NO25G00150.1, NO25G00150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00150.1
Unique NameNO25G00150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length820
Alignment locationchr25:27540..29353 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:27540..29353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00150NO25G00150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00150.1NO25G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00150.1.cds1NO25G00150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00150.1.cds2NO25G00150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00150.1.cds3NO25G00150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00150.1.cds4NO25G00150.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00150.1.cds5NO25G00150.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00150.1.cds6NO25G00150.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00150.1.cds7NO25G00150.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00150.1 ID=NO25G00150.1|Name=NO25G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=820bp
CACCTAGATCTGACAGGTCTCCTTGACCAGTACAAACAAGTGGAAGAGCA
GTATCATGAGGTGTCGGCGGAGAGTATTACCGTAGCCTGAACGTGAAAAG
GAAGGGAAGCCGGACAGCCGTATATATCAGTCACGTAGGGAGATGGAGGG
CGTGCGGAGTCGGCGCCGCGGCAGAGAGTTGGCAAAAGAGGAAAAGGAAA
AAGAAAGAGAAAGTACTAACACCGTGGGTCTGAAACAAGAGGAGAGTGCG
GCAAAGAAGAAAATAGGGGAAGGCGACGTCCAGGAGGAGGAGGTTGAAGA
AGAGGAGGAGGAGGAAGTGGAGGAAGAGGATGAGGAAGAGGATGAAGAGA
AAGAGGAAGAGGAAAGACAGGATAATGCTCTATGCCTTCTGAATATTCTG
ATCAGACACGGCGAGCGGCTGGGCTGGTGGTGCGCTTTTCTGGGGCTGGG
ATGGATCGCCCTCTTTCCCTTGGCGACCATCACAACTTTCGAGCCCAAGC
CACGTGGCGTGTACTTTGAAGAAAATGCTTTGTTGGCTCCCTTGATGAGC
AGCACCGTCGACCACCGCATGTTTTATCGCGCCAGCCAGCTTCAGCGAGA
GCGAGAAACATCCTCTTTCTCCTCCGATAGAGACTGGCTCCTCGCCTTCC
TCCCCTCCCTCCATCCCTCCCTCCATTCCTTCCTCCACCACGATAACGCC
TCTGTGTGGGCGCTCTACCAGCCGACGCGAGCCCGGAGCGACTTGAAGGA
TGCCCTCCTCCTCGTCTCCTACCTCGAGCCCTCCCCCTCCCCCCCCCCTT
CCTCCTCCTCGCCTTCCTAG
back to top

protein sequence of NO25G00150.1

>NO25G00150.1-protein ID=NO25G00150.1-protein|Name=NO25G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MEGVRSRRRGRELAKEEKEKERESTNTVGLKQEESAAKKKIGEGDVQEEE
VEEEEEEEVEEEDEEEDEEKEEEERQDNALCLLNILIRHGERLGWWCAFL
GLGWIALFPLATITTFEPKPRGVYFEENALLAPLMSSTVDHRMFYRASQL
QRERETSSFSSDRDWLLAFLPSLHPSLHSFLHHDNASVWALYQPTRARSD
LKDALLLVSYLEPSPSPPPSSSSPS*
back to top

mRNA from alignment at chr25:27540..29353+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00150.1 ID=NO25G00150.1|Name=NO25G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at chr25:27540..29353+ (Nannochloropsis oceanica)
CACCTAGATCTGACAGGTCTCCTTGACCAGTACAAACAAGTGGAAGAGCA
GTATCATGAGGTGTCGGCGGAGAGTATTACCGTAGCCTGAACGTGAAAAG
GAAGGGAAGCCGGACAGCCGTATATATCAGTCACGTAGGGAGATGGAGGG
CGTGCGGAGTCGGCGCCGCGGCAGAGAGTTGGCAAAAGAGGAAAAGGAAA
AAGAAAGGTAGGTAGATAAGTGACCGGGAGGGATGGGGTTTTAGGGGGTT
GAGAAAGGAGAGGTTGATGGTAGTGGGTGTAGGGTGGGGGGGGGCAGGGT
GGGCCAATGCTCAGGAAGAAGGAGAGACTGCTGAGGTAATCGGGTTCTCA
ATTCATCATGCATGCACACGCATAAACAGAGAAAGTACTAACACCGTGGG
TCTGAAACAAGAGGAGAGTGCGGCAAAGAAGAAAATAGGGGAAGGCGACG
TCCAGGAGGAGGAGGTTGAAGAAGAGGAGGAGGAGGAAGTGGAGGAAGAG
GATGAGGAAGAGGATGAAGAGAAAGAGGAAGAGGAAAGACAGGATAATGC
TCTATGCCTTCTGAATATTCTGGTACGTCTGTCAACCTCCTCTTTCCTCC
CACCCCCCTCCATTCCTTTCCCGTTCTTAGAGGAAAATCTGCACCATTTC
TCTCCACCGTATCCTCACCCTCCCTCCCTTCCTCCCTTCCTCCCTTCCTC
CCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCTCTCCCTCCT
TTCCTTCCTCAGATCAGACACGGCGAGCGGCTGGGCTGGTGGTGCGCTTT
TCTGGGGCTGGGATGGATCGCCCTCTTTCCCTTGGCGACCATCACAACTT
GTAAAGAGGGAGGGAGAGAGGGAGGGAGGGAAGGAGGGAGGGAGAAGGCG
GTCGACACCACGATCCTCTCGTTGACGTTCATAGACTTATCCTCCCTTCC
TGCCTCCCCCCCTCTCTCCGTCTGTCATCCTTCACCCTTCAGTCGAGCCC
AAGCCACGTGGCGTGTACTTTGAAGAAAATGCTTTGTTGGCTCCCTTGAT
GAGCAGCACCGTCGACCACCGCATGGTGAGGGCGGAGGGTGGGAAGGAGG
GAAGACCGAGCGCCTCATCCATCTCCTTCCTTCTCTTATTCCCTCTCTCC
CACGCATCCACCTGTAGTTTTATCGCGCCAGCCAGCTTCAGCGAGAGCGA
GAAACATCCTCTTTCTCCTCCGATAGAGGTGAGATACTGATCTACGCCCT
CCTTCCTTCCTTCCCTCCTTCCCTCCGTTTCTCCCCGCCTCTCTTCCTCT
CTTAAATCCCTTGTCTGCTTCTCTCGAACTGAAGACTCCCTCATCTCCTT
TCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCACCCTGTTTCTTCAG
ACTGGCTCCTCGCCTTCCTCCCCTCCCTCCATCCCTCCCTCCATTCCTTC
CTCCACCACGATAACGCCTCTGTGTGGGCGCTCTACCAGCCGACGCGAGC
CCGGAGCGACTTGAAGGTGAGGGAGGGAGGGGGGGAGGGAGGGAGGGAGG
GAAGGCAGGCAGGCAGGAATTAGTGGTTCTCCTCTGACTCCTCCATCTAG
AAAGGAAGGAGGGAAGGAAGGGAAGGAGAGAGGGAGGTCGGGAAGTCGGT
CGACGGAGTCTTCATGCCCGCTCCCCTCTTCTCCCCCGACAGGATGCCCT
CCTCCTCGTCTCCTACCTCGAGCCCTCCCCCTCCCCCCCCCCTTCCTCCT
CCTCGCCTTCCTAG
back to top

Coding sequence (CDS) from alignment at chr25:27540..29353+

>NO25G00150.1 ID=NO25G00150.1|Name=NO25G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at chr25:27540..29353+ (Nannochloropsis oceanica)
ATGGAGGGCGTGCGGAGTCGGCGCCGCGGCAGAGAGTTGGCAAAAGAGGA
AAAGGAAAAAGAAAGAGAAAGTACTAACACCGTGGGTCTGAAACAAGAGG
AGAGTGCGGCAAAGAAGAAAATAGGGGAAGGCGACGTCCAGGAGGAGGAG
GTTGAAGAAGAGGAGGAGGAGGAAGTGGAGGAAGAGGATGAGGAAGAGGA
TGAAGAGAAAGAGGAAGAGGAAAGACAGGATAATGCTCTATGCCTTCTGA
ATATTCTGATCAGACACGGCGAGCGGCTGGGCTGGTGGTGCGCTTTTCTG
GGGCTGGGATGGATCGCCCTCTTTCCCTTGGCGACCATCACAACTTTCGA
GCCCAAGCCACGTGGCGTGTACTTTGAAGAAAATGCTTTGTTGGCTCCCT
TGATGAGCAGCACCGTCGACCACCGCATGTTTTATCGCGCCAGCCAGCTT
CAGCGAGAGCGAGAAACATCCTCTTTCTCCTCCGATAGAGACTGGCTCCT
CGCCTTCCTCCCCTCCCTCCATCCCTCCCTCCATTCCTTCCTCCACCACG
ATAACGCCTCTGTGTGGGCGCTCTACCAGCCGACGCGAGCCCGGAGCGAC
TTGAAGGATGCCCTCCTCCTCGTCTCCTACCTCGAGCCCTCCCCCTCCCC
CCCCCCTTCCTCCTCCTCGCCTTCCTAG
back to top
Synonyms
Publications