGGTACAAGGAGATGAGCAGATAAGCAGGCAAGCAGGACGGTATGGATG
CCGTGTCCGCCCCTCCCTTCGTCCTCTCTTCATGCCCTCCGCCTGAAAGC
GTGGGTTGCTGGCTTTTCTTCTCCTCCTCCATTGCATCTCCCTGCAGTGC
TAACACTGCTGCCTTTGCTGAAGCCTTGTGCCCCTACATTCCCTCCCACC
CTCCCTCCATTTAGCTCCCTCGCCAAGCTCTACCAAAAGCACGAGGAGCA
AGGATGGCGCATACTCCCATGGCTTCTCTTTCTGGCGGACGCTGCTCTGT
CCGTTGTAATAGTCTTGAAAGCCGGCTGTACGTAAAGGACGGAAGGAAAG
GGGGGTGGGGGGAGGGAAGAAAGAACAGTAGCATAGAAAAAAAGGAGACT
CTCTAGATCCATTTTTTCCGTATTTATTTACGCATTAAGTCATTCATGTC
ATTTCATTTTAAATTCCCTTAAAACACAGACACGGAGATCGACTGGGTAG
CCTACATGCAGGAGGTGAGGGAGGGAGAAGGAAGGGACGGACGGAGAGAG
GGAGGGAGGGAAGGAGAGAGGGTGGAACGGAGGGAGAGAAATGCTTCCAA
TATGAATTTGCGTCTTTTGGTTCTCACTTTAATCTATTTTCTGTCAATTC
ATATACATGTTTGTATATGTATGCAAACACATACATAATTGTGTTTGCAC
ATGAATACCAATTAGGTGGCCAGCTTCTTGGAGGATGGCGAAACCAACTA
CCTCAACATGAGAGGTACCTCCCCCCTTCCTTCCCTCCCTCCCTCCCTCC
TTCCCTCCTTCCGTCATGCCCTCATGTCGTCCCTCCCTCCCTCCCTCCCT
CCCTTCCTCGCAGGTGACACAGGCCCACTGGTCTATCCCGGGGGTTTCGT
TTGGATCTTCTCCTTCCTCTACAAAATCACCGACAAGGGCAGCAATGTCC
GATTAGGTACAGCCTCCCTCCCCCCCTCCCCTCCCTGATGACCTCTAGAG
CCGTAGGCTTGGCTTGGCTTGTCTTATGCCCATGTTTTTTTTAACGCAAA
CCCCCGTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCTTCCCTCCAGCCCAGTGGATCTTCATGGGCATCTACCTTCTCAC
TCTCCTCCTCGTCCTCCAGCTCTATCAACGCACTCGTCTTGCTCCCCTCT
GGATCCTGCCCTGCTTGATCTTGTCCAAGGTATCTCCCTCCCTCCCTCCC
GCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCCCTCTCAGT
CCCCTTCCCGCCCTCCCTCTCGCCCTCCCTCAAGCCAACTTCTTTCCCAC
CCCTCGCTCGCCGAATCGTCCCTCGGACATCGACTCATCCCCCCCTTCTC
CCTCCCTCCCTCCCTCCCTTCCTCCCCCAGCGTCTTCACTCCATCTTCAT
GCTCCGAATGTTCAACGACGGCCTCGCCATGTGCCTGCTCTATGCCGCCG
TCCTCTTCTTCTCCACCAACAAGGTAGTTAGCCACCCCTCCCTCCCTCCC
TTCTTTCCTCCCTCCCTCTCCCTTCCTCCTCATCACCCCCTTCATCATTC
CCCCTTCCTCCCTCCCTCTCCCTCCCTCCTCATCACCCCCTCCCTCCCTC
CCTTCTGTCCTCCCTCGCTCCCTTCCTCCTCATCACTCCCCTCATCATTC
CCCCTTCCTCCCTCCCTCTCCCTCCCTCCTCATTTCTCCCTTCCCCCCTA
TCCCAGTGGGCCCGCGGCTGTCTCCTCTACTCCCTGGCCGTCTCCGTTAA
AATGAACATTCTTCTCTTCGCACCCGGCCTCGCCCTCCTCCTCCTTCAAG
CGCTCGGTACGTCTCCTCCCTCCCTCCCTCCCTCTCTCCCTCGTCTTTCT
TCATGCCGAATGATCCTTCCCTCCCTCCTTTCCTCCCTCCCTCCCTCCCT
CCCTCCTTCTTTCTCCAGGCCCCTGGGGCGCTGTCCTCCACATTTTCCTC
TGCGGTCTCGTCCAGCTTCTGGTTGCATATCCCTTCCTATATCATCACCC
TATCGCCTACCTGAGCAAGGTACTCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCGCCTTCCCAGCCTTCGCGTTCGTCCTCCTCTTTGTGCCTACG
ACTTTTGCCCGCACACACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCAAGGCCTTTGAGCTGACTCGGGCCTTTCAATTCGAGTGGAC
GGTCAATTTTCGTTTTTTGCCCGAGGAGGTAAGGAGGGAGGGAGGGAGGG
AGGGAGGAAGGGAGAGAGGGAGAATCACATGATGAATGGCCAGTCACGTG
AACACCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTCCTCCC
TTCCTTCCTCCCTCCCTCCGGCAGGTCTTCCTCTCCAAACCCCTTGCTAT
CGTCCTCCTCCTCGCCCTCAGCCTCGCCCTCTGCCTTTTCGCCCGCAAGT
GGGTTTTGGCGCCAACTGCTCCCCTGTAAGAAGGGAAGGAGGAAGGGAGG
AAGGGAAGGAGGGAGGGAGGGAGGGGCTGTGTACAGTGATGGATCCAGAC
ACACTGAGATCAATGTTTCTCACTCTCTCTTGCTCTTCCTCCTTCTTTAC
TCCCAAGCAGCATCTCCCACAGCTTCAACAGCCCCTCCCTCCCTCCCTCC
CTCCCTCTCTCCCCCGCTTACGTCGTCTACACCCTCTTTGTCTCCAACTT
CCTCGGCGTGGCTTTCGCCCGCACCCTCCACTATCAGGTATACATCCATA
CCCTACACCCCCTCCTTCTCCTCCCTCCCTCCCTCCCTCCCTTCTTCTTT
CGCATTGTCGATCACTAGACCCCCCCCACATTCCCTTCCTTCCTTCCTTC
CTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCAGTTTTACGCC
TGGTACTTCCACACACTTCCAGCCCTGGCCTTCGCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCCCGGCTCCTCCTCCTGCTGGGGATAGAGGTGG
CTTTCAACGTCTTTCCTTCCACTTTCGTCTCTTCCCTCCTCCTCCAGGCA
TGCCATCTCTCCCTCCTCTTTCTCCTCTACTACTCTCCTGTCCCCTCTGC
TCTTCCGACAAAGCCGCCAACGAAAAGAAAGTAG back to topCoding sequence (CDS) from alignment at chr25:33953..38436- >NO25G00170.2 ID=NO25G00170.2|Name=NO25G00170.2|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at chr25:33953..38436- (Nannochloropsis oceanica) ATGAGAGGTGACACAGGCCCACTGGTCTATCCCGGGGGTTTCGTTTGGAT CTTCTCCTTCCTCTACAAAATCACCGACAAGGGCAGCAATGTCCGATTAG CCCAGTGGATCTTCATGGGCATCTACCTTCTCACTCTCCTCCTCGTCCTC CAGCTCTATCAACGCACTCGTCTTGCTCCCCTCTGGATCCTGCCCTGCTT GATCTTGTCCAAGCGTCTTCACTCCATCTTCATGCTCCGAATGTTCAACG ACGGCCTCGCCATGTGCCTGCTCTATGCCGCCGTCCTCTTCTTCTCCACC AACAAGTGGGCCCGCGGCTGTCTCCTCTACTCCCTGGCCGTCTCCGTTAA AATGAACATTCTTCTCTTCGCACCCGGCCTCGCCCTCCTCCTCCTTCAAG CGCTCGGCCCCTGGGGCGCTGTCCTCCACATTTTCCTCTGCGGTCTCGTC CAGCTTCTGGTTGCATATCCCTTCCTATATCATCACCCTATCGCCTACCT GAGCAAGGCCTTTGAGCTGACTCGGGCCTTTCAATTCGAGTGGACGGTCA ATTTTCGTTTTTTGCCCGAGGAGGTCTTCCTCTCCAAACCCCTTGCTATC GTCCTCCTCCTCGCCCTCAGCCTCGCCCTCTGCCTTTTCGCCCGCAAGTG GGTTTTGGCGCCAACTGCTCCCCTCATCTCCCACAGCTTCAACAGCCCCT CCCTCCCTCCCTCCCTCCCTCTCTCCCCCGCTTACGTCGTCTACACCCTC TTTGTCTCCAACTTCCTCGGCGTGGCTTTCGCCCGCACCCTCCACTATCA GTTTTACGCCTGGTACTTCCACACACTTCCAGCCCTGGCCTTCGCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTCCCCCGGCTCCTCCTCCTGCTGGGG ATAGAGGTGGCTTTCAACGTCTTTCCTTCCACTTTCGTCTCTTCCCTCCT CCTCCAGGCATGCCATCTCTCCCTCCTCTTTCTCCTCTACTACTCTCCTG TCCCCTCTGCTCTTCCGACAAAGCCGCCAACGAAAAGAAAGTAG back to top
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